Lag0040750 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040750
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	chr13: 7906810 .. 7909279 (+)
RNA-Seq Expression	Lag0040750
Synteny	Lag0040750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGGAGGAGGTTTTTCCGCCGCGAAACCAGGGAGGAGGAAGGTCTTCCTCCCTCCTCTTTCGTTTCCAGTGAAACTGAGGAGGGAGGTCCCACATTCCTTTTCGATGTCGGCGACGCTCTCCCCCTCCCTCTTTTTACTAAAAAAAAAATTAAAAAAACAGAAAGGAAGAAATAGGGAAAGAAAACAAGAAAGAAAGGAAAAGAACATTAAAAAAAAAAAAAAAATTTGTCGGCGGCCGGTCGTCGACGACTAGTTGGTGGTGTGAAGGTGGTTGAAGAAAAAGAAGGAGGATGGTGGTGAAGGGGTTGAAGGAGAAAAAGAAAAAAGAAATAAAAACTAATATTTTTATTATTTTTATTTTAAAAATGAAAAAAAAATAAAAAAAAAATAGGTGTCACATCATCCATCTGTTAAAATCTAATGGAAAAATGGAGGGAGGGACTAAAATGAAACAAAATCCAAATCTCTAGGCCCCGTTTGATAACCATTTTGTTTTTTAAAATTATGCTTGTTTTCTCTTCATTTCTTTACCATAATTTTCATCTTTGTTAATGAGACATTAGAGTTCTTAGGCAAATTCCAAAAATAAAAACAAGTTTTTGAAATCTACCTTTTTTTTTTTCCAAAATTTGAGTTGGGTTTTGAAAACATGGGAAGGAGGTAGGTAGCAAACCAAAGGAATATATAGGTGGAAAAAGGATTATAACCTTAATTTTCAAAAATAAAAAACTAAATGGTTATCAAATGGAGCCTAAATGTCATCATACAATTTGATGTGGGTTGAGCCTCTTGGCATATCCAAGATTTTCATGACTCTAACACGGAGCAAAATACACATTTGACAGAGGTCTGAAAAATTATTTCAGAAAGTTTAAAAAATATATATATTTTAGATGGATTTTGAGTTTATTTGACTGTCAGTTCGTTCGTTCAAACACTTACGTGGGCCGACTTCAATGACATTTTTGGGCCAAGCCCATGCTCTAAAAAAAAACAGGTCAGGCCCAATTTCCAAATTGACCATTGAAGGCCATATCTAACAACTCCATTTTACAAACCCTAATTCGGCCGCAACCTTCCATCTCGCTACTCCTCTCTTCACAGGTATGAATCTGCTTTCTTCGTGCCATTGCTGCTAATATTTGCCTCTTTCTTCCTTCCTGCTTCTGTGTTTTCTTCTCAGTTTCATTGTTTCTTGCTGCCAGCAGGTCGGTTATTTTGGTCCAGGGTCTTCAGCAATGGCTCCTAAAGGTATGCCCGCATTCTGATTTCGTGTTCATCTGAGTACGAGTTGTTCGTTTGCTCGAATTTGTGCTTCAATTGTTTTTAATCCGAGCTCGGTTCCTTAAAGGCGTTTCCAGTATTCGAAACCTAGTTTCTGAAATCTACTTCTGCTCTGAACTACAAGAATTGGTGTGAATAGATGTTTGTTCTTCGTTCATTATATGATTGGCGGATGGGATTTAAGTATGCATTAACTAAGAGGAGAGTAGTTAGTTGAAGATAATCCTCTCTATATTTTTCAGTTTGTTCCGGATTTAAGTACTCTCGATTGCATTAGATGCACCTCCTTTCAAGTGTTTTAGATGGTACTTTTAGACAACATCTTGAGATGTTTTAGTTGTTATTTTCTATGTGCGAATTGTTTTAAGTATACTGGTGGAATCTGATCTGCTCTGAGTAATTTTGAGCTCCTTAATAGAAAGGTTTTTATTTTGTCTTTTGCAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGGCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGACAGGAATCCCAAGTATCCTAGGATCAGTGCAACTCCAAGGAACAAGTTGGACCAGTATCAAATTCTTAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTCGACATTCGTGCTGACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACCTTAGTCAGGTAATACATAGTTCAGAAACTTTGATGAATAACAATTGAGAACCTACATTTGCTATTTTAAGTATTCATCATCATTTAGAAAGAAACTTGGTATAATACACAATGAAGAATAATTCAGATAATGCCTTCTAGCTTTACAGATTGAAACACCTCAGCTATAATTTCATGGTTGGTTGTTTGGGCCTGATCATGTTGATTATTACAAAGTCTCTATTGATTAAAACATTCTTATGATGAATGAGAATAATTGATGTCCTAATTTATGATCCTACATTCCTGATATGCAGGCCCGATGGAACGAAGAAGGCATACGTGAGGTTAACTCCCGATTATGATGCCCTAGATGTGGCGAACAAGATTGGTATCATCTAA

mRNA sequence

ATGGGAGGGAGGAGGTTTTTCCGCCGCGAAACCAGGGAGGAGGAAGGTCTTCCTCCCTCCTCTTTCGTTTCCAGTGAAACTGAGGAGGGAGGTCCCACATTCCTTTTCGATGTCGGTTATTTTGGTCCAGGGTCTTCAGCAATGGCTCCTAAAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGGCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGACAGGAATCCCAAGTATCCTAGGATCAGTGCAACTCCAAGGAACAAGTTGGACCAGTATCAAATTCTTAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTCGACATTCGTGCTGACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACCTTAGTCAGGCCCGATGGAACGAAGAAGGCATACGTGAGGTTAACTCCCGATTATGATGCCCTAGATGTGGCGAACAAGATTGGTATCATCTAA

Coding sequence (CDS)

ATGGGAGGGAGGAGGTTTTTCCGCCGCGAAACCAGGGAGGAGGAAGGTCTTCCTCCCTCCTCTTTCGTTTCCAGTGAAACTGAGGAGGGAGGTCCCACATTCCTTTTCGATGTCGGTTATTTTGGTCCAGGGTCTTCAGCAATGGCTCCTAAAGCTGACAGCAGCAAAAAGGCTGATCCTAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGGCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGACAGGAATCCCAAGTATCCTAGGATCAGTGCAACTCCAAGGAACAAGTTGGACCAGTATCAAATTCTTAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTTTTTATTGTCGACATTCGTGCTGACAAGAAAAAGATTAAGGATGCTGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTGAACACCTTAGTCAGGCCCGATGGAACGAAGAAGGCATACGTGAGGTTAACTCCCGATTATGATGCCCTAGATGTGGCGAACAAGATTGGTATCATCTAA

Protein sequence

MGGRRFFRRETREEEGLPPSSFVSSETEEGGPTFLFDVGYFGPGSSAMAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

[Close]

BLAST of Lag0040750 vs. NCBI nr
Match: KAG7031627.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.9 bits (777), Expect = 1.0e-78
Identity = 160/169 (94.67%), Postives = 163/169 (96.45%), Query Frame = 0


Query: 32  PTFLFDVGYFGPGSSAMAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFH 91
           P+F   V Y GPGSSAMAPKADS KKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFH
Sbjct: 17  PSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFH 76

Query: 92  RPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 151
           RPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK
Sbjct: 77  RPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 136

Query: 152 KIKDAVKKMYDIQTKKVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KIKDAVKKMYDIQTKKVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 137 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 185

[Close]

BLAST of Lag0040750 vs. NCBI nr
Match: KAG6600068.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-78
Identity = 159/167 (95.21%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 34  FLFDVGYFGPGSSAMAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRP 93
           F  +VGY GPGSSAMAPKADSSKKADPKAQALK AKAVKAGPTFK KAKKIRTSVTFHRP
Sbjct: 38  FEIEVGYSGPGSSAMAPKADSSKKADPKAQALKAAKAVKAGPTFKPKAKKIRTSVTFHRP 97

Query: 94  KTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKI 153
           KTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKI
Sbjct: 98  KTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKI 157

Query: 154 KDAVKKMYDIQTKKVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KDAVKKMYDIQTKKVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 158 KDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 204

[Close]

BLAST of Lag0040750 vs. NCBI nr
Match: KAG6601015.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.4 bits (760), Expect = 9.5e-77
Identity = 156/166 (93.98%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 32  PTFLFDVGYFGPGSSAMAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFH 91
           P+F   V Y GPGSSAMAPKAD+ KKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFH
Sbjct: 242 PSFSSKVDYSGPGSSAMAPKADTIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFH 301

Query: 92  RPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 151
           RPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK
Sbjct: 302 RPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 361

Query: 152 KIKDAVKKMYDIQTKKVNTLVRPDGTKKAYVRLTPDYDALDVANKI 198
           KIKDAVKKMYDIQTKKVNTL+RPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 362 KIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKI 407

[Close]

BLAST of Lag0040750 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 288.5 bits (737), Expect = 4.4e-74
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 48  MAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 107
           MAPKADSSKKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 108 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 167
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 168 VNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           VNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Lag0040750 vs. NCBI nr
Match: XP_022957518.1 (60S ribosomal protein L23a-like [Cucurbita moschata])

HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 48  MAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 107
           MAPKADS KKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 108 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 167
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 168 VNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           VNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Lag0040750 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-67
Identity = 138/154 (89.61%), Postives = 144/154 (93.51%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           MAP KAD SKK+DPKAQA K AKAVK+G T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-67
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D +KK+D KAQALKTAKAVK+G T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 2.1e-66
Identity = 137/154 (88.96%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 48  MAPKADSSKKADPKAQALKTAKAVKAG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           MAP A  +KK D KAQALK AKAVK+G  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of Lag0040750 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 252.7 bits (644), Expect = 3.5e-66
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D++KKADPKA+ALK AKAVK+G  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.9e-65
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D +KKADPKA+ALK AKAVK+G   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. ExPASy TrEMBL
Match: A0A0A0KS61 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 6.7e-76
Identity = 155/169 (91.72%), Postives = 159/169 (94.08%), Query Frame = 0


Query: 32  PTFLFDVGYFGPGSSAMAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFH 91
           P     V + G GSSAMAPKADSSKKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFH
Sbjct: 44  PFLSSQVSFSGQGSSAMAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFH 103

Query: 92  RPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKK 151
           RPKTLKKDRNPKYPRIS TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK
Sbjct: 104 RPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKK 163

Query: 152 KIKDAVKKMYDIQTKKVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
            IKDAVKKMYDIQTKKVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 164 NIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212

[Close]

BLAST of Lag0040750 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.1e-74
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 48  MAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 107
           MAPKADSSKKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 108 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 167
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 168 VNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           VNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Lag0040750 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 149/153 (97.39%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 48  MAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 107
           MAPKAD++KKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 108 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 167
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 168 VNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           VNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Lag0040750 vs. ExPASy TrEMBL
Match: A0A6J1H0G0 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458895 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 150/153 (98.04%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 48  MAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 107
           MAPKADS KKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 108 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 167
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 168 VNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           VNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Lag0040750 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.0e-73
Identity = 148/153 (96.73%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 48  MAPKADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 107
           MAPKADS+KKADPKAQALKTAKAVK+GPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 108 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 167
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 168 VNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           VNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of Lag0040750 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 252.7 bits (644), Expect = 2.5e-67
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D++KKADPKA+ALK AKAVK+G  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 252.7 bits (644), Expect = 2.5e-67
Identity = 135/154 (87.66%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D++KKADPKA+ALK AKAVK+G  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D +KKADPKA+ALK AKAVK+G   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 249.2 bits (635), Expect = 2.8e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D +KKADPKA+ALK AKAVK+G   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of Lag0040750 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 237.7 bits (605), Expect = 8.3e-63
Identity = 130/154 (84.42%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 48  MAP-KADSSKKADPKAQALKTAKAVKAGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 107
           M+P K D +KKADPKA+ALK AKAVK+G        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 108 ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 167
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 168 KVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII 201
           KVNTL+RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of Lag0040750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031627.1	1.0e-78	94.67	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6600068.1	3.0e-78	95.21	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6601015.1	9.5e-77	93.98	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022995723.1	4.4e-74	98.69	60S ribosomal protein L23a [Cucurbita maxima]	[more]
XP_022957518.1	2.2e-73	98.04	60S ribosomal protein L23a-like [Cucurbita moschata]	[more]

BLAST of Lag0040750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07761	1.1e-67	89.61	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
Q9AT35	1.9e-67	89.61	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
O22644	2.1e-66	88.96	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	3.5e-66	87.66	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
Q9M3C3	3.9e-65	87.01	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]

BLAST of Lag0040750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS61	6.7e-76	91.72	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180...	[more]
A0A6J1K8U2	2.1e-74	98.69	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1DJ76	1.1e-73	97.39	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1H0G0	1.1e-73	98.04	50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3C5W3	4.0e-73	96.73	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Lag0040750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	2.5e-67	87.66	ribosomal protein L23AA	[more]
AT2G39460.2	2.5e-67	87.66	ribosomal protein L23AA	[more]
AT3G55280.1	2.8e-66	87.01	ribosomal protein L23AB	[more]
AT3G55280.2	2.8e-66	87.01	ribosomal protein L23AB	[more]
AT3G55280.3	8.3e-63	84.42	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 124..200 e-value: 2.6E-28 score: 96.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 81..200 e-value: 2.2E-52 score: 178.2
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 61..109 e-value: 7.2E-18 score: 64.5
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 120..181 e-value: 6.3E-14 score: 52.1
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 48..200
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 120..200 score: 22.225964
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR11620:SF78	60S RIBOSOMAL PROTEIN L23A-2	coord: 48..200
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 178..193
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 118..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040750.1	Lag0040750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome