Lag0040748 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040748
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDUF674 domain-containing protein
Locationchr13: 7884699 .. 7885088 (-)
RNA-Seq ExpressionLag0040748
SyntenyLag0040748
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTGAAAAAGGATGGCATGGTGGGCTGCTTGGGAAATCTAGACGAGAGTGTAGAAACCTTGGACCAAGCCTATTTGCAATCAGATCAAAGCAAAGATATAGTCTTTAAACCCAAAGTCTTATTCAATTGTTTGACCGAACTCTTGGCTGATGTTGATATCCTAGCTGCACCTAGACGACTTACAATATATAGGTGCAATTCAAATTCTTATGTAACCTGCCTTGGTTACATTTTTGATACCCCTAATGCAAGTTGTCCAAAATGTCGCGGTTACCTGAGGGAAAATTGTGCATATGTGACTGCGCCTCCAACTGCAGGAAATCGACCAGCTCCCGGGGGCGGATTTGTGAAGGTTTTGGCAACTTACATTCTGATGGATGACTAA

mRNA sequence

ATGCTGTTGAAAAAGGATGGCATGGTGGGCTGCTTGGGAAATCTAGACGAGAGTGTAGAAACCTTGGACCAAGCCTATTTGCAATCAGATCAAAGCAAAGATATAGTCTTTAAACCCAAAGTCTTATTCAATTGTTTGACCGAACTCTTGGCTGATGTTGATATCCTAGCTGCACCTAGACGACTTACAATATATAGGTGCAATTCAAATTCTTATGTAACCTGCCTTGGTTACATTTTTGATACCCCTAATGCAAGTTGTCCAAAATGTCGCGGTTACCTGAGGGAAAATTGTGCATATGTGACTGCGCCTCCAACTGCAGGAAATCGACCAGCTCCCGGGGGCGGATTTGTGAAGGTTTTGGCAACTTACATTCTGATGGATGACTAA

Coding sequence (CDS)

ATGCTGTTGAAAAAGGATGGCATGGTGGGCTGCTTGGGAAATCTAGACGAGAGTGTAGAAACCTTGGACCAAGCCTATTTGCAATCAGATCAAAGCAAAGATATAGTCTTTAAACCCAAAGTCTTATTCAATTGTTTGACCGAACTCTTGGCTGATGTTGATATCCTAGCTGCACCTAGACGACTTACAATATATAGGTGCAATTCAAATTCTTATGTAACCTGCCTTGGTTACATTTTTGATACCCCTAATGCAAGTTGTCCAAAATGTCGCGGTTACCTGAGGGAAAATTGTGCATATGTGACTGCGCCTCCAACTGCAGGAAATCGACCAGCTCCCGGGGGCGGATTTGTGAAGGTTTTGGCAACTTACATTCTGATGGATGACTAA

Protein sequence

MLLKKDGMVGCLGNLDESVETLDQAYLQSDQSKDIVFKPKVLFNCLTELLADVDILAAPRRLTIYRCNSNSYVTCLGYIFDTPNASCPKCRGYLRENCAYVTAPPTAGNRPAPGGGFVKVLATYILMDD
Homology
BLAST of Lag0040748 vs. NCBI nr
Match: XP_008465479.1 (PREDICTED: uncharacterized protein LOC103503094 [Cucumis melo] >KAA0062236.1 putative DNA polymerase zeta catalytic subunit [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 9.3e-33
Identity = 74/129 (57.36%), Postives = 95/129 (73.64%), Query Frame = 0

Query: 1   MLLKKDGMVGCLGNLDESVETLDQAYLQSDQSKDIVFKPKVLFNCLTELLADVDILAAPR 60
           MLLKK+GMVGCLGNL ESVETL+++YLQ +QS+D V KPK+LFN  T+LL +V + AA  
Sbjct: 45  MLLKKNGMVGCLGNLYESVETLNKSYLQPNQSRDTVLKPKILFNSFTKLLPNVHVPAAAT 104

Query: 61  RLTIYRCNSNSYVTCLGYIFDTPNASCPKCRGYLRENCAYVTAPPTAGNRPAPGGGFVKV 120
              I+ CN ++Y +C  Y+  + +A CPKC   L ++C YVT PP A N+PA GGG VK 
Sbjct: 105 PPAIFYCNGSTYSSCRAYVSYSSSAVCPKCDKKLSQSCTYVT-PPKAENQPASGGGSVKD 164

Query: 121 LATYILMDD 130
           LATYI+MDD
Sbjct: 165 LATYIVMDD 172

BLAST of Lag0040748 vs. NCBI nr
Match: XP_031741245.1 (uncharacterized protein LOC105435653 [Cucumis sativus] >KAE8647978.1 hypothetical protein Csa_000490 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-30
Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = 0

Query: 2   LLKKDGMVGCLGNLDESVETLDQAYLQSDQSKDIVFKPKVLFNCLTELLADVDIL-AAPR 61
           LLKKDGMVGCLGNL ESVETL+ +YLQ +QS+DIV KPK++FN  T+L+ +VD++ AA  
Sbjct: 46  LLKKDGMVGCLGNLYESVETLNNSYLQPNQSRDIVLKPKIVFNSFTKLMPNVDVVPAAAT 105

Query: 62  RLTIYRCNSNSYVTCLGYIFDTPNASCPKCRGYLRENCAYVTAPPTAGNRPAPGGGFVKV 121
              I+ C + SY  C GY+  + +A CP C   L + C YVT PP AGN+PAP  GFVK 
Sbjct: 106 PPAIFYCVTGSY--CRGYVSYSCSAFCPSCSKNLSQACRYVT-PPKAGNQPAPDRGFVKD 165

Query: 122 LATYILMDD 130
           LATYI+ DD
Sbjct: 166 LATYIVTDD 171

BLAST of Lag0040748 vs. NCBI nr
Match: XP_022138964.1 (uncharacterized protein LOC111010013 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-22
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 0

Query: 2   LLKKDGMVGCLGNLDESVETLDQAYLQSDQSKDIVFKPKVLF--NCLTELLADVDILAAP 61
           LLKK GMVGCLGNL ESVETL+  YLQ +QSKDI+ KPKV F  +  T LL ++D+ AA 
Sbjct: 46  LLKKQGMVGCLGNLYESVETLNDTYLQPNQSKDILLKPKVSFCGSSSTMLLPNIDLSAA- 105

Query: 62  RRLTIYRCNSNSYVTCLGYIFDTPNASCPKCRGYLRENCAYVTAPPTAGNRPAPG----G 121
              T Y CNS ++  C   + D PNA CPKC   + +   +V  P  +    A      G
Sbjct: 106 -ATTFYLCNSTAHANCRRSVSDGPNAICPKCNVPMTQVGTFVKPPSASATTVAAAKEDEG 165

Query: 122 GFVKVLATYILMDD 130
           GFVK + TY++MDD
Sbjct: 166 GFVKGVVTYMVMDD 177

BLAST of Lag0040748 vs. NCBI nr
Match: XP_038691099.1 (uncharacterized protein LOC119989564 [Tripterygium wilfordii])

HSP 1 Score: 107.5 bits (267), Expect = 9.0e-20
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = 0

Query: 2   LLKKDGMVGCLGNLDESVETLDQAYLQSDQSKDIVFKPKVLFNCLTELLADVDILAAPRR 61
           LLKK GMVG LGNL +S+E L+  YLQ DQSKD +  PKV  N  T+L   +  L + + 
Sbjct: 46  LLKKQGMVGTLGNLYQSIEDLNDTYLQPDQSKDTLLMPKVA-NSATDLPLLLPNLQSTKA 105

Query: 62  LTIYRCNSNSYVTCLGYIFDTPNASCPKCRGYLRENCAYVTAPPTAGNRPAPGGGFVKVL 121
             +YRCN NSY  C  Y+   P A CP+C+ YL +  A     P  G+  A  GG+VK +
Sbjct: 106 NNLYRCNRNSYSNCRMYVSGDPTAVCPQCK-YLMDTEATYVDKPNKGSSSAE-GGYVKGV 165

Query: 122 ATYILMDD 130
            TY++MDD
Sbjct: 166 VTYMIMDD 170

BLAST of Lag0040748 vs. NCBI nr
Match: XP_038691339.1 (uncharacterized protein LOC119989732 [Tripterygium wilfordii])

HSP 1 Score: 102.1 bits (253), Expect = 3.8e-18
Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 2   LLKKDGMVGCLGNLDESVETLDQAYLQSDQSKDIVFKPKVLFNCLTELLADVDILAAPRR 61
           LLK+ GMVG LGNL +S+E L+ AY+Q +QSKD +  PK+        L   D++++   
Sbjct: 46  LLKEKGMVGTLGNLYQSIEDLNDAYMQPNQSKDTLLMPKIANPATNMPLLLPDVVSSTDN 105

Query: 62  LTIYRCNSNSYVTCLGYIFDTPNASCPKCRGYLRENCAYVTAPPTAGNRPAPGGGFVKVL 121
              YRCN NSY  C  Y+ + PN  CP+C+  +     YV   P  G   +  GG+VK +
Sbjct: 106 -PFYRCNGNSYSNCRVYVSNDPNVVCPQCQHLMNFQATYV-KKPNKGASSSTEGGYVKGV 165

Query: 122 ATYILMDD 130
            TY++MDD
Sbjct: 166 VTYMIMDD 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008465479.19.3e-3357.36PREDICTED: uncharacterized protein LOC103503094 [Cucumis melo] >KAA0062236.1 put... [more]
XP_031741245.13.3e-3057.36uncharacterized protein LOC105435653 [Cucumis sativus] >KAE8647978.1 hypothetica... [more]
XP_022138964.11.5e-2248.51uncharacterized protein LOC111010013 [Momordica charantia][more]
XP_038691099.19.0e-2046.09uncharacterized protein LOC119989564 [Tripterygium wilfordii][more]
XP_038691339.13.8e-1840.63uncharacterized protein LOC119989732 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007750Protein of unknown function DUF674PFAMPF05056DUF674coord: 6..129
e-value: 7.5E-9
score: 35.0
IPR007750Protein of unknown function DUF674PANTHERPTHR33103OS01G0153900 PROTEINcoord: 2..129
NoneNo IPR availablePANTHERPTHR33103:SF77SUBFAMILY NOT NAMEDcoord: 2..129

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040748.1Lag0040748.1mRNA