Lag0040766 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040766
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein downstream neighbor of Son-like isoform X1
Location	chr13: 8069428 .. 8070986 (-)
RNA-Seq Expression	Lag0040766
Synteny	Lag0040766

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAGTCGCTGCTCCAAGTTCGTTACCTTCAGCTTCTCATGATATTGCCGGAGGAGCTCTAAAGACTGGGAAATCAATTAGAAGAAAGACCCCATCAGAACTAAGGGTAAGTTTGTGACTTCCTGAGTAAGTGTTGCTCACTTTGCAGTCTATTACGTATAGAAGAGAAGAATAATGGTAATCCCCTCTTTATTTTGTCTGTAGTTGTTCTCTCTTCTTCAGTTGTTTAAATGGTATAGCATATTGTTGTCGTCGAGAGATAGTGGTAAACCAGATTAATTTTTAGATCACAATAGGGTGTCTTGTTCTGTGATATTATGATCATGATCAAATTTCATGCCAAGTAAAGTCAGAGTTTCAAGGTGATTGAAGAGGTATAGGATGATACATAAGTAAATGTATTTCCGCATTATGAAGTTTCTCCTTTGGTACTTGTTACATTTCCTCATTACTCATTTCACATGGGATGAAACTTTTGTATTTTATGCCCTATGCTCTTCAGCTCACATCAAAGAGTTTTGTTACAAAAATGTAGTTAGGTTGAAGCAACATTTCTGAAACTCGTGTATATCATGCTCAAACTTTTACAGGGAGAACAGTTAAAGAGAACAAATGATTTGGATCTTTTGGACGAATCTCCTTCCACTGTTTTTGCTTCTAACAGGTGAGGCTTACACTTGTCTCTTATTTGTATAGCTTGCAACTATTGATTCACTTAGAGCTTTCTTATTTTTATATGTTCCAACAGTGCTTCGGGCAATGGACTCAAGAACCTATGTTATCAGAAATCCAAGATACATTGATACACGCATGGATGAGGTATTTCCAGTAAAAAATCTAGGCTTAGGATCTTATCTGGAAGACATAACGCCAAGGTCAGTGAACTTCTCTTACATACTTTGTTGCAGAATGTATTGATATTAAATGTATTGAAATAATTGCATTTAGTTTATATCAATTACTTTATTACATTTAGGAAAATAGTCAGATGGAGCAGGCTAGCAGTTTCATGAATATATCTTTGCTTTCAAATTTGGCTACAAGTCAGTGGTAAGAGCTTTGTCTTGATGTCTTTCTGCTTACTTCAGTGATTTCTAATTGTTTCTTCTGTAGAAGTCGAGTTACATAATTATTTCTAATTGTTTCTTCTGTAGAAGTTGAGTTACATAATTTGTTTAATCATTACTTGCAGTAAGGGGAGTTCTGTGGGTTCTGCTGATGTTTCCCATGATAAGACATCTTCTCAAACAGTTGAGAACAGTAGCCAAAGCATATTTCGAAGTGTCACTGAGCTCTCATCTGGCAGTGACAAATTGACAGGCTTGACATGCATAGATATGGTAGAATTCTGGAAGCAATGTTTGATTTGTTTTATTTATATCAAATATCTTTTGAAGTTTTTTTTTTTTTGCAATTGTATAGGGTAAAGCATTAAAAGGACTTGCTGCTCGTGAAACCAATGCAGTTTCTAGTTTACCATCGTACTCTTCCAAGAGATCCACGATGCTTCATCTGCTTATTCTAGTGATTTCTGCAGTGAAAGCTGCATACTAG

mRNA sequence

ATGGCAAAAGTCGCTGCTCCAAGTTCGTTACCTTCAGCTTCTCATGATATTGCCGGAGGAGCTCTAAAGACTGGGAAATCAATTAGAAGAAAGACCCCATCAGAACTAAGGGGAGAACAGTTAAAGAGAACAAATGATTTGGATCTTTTGGACGAATCTCCTTCCACTGTTTTTGCTTCTAACAGAAATCCAAGATACATTGATACACGCATGGATGAGGTATTTCCAGTAAAAAATCTAGGCTTAGGATCTTATCTGGAAGACATAACGCCAAGTAAGGGGAGTTCTGTGGGTTCTGCTGATGTTTCCCATGATAAGACATCTTCTCAAACAGTTGAGAACAGTAGCCAAAGCATATTTCGAAGTGTCACTGAGCTCTCATCTGGCAGTGACAAATTGACAGGCTTGACATGCATAGATATGGGTAAAGCATTAAAAGGACTTGCTGCTCGTGAAACCAATGCAGTTTCTAGTTTACCATCGTACTCTTCCAAGAGATCCACGATGCTTCATCTGCTTATTCTAGTGATTTCTGCAGTGAAAGCTGCATACTAG

Coding sequence (CDS)

ATGGCAAAAGTCGCTGCTCCAAGTTCGTTACCTTCAGCTTCTCATGATATTGCCGGAGGAGCTCTAAAGACTGGGAAATCAATTAGAAGAAAGACCCCATCAGAACTAAGGGGAGAACAGTTAAAGAGAACAAATGATTTGGATCTTTTGGACGAATCTCCTTCCACTGTTTTTGCTTCTAACAGAAATCCAAGATACATTGATACACGCATGGATGAGGTATTTCCAGTAAAAAATCTAGGCTTAGGATCTTATCTGGAAGACATAACGCCAAGTAAGGGGAGTTCTGTGGGTTCTGCTGATGTTTCCCATGATAAGACATCTTCTCAAACAGTTGAGAACAGTAGCCAAAGCATATTTCGAAGTGTCACTGAGCTCTCATCTGGCAGTGACAAATTGACAGGCTTGACATGCATAGATATGGGTAAAGCATTAAAAGGACTTGCTGCTCGTGAAACCAATGCAGTTTCTAGTTTACCATCGTACTCTTCCAAGAGATCCACGATGCTTCATCTGCTTATTCTAGTGATTTCTGCAGTGAAAGCTGCATACTAG

Protein sequence

MAKVAAPSSLPSASHDIAGGALKTGKSIRRKTPSELRGEQLKRTNDLDLLDESPSTVFASNRNPRYIDTRMDEVFPVKNLGLGSYLEDITPSKGSSVGSADVSHDKTSSQTVENSSQSIFRSVTELSSGSDKLTGLTCIDMGKALKGLAARETNAVSSLPSYSSKRSTMLHLLILVISAVKAAY

Homology

[Close]

BLAST of Lag0040766 vs. NCBI nr
Match: XP_023527704.1 (protein downstream neighbor of Son-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527705.1 protein downstream neighbor of Son-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527706.1 protein downstream neighbor of Son-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-52
Identity = 135/207 (65.22%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 1   MAKVAAPSSLPSASHDIAGGALKTGKSIRRKTPSELRGEQLKRTNDLDLLDESPSTVFAS 60
           M +V APSSLPSASHDIAGGA KTGKS RRKTPSELRGEQLKR+N+LD  DESPSTVFAS
Sbjct: 1   MTQVVAPSSLPSASHDIAGGAPKTGKSNRRKTPSELRGEQLKRSNNLDPSDESPSTVFAS 60

Query: 61  N-------------RNPRYIDTRMDEVFPVKNLGLG-----------------------S 120
           N             RNP+YIDTRMDEVFPVK   L                        S
Sbjct: 61  NNALVNGFKKPGLLRNPKYIDTRMDEVFPVKKSRLRILSGKDNAKENNMMEQASSFLNMS 120

Query: 121 YLEDITPS--KGSSVGSADVSHDKT--SSQTVENSSQSIFRSVTELSSGSDKLTGLTCID 168
            L ++T S  KG+SVG ADV+HDKT  SSQT+ENSSQSIFRSVT+LSSG DK TGLT ID
Sbjct: 121 MLSNLTTSQCKGNSVGPADVAHDKTDKSSQTIENSSQSIFRSVTQLSSGGDKSTGLTSID 180

[Close]

BLAST of Lag0040766 vs. NCBI nr
Match: XP_022934041.1 (protein downstream neighbor of Son-like isoform X1 [Cucurbita moschata] >XP_022934042.1 protein downstream neighbor of Son-like isoform X1 [Cucurbita moschata] >XP_022934043.1 protein downstream neighbor of Son-like isoform X1 [Cucurbita moschata] >XP_022934044.1 protein downstream neighbor of Son-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-52
Identity = 135/207 (65.22%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 1   MAKVAAPSSLPSASHDIAGGALKTGKSIRRKTPSELRGEQLKRTNDLDLLDESPSTVFAS 60
           M +V APSSLPSASHDIAGGA KTGKS RRKTPSELRGEQLKR+N+LD  DESPSTVFAS
Sbjct: 1   MTQVVAPSSLPSASHDIAGGAPKTGKSNRRKTPSELRGEQLKRSNNLDPSDESPSTVFAS 60

Query: 61  N-------------RNPRYIDTRMDEVFPVKNLGLG-----------------------S 120
           N             RNP+YIDTRMDEVFPVK   L                        S
Sbjct: 61  NNALVNGFKKPGLLRNPKYIDTRMDEVFPVKKSRLRILSGKDNAKENNMMEQASSFLNMS 120

Query: 121 YLEDITPS--KGSSVGSADVSHDKT--SSQTVENSSQSIFRSVTELSSGSDKLTGLTCID 168
            L ++T S  KG+SVG ADV+HDKT  SSQT+ENSSQSIFRSVT+LSSG DK TGLT ID
Sbjct: 121 MLSNLTTSQCKGNSVGPADVAHDKTDKSSQTIENSSQSIFRSVTQLSSGGDKSTGLTSID 180

[Close]

BLAST of Lag0040766 vs. NCBI nr
Match: XP_023527707.1 (protein downstream neighbor of Son-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-52
Identity = 135/207 (65.22%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 1   MAKVAAPSSLPSASHDIAGGALKTGKSIRRKTPSELRGEQLKRTNDLDLLDESPSTVFAS 60
           M +V APSSLPSASHDIAGGA KTGKS RRKTPSELRGEQLKR+N+LD  DESPSTVFAS
Sbjct: 1   MTQVVAPSSLPSASHDIAGGAPKTGKSNRRKTPSELRGEQLKRSNNLDPSDESPSTVFAS 60

Query: 61  N-------------RNPRYIDTRMDEVFPVKNLGLG-----------------------S 120
           N             RNP+YIDTRMDEVFPVK   L                        S
Sbjct: 61  NNALVNGFKKPGLLRNPKYIDTRMDEVFPVKKSRLRILSGKDNAKENNMMEQASSFLNMS 120

Query: 121 YLEDITPS--KGSSVGSADVSHDKT--SSQTVENSSQSIFRSVTELSSGSDKLTGLTCID 168
            L ++T S  KG+SVG ADV+HDKT  SSQT+ENSSQSIFRSVT+LSSG DK TGLT ID
Sbjct: 121 MLSNLTTSQCKGNSVGPADVAHDKTDKSSQTIENSSQSIFRSVTQLSSGGDKSTGLTSID 180

[Close]

BLAST of Lag0040766 vs. NCBI nr
Match: XP_022934045.1 (protein downstream neighbor of Son-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-52
Identity = 135/207 (65.22%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 1   MAKVAAPSSLPSASHDIAGGALKTGKSIRRKTPSELRGEQLKRTNDLDLLDESPSTVFAS 60
           M +V APSSLPSASHDIAGGA KTGKS RRKTPSELRGEQLKR+N+LD  DESPSTVFAS
Sbjct: 1   MTQVVAPSSLPSASHDIAGGAPKTGKSNRRKTPSELRGEQLKRSNNLDPSDESPSTVFAS 60

Query: 61  N-------------RNPRYIDTRMDEVFPVKNLGLG-----------------------S 120
           N             RNP+YIDTRMDEVFPVK   L                        S
Sbjct: 61  NNALVNGFKKPGLLRNPKYIDTRMDEVFPVKKSRLRILSGKDNAKENNMMEQASSFLNMS 120

Query: 121 YLEDITPS--KGSSVGSADVSHDKT--SSQTVENSSQSIFRSVTELSSGSDKLTGLTCID 168
            L ++T S  KG+SVG ADV+HDKT  SSQT+ENSSQSIFRSVT+LSSG DK TGLT ID
Sbjct: 121 MLSNLTTSQCKGNSVGPADVAHDKTDKSSQTIENSSQSIFRSVTQLSSGGDKSTGLTSID 180

[Close]

BLAST of Lag0040766 vs. NCBI nr
Match: KAG6580781.1 (40S ribosomal protein S5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.9 bits (546), Expect = 5.7e-52
Identity = 135/207 (65.22%), Postives = 146/207 (70.53%), Query Frame = 0


Query: 1   MAKVAAPSSLPSASHDIAGGALKTGKSIRRKTPSELRGEQLKRTNDLDLLDESPSTVFAS 60
           M +V APSSLPSASHDIAGGA KTGKS RRKTPSELRGEQLKR+N+LD  DESPSTVFAS
Sbjct: 1   MTQVVAPSSLPSASHDIAGGAPKTGKSNRRKTPSELRGEQLKRSNNLDPSDESPSTVFAS 60

Query: 61  N-------------RNPRYIDTRMDEVFPVKNLGLG-----------------------S 120
           N             RNP+YIDTRMDEVFPVK   L                        S
Sbjct: 61  NNALVNGFKKPGLLRNPKYIDTRMDEVFPVKKSRLRILSGKDNAKENNMMEQASSFLNMS 120

Query: 121 YLEDITPS--KGSSVGSADVSHDKT--SSQTVENSSQSIFRSVTELSSGSDKLTGLTCID 168
            L ++T S  KG+SVG ADV+HDKT  SSQT+ENSSQSIFRSVT+LSSG DK TGLT ID
Sbjct: 121 MLSNLTTSQCKGNSVGPADVAHDKTDKSSQTIENSSQSIFRSVTQLSSGGDKSTGLTSID 180

The following BLAST results are available for this feature:

BLAST of Lag0040766 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527704.1	5.7e-52	65.22	protein downstream neighbor of Son-like isoform X1 [Cucurbita pepo subsp. pepo] ...	[more]
XP_022934041.1	5.7e-52	65.22	protein downstream neighbor of Son-like isoform X1 [Cucurbita moschata] >XP_0229...	[more]
XP_023527707.1	5.7e-52	65.22	protein downstream neighbor of Son-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022934045.1	5.7e-52	65.22	protein downstream neighbor of Son-like isoform X2 [Cucurbita moschata]	[more]
KAG6580781.1	5.7e-52	65.22	40S ribosomal protein S5, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0040766 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040766.1	Lag0040766.1	mRNA