Lag0040747 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040747
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty1-copia retrotransposon protein
Location	chr13: 7880139 .. 7883659 (+)
RNA-Seq Expression	Lag0040747
Synteny	Lag0040747

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCATCAAATCCAGGGAGCCTGATGGTGCACAAGCCAACGTTGTTGAAGCAGTGGTGGTGGAAGCCAACTTGGTGAAGAATAAATCAGACTGGATTCTTGACACCGGTGCCTCAGGAAACTTCTGCTCAAATCGAAGTTTGTTCCACGAGTTCCAAGACACTATCGATGGCAAATGCATATACATGGGAAACTCAGCCACTGCTGGAGTACTTGGGAAATGGAAGGTTCTCTTGAAACTTACTTCTGGAAAAATTTTATCTTTAAATGATATGTTATATGTTCCTTCATTGCGTAGGAATCTGGTGTCTGGAAGTCTGTTGAACAGAGCATGGCTTAGAGTTGTGTTTGAAGCTGACAAGGTGGTCATCACTAAAAATAGTGACTTTGTCGGAGGAGTTACATCATGGAAATCTGCAAAGCAGACGTGCATTGCGCGATCCACCATAGAGTCAGAGTTTATAGCTCTTGAGCTTGCAGGGCAAGAGGCGGAGTGGTTGAGAAGTTTACTTCAAGACGTACCACTGTGGGGGGCGTCTGTTCCAGTCTCCTTGCACTGTGATTCACAAGCAGCCATAGGAATTGCCAAAAGTAGTGTATATAATGGCAAGAGAAGGCATATACACCTGAGACATGGAGTTGTGAAACAGTTGTTGAAAAGTGGAATTATCTCCTTGGAGTATATGAGGTCTGGGAGGAATTTGACAGATTCTCTCACCAAAGGCCTAACAAGGAGAGTAATTCTAGAGTCCTCAACAAGTATGAGACTCAAATTGTTGAAATGAGTCCATAGCCCAGTATTTGGGTGGTCCAAGTACGGACTTGATGGACATATTTTGGAAAGTCTTCATAGCTCAAGATTTTGAGTGGTTTACTGCGGTAAACTTGATGAAGCATGACGTGATAGTGAAGGTGTGGCCGCCTTCTATGAAAGAGTGTAATGGATCTCTTTCTAGAGCTTTCACGATAACCCAAGGTGTTGTGTATGGCCTTAAAAATAACACTTGTTCTACTATTGTATCGCGGAATCAAGGGAAACTTGAGGATTCAAACGTGTTGTGGGGGTCTAAACCATGACTATTGAAAGTTCAAAAGGTAACTTACTTTCTCTATGATGGTTATTGCCTTACTTCACTATGCATTAATTCAAATCGAAAGATATTAATGCTTAAGTTTAATATCCTCCTTTGCTCAGAAAAATATTGCTTACCGCCATTCGTGGGGGATTGTTGGGAATGACTAGCATATTTGCTTGTATATTTTGGCTTTTCCTCGTTTTTTATTATGTTTGTCCCACATGGAAAGATTTGAAGTTGGGAGGAGTGTTTTTATACAATCACTCTTCCCTACTCTTGTGAAAGTGGTTAAAGGTGGTGCCTAAACCTCTTCTCACACGCGTGCGCCGCCGCCGGTCGAACGCATAATAAAGAGAGGGGCTTTATTATACCTTTTTGCCAAAATATTTTTTAATCATTCTCGATATCCCACGTGTCGGCAGCGTCTACGTCCACGTGTCAATCCGGCGTCCACACACTCCAACAGTTGACCAGTTCGTTTATTGACCGAGTTTGGTGCCTTTTTGCAAAGGCAGAGGAGTTGTTATGCGTGGACTCCTCCATGGCTGACACGTGGCAGTTGGACCCTGTTTTGTGGAAGACGGTTATTTTTGAAGCCTATAAAAGAAACTTCTGAGCAAAGTGGAAAGCATCAAATTCATTTTCATTCTTTCTATTTTCTCTTCTGATTCCAATTCTTCTCTCTCGAGTGCACGAACGAGGAGGGTGTTGTGTTAACCTTGGGGAGCAACCGACAATAACGATTTAGCACCATGGTCGTGGCGAAATTGCTTTCAAGGCAGTGGTTATCTCCACGACACAACAATTGCTTTTCTATTTTCTACTTACAAACCCTCCATTAGATAGAAAGGCTCAACATTTTCAGAAAACTTAACATCATTGTCAGTATGAGATCTGCGTCTTTTAAGGAAGGCATTCAAGAGAACTGTCTTCGACTGCAAAGAGGCCTCTAGTAATTCTACACCCTGAAAAATAACAAATTCATTCGCCAAATTTTGCTTCCAAGTTGCACCGTAGGTTCAATAAAAGATATAAATTAACTGACAAGTTAGAAACTTGGTCCCTACCATGGTTTGGACTTTAGCTCAACTTTAATTTGGTCCCTATTGTTTGAAGAAATCTAAAAAATATAGTCGTTGAATTGTGTTCTATCCACTCAAAAATTACCTATTTCTTTCCATTTTTTTATTTAGCCCTAAACTCTAACAAAGTCAACTAACCCAACTACTCAAATAGAGATTGGAACGATTGGTAGGACTTGTAAAGTTTGACTAAACCATAAGGACCAAAATGAAACGATTGAAACCATAGGCATCAAATCAAAACTACGCTCAAGTCATACAAAATACTAAATTGAAACATGGGGAATTGTGCTAAATGGCTACAAAAAAAAAGCATTCTTGATTTTTGGCTACGGAAGTTTGGATTTTGCAGGCATGGCTACCGACATTTTAGGGAACTGTTTACTGGATTATTTTGGACGTTTTTACCCTTGTATTTACGGTTATTTACAGACGCTGTTTACGTCATTTTCGACGACAGAGATGTGTTTTGGATGGTCAACGAATTTCAAAACGGTACATACAGGGGGTGTTGTGTAGTCGTTGACATCCCGAGTGTTAATACTGGTATACACCCCGTGGGGACAGTTTCAAAGGGAGTAAACTAATCCCTAAAATTTCGGGATTTTAGTATCTGTTTGTTGCAAATATAAGGGAAGGGAAACCAAACCGTTACCTATTTCAATTTTTTTTGGTACAGTCGTCGCGTAGGGGGAGAAACGACCGAGCATGCAAGGGATGGTTGTCGACGCGATGGATGAAGGTCGTTGGCACGACGGAGATGGTTCGTCGGCGTGGTATGAGAGGTAGGTAGTGTTATTCACTTTGTTTGGCGGTGGAAAATGGTGTGGAATAGAGGGTTCGGGGGTGTGGAATGCTCTCAAATGGTATGGAATGCTCTCAAGGGTTTCTACTTTTGGAGGAAGAAGATGGATGAGTGGGCTGCTGCATGAAGGCTATTCTGGTGGTGAGGGTGGGCGGTGACATGACGTTTTTACCCCTTGTATTTACGGTTATTTACAGACTCCGTTTACGTCATTTCCGAGGACAGAGATGTGTTTTGGATGGTGAACGAATTTCAAAACGGTACATACAGGGGTGCTGTGTAGTCGTTGACATCCCGAGTGTCAATACTGGTATACACCCCGTGGGGACAGTTTCAAAGGGAGTAAACTAAATCCCTAAAATCTAGGGATTTTAGTATCTGTTTGTTGCAAATATAAGGGGAGGGAAACGAAACTGTTACCTATTTCAATTTTTTTGGTACAGTCGTCGCGTAGGGGGAGAAACGACCGAGCATGCAAGAGATGGTTGTCGACGCGGCGGCTGAAGGTCGTTGACACGGCGGAGATGGTTCGTCGGCGTGGTGTGAGAGGTAGGTAG

mRNA sequence

ATGACCATCAAATCCAGGGAGCCTGATGGTGCACAAGCCAACGTTGTTGAAGCAGTGGTGGTGGAAGCCAACTTGGTGAAGAATAAATCAGACTGGATTCTTGACACCGGTGCCTCAGGAAACTTCTGCTCAAATCGAAGTTTGTTCCACGAGTTCCAAGACACTATCGATGGCAAATGCATATACATGGGAAACTCAGCCACTGCTGGAGTACTTGGGAAATGGAAGGTTCTCTTGAAACTTACTTCTGGAAAAATTTTATCTTTAAATGATATGTTATATGTTCCTTCATTGCGTAGGAATCTGGTGTCTGGAAGTCTGTTGAACAGAGCATGGCTTAGAGTTGTGTTTGAAGCTGACAAGGTGGTCATCACTAAAAATAGTGACTTTGTCGGAGGAGTTACATCATGGAAATCTGCAAAGCAGACGTGCATTGCGCGATCCACCATAGAGTCAGAGTTTATAGCTCTTGAGCTTGCAGGGCAAGAGGCGGAGTGGTTGAGAAGTTTACTTCAAGACGTACCACTGTGGGGGGCGTCTGTTCCAGTCTCCTTGCACTGTGATTCACAAGCAGCCATAGGAATTGCCAAAAGTAGTGTATATAATGGCAAGAGAAGGCATATACACCTGAGACATGGAGTTGTGAAACAGTTGTTGAAAAGTGGAATTATCTCCTTGGAGTATATGAGGTCTGGGAGGAATTTGACAGATTCTCTCACCAAAGGCCTAACAAGGAGAGTAATTCTAGAGTCCTCAACAACTCAAGATTTTGAGTGGTTTACTGCGGTAAACTTGATGAAGCATGACGTGATAGTGAAGGTGTGGCCGCCTTCTATGAAAGAGTGTAATGGATCTCTTTCTAGAGCTTTCACGATAACCCAAGCGTCTACGTCCACGTGTCAATCCGGCGTCCACACACTCCAACAGTTGACCAGTTCGTTTATTGACCGAGTTTGGTGCCTTTTTGCAAAGGCAGAGGAGTTGTTATGCGTGGACTCCTCCATGGCTGACACGTGGCAGTTGGACCCTGTTTTGTGGAAGACGGGGGAGAAACGACCGAGCATGCAAGGGATGGTTGTCGACGCGATGGATGAAGGTCGTTGGCACGACGGAGATGGTTCGTCGGCGTGGTATGAGAGACTCCGTTTACGTCATTTCCGAGGACAGAGATGTGTTTTGGATGGTGAACGAATTTCAAAACGGTACATACAGGGGTGCTGTGTAGTCGTTGACATCCCGAGTGTCAATACTGGTATACACCCCGTGGGGACAGTTTCAAAGGGATCGTCGCGTAGGGGGAGAAACGACCGAGCATGCAAGAGATGGTTGTCGACGCGGCGGCTGAAGGTCGTTGACACGGCGGAGATGGTTCGTCGGCGTGGTGTGAGAGGTAGGTAG

Coding sequence (CDS)

ATGACCATCAAATCCAGGGAGCCTGATGGTGCACAAGCCAACGTTGTTGAAGCAGTGGTGGTGGAAGCCAACTTGGTGAAGAATAAATCAGACTGGATTCTTGACACCGGTGCCTCAGGAAACTTCTGCTCAAATCGAAGTTTGTTCCACGAGTTCCAAGACACTATCGATGGCAAATGCATATACATGGGAAACTCAGCCACTGCTGGAGTACTTGGGAAATGGAAGGTTCTCTTGAAACTTACTTCTGGAAAAATTTTATCTTTAAATGATATGTTATATGTTCCTTCATTGCGTAGGAATCTGGTGTCTGGAAGTCTGTTGAACAGAGCATGGCTTAGAGTTGTGTTTGAAGCTGACAAGGTGGTCATCACTAAAAATAGTGACTTTGTCGGAGGAGTTACATCATGGAAATCTGCAAAGCAGACGTGCATTGCGCGATCCACCATAGAGTCAGAGTTTATAGCTCTTGAGCTTGCAGGGCAAGAGGCGGAGTGGTTGAGAAGTTTACTTCAAGACGTACCACTGTGGGGGGCGTCTGTTCCAGTCTCCTTGCACTGTGATTCACAAGCAGCCATAGGAATTGCCAAAAGTAGTGTATATAATGGCAAGAGAAGGCATATACACCTGAGACATGGAGTTGTGAAACAGTTGTTGAAAAGTGGAATTATCTCCTTGGAGTATATGAGGTCTGGGAGGAATTTGACAGATTCTCTCACCAAAGGCCTAACAAGGAGAGTAATTCTAGAGTCCTCAACAACTCAAGATTTTGAGTGGTTTACTGCGGTAAACTTGATGAAGCATGACGTGATAGTGAAGGTGTGGCCGCCTTCTATGAAAGAGTGTAATGGATCTCTTTCTAGAGCTTTCACGATAACCCAAGCGTCTACGTCCACGTGTCAATCCGGCGTCCACACACTCCAACAGTTGACCAGTTCGTTTATTGACCGAGTTTGGTGCCTTTTTGCAAAGGCAGAGGAGTTGTTATGCGTGGACTCCTCCATGGCTGACACGTGGCAGTTGGACCCTGTTTTGTGGAAGACGGGGGAGAAACGACCGAGCATGCAAGGGATGGTTGTCGACGCGATGGATGAAGGTCGTTGGCACGACGGAGATGGTTCGTCGGCGTGGTATGAGAGACTCCGTTTACGTCATTTCCGAGGACAGAGATGTGTTTTGGATGGTGAACGAATTTCAAAACGGTACATACAGGGGTGCTGTGTAGTCGTTGACATCCCGAGTGTCAATACTGGTATACACCCCGTGGGGACAGTTTCAAAGGGATCGTCGCGTAGGGGGAGAAACGACCGAGCATGCAAGAGATGGTTGTCGACGCGGCGGCTGAAGGTCGTTGACACGGCGGAGATGGTTCGTCGGCGTGGTGTGAGAGGTAGGTAG

Protein sequence

MTIKSREPDGAQANVVEAVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGNSATAGVLGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVITKNSDFVGGVTSWKSAKQTCIARSTIESEFIALELAGQEAEWLRSLLQDVPLWGASVPVSLHCDSQAAIGIAKSSVYNGKRRHIHLRHGVVKQLLKSGIISLEYMRSGRNLTDSLTKGLTRRVILESSTTQDFEWFTAVNLMKHDVIVKVWPPSMKECNGSLSRAFTITQASTSTCQSGVHTLQQLTSSFIDRVWCLFAKAEELLCVDSSMADTWQLDPVLWKTGEKRPSMQGMVVDAMDEGRWHDGDGSSAWYERLRLRHFRGQRCVLDGERISKRYIQGCCVVVDIPSVNTGIHPVGTVSKGSSRRGRNDRACKRWLSTRRLKVVDTAEMVRRRGVRGR

Homology

[Close]

BLAST of Lag0040747 vs. NCBI nr
Match: KAA0052404.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19230.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 294.3 bits (752), Expect = 1.9e-75
Identity = 172/370 (46.49%), Postives = 210/370 (56.76%), Query Frame = 0


Query: 4   KSREPDGAQANVVE------AVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTID 63
           +  E    QAN+VE      A +V ANL++NK+DWILDT AS  FC+NR L H+++DT D
Sbjct: 101 RPNEKPTPQANLVEQDNEIIATIVNANLIENKTDWILDTEASRYFCTNRELLHDYKDTAD 160

Query: 64  GKCIYMGNSATAGVLGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVF 123
           G+C++M NSAT GV+ K KV+LKLTSGK LSL+++LYV SL RNLVS SLLNRA L++V 
Sbjct: 161 GECVFMRNSATVGVIEKGKVILKLTSGKTLSLSNVLYVSSLHRNLVSESLLNRAGLKIVL 220

Query: 124 EADKVVITKNSDFV---------------------------------------------- 183
           E DKVV+TKN +FV                                              
Sbjct: 221 EGDKVVLTKNEEFVDKGYLSNGLFVLNIVSMNANASSFAYMIESVNLWHGSLGHVNFASI 280

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 281 RKLKDLRLINTSESHEIVRTSLDASKHLKKNKGDSVSQPEYAKIIDNDEVNSTSGYVFLL 340

Query: 244 -GGVTSWKSAKQTCIARSTIESEFIALELAGQEAEWLRSLLQDVPLWGASVPVSLHCDSQ 261
            GGV SWKSAKQTCIARST+ESEFIAL+LA QEAEW+++LL DVPLWG SVPVS+ CDSQ
Sbjct: 341 GGGVISWKSAKQTCIARSTMESEFIALKLAEQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ 400

[Close]

BLAST of Lag0040747 vs. NCBI nr
Match: TYK05191.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 5.3e-62
Identity = 156/350 (44.57%), Postives = 196/350 (56.00%), Query Frame = 0


Query: 12  QANVVE------AVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGN 71
           QAN+ E      A +VEANL++NK+DWILDT AS +FC+NR L H+++DT D +C++MGN
Sbjct: 109 QANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTADKECVFMGN 168

Query: 72  SATAGVLGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVIT 131
           SATAGV+GK KV+LKLTSGK LSL+++LYVPSLRRNLVSGSLLNRA L++V E DKVV+T
Sbjct: 169 SATAGVIGKGKVILKLTSGKNLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLT 228

Query: 132 KNSDFVG------GVTSWKSAKQTCIARST------------------------------ 191
           KN DFVG      G+    +      A S+                              
Sbjct: 229 KNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLEHVNFASIRKLKDLRL 288

Query: 192 ---------------IESEF-------------IALELAGQEAEWLRS------------ 251
                          +ES+F               LEL   +    R+            
Sbjct: 289 INTSETHETGKCPICVESKFHKKPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVS 348

Query: 252 -------------------LLQDVPLWGASVPVSLHCDSQAAIGIAKSSVYNGKRRHIHL 261
                               ++DVPLWG SVPVS+ CDSQAAI  AK+SVYNGK RHI L
Sbjct: 349 FVDDYSRFTKIYLIKTKNEAVRDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRL 408

[Close]

BLAST of Lag0040747 vs. NCBI nr
Match: PHU13801.1 (hypothetical protein BC332_15006 [Capsicum chinense])

HSP 1 Score: 218.8 bits (556), Expect = 1.0e-52
Identity = 124/264 (46.97%), Postives = 169/264 (64.02%), Query Frame = 0


Query: 12  QANVVE---------AVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIY 71
           QAN++E         A+  E NL  N  +W +D GA+ + C+N+ LF  F   +  K IY
Sbjct: 320 QANMIEFNKECDDLCAMFSECNLEGNPHEWWMDFGATLHVCANKELFSPFAPALVEKMIY 379

Query: 72  MGNSATAGVLGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKV 131
           M NSA A V    KV LK+TSGK+L+LN++LYVP LRRNL+S SLL++   + V  ++K+
Sbjct: 380 MANSAKAKVEETGKVGLKMTSGKVLTLNNVLYVPELRRNLISVSLLDKNGFKCVTVSEKI 439

Query: 132 VI----------------TKNSDFV----GGVTSWKSAKQTCIARSTIESEFIALELAGQ 191
           +I                T  S +V    GG  SWKS+KQTCIA+ST+ESEFIAL+ AG+
Sbjct: 440 IIRKGEVDANWITGSNEVTSTSGYVFTIGGGAVSWKSSKQTCIAQSTVESEFIALDKAGE 499

Query: 192 EAEWLRSLLQDVPLWGASV-PVSLHCDSQAAIGIAKSSVYNGKRRHIHLRHGVVKQLLKS 246
           EAEWL++ L+D+  W   V PV +HCDSQAAI  A S +YNGK  HI  RH  V++LL S
Sbjct: 500 EAEWLQNFLKDISYWPKPVAPVYIHCDSQAAISRAGSMMYNGKSCHIRRRHNTVRELLSS 559

[Close]

BLAST of Lag0040747 vs. NCBI nr
Match: XP_009784430.1 (PREDICTED: uncharacterized protein LOC104232850, partial [Nicotiana sylvestris])

HSP 1 Score: 204.9 bits (520), Expect = 1.5e-48
Identity = 120/303 (39.60%), Postives = 155/303 (51.16%), Query Frame = 0


Query: 25  LVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGNSATAGVLGKWKVLLKLTSG 84
           +V NK++W+LD GAS + C+N+ LFH+F+++ DG+C+YM NS T  V+GK K+LLKLTS 
Sbjct: 1   MVANKTNWMLDIGASRHLCANKELFHDFEESTDGECVYMCNSTTTRVMGKGKILLKLTSR 60

Query: 85  KILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVITKNSDFVG------------ 144
           K L+LN++LYVPSLRRNLVS +LLN+A L+++FE DKVVI++  DFVG            
Sbjct: 61  KALALNNVLYVPSLRRNLVSSALLNKAGLKLIFEYDKVVISRGGDFVGKGYLSGGLFVLN 120

Query: 145 ------------------------------------------------------------ 204
                                                                       
Sbjct: 121 ITQKITNNASTFNSAYISESIDLRHDILAPVRTPYDSSIHLRKNKEFSVSQTEYAKIIGR 180

Query: 205 ------------------------------------------GVTSWKSAKQTCIARSTI 213
                                                     G  SWKS+KQTCIA ST+
Sbjct: 181 VMFLMNYTRSDIAYAVSRLSRYTHNLSSEHWNALYRLLRYLRGTISWKSSKQTCIAGSTM 240

[Close]

BLAST of Lag0040747 vs. NCBI nr
Match: KAF3628742.1 (hypothetical protein FXO38_28084 [Capsicum annuum] >KAF3663115.1 hypothetical protein FXO37_12134 [Capsicum annuum])

HSP 1 Score: 199.5 bits (506), Expect = 6.3e-47
Identity = 108/229 (47.16%), Postives = 137/229 (59.83%), Query Frame = 0


Query: 14  NVVEAVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGNSATAGVLG 73
           N++ A+VV+ NLV NK++W+LDTG   +FC N+ LFH+F+++ + +CIYMGN  TA VL 
Sbjct: 98  NLIAALVVKTNLVSNKTEWMLDTGDLRHFCVNKELFHDFEESTNDECIYMGNFITAEVL- 157

Query: 74  KWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVITKNSDFVGG 133
                                                                      G
Sbjct: 158 -----------------------------------------------------------G 217

Query: 134 VTSWKSAKQTCIARSTIESEFIALELAGQEAEWLRSLLQDVPLWGASV-PVSLHCDSQAA 193
             SWKS+KQTCIA ST++SEFI ++L GQEAEWLR+LL DVPLWG  V PVSLHCDSQA 
Sbjct: 218 AISWKSSKQTCIACSTMKSEFITVKLTGQEAEWLRNLLTDVPLWGRQVSPVSLHCDSQAT 266

Query: 194 IGIAKSSVYNGKRRHIHLRHGVVKQLLKSGIISLEYMRSGRNLTDSLTK 242
           I IAK+SVYN K+RHI +R+ +VKQLLK G+ISLEY+RS RNL D + K
Sbjct: 278 IEIAKNSVYNSKKRHIRIRYDLVKQLLKDGVISLEYVRSERNLADPMIK 266

[Close]

BLAST of Lag0040747 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-14
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 0


Query: 130  FVGGVTSWKSAKQTCIARSTIESEFIALELAGQEAEWLRSLLQDVPLWGASVPVSLHCDS 189
            F GG  SW+S  Q C+A ST E+E+IA    G+E  WL+  LQ++ L      V  +CDS
Sbjct: 1200 FSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVV--YCDS 1259

Query: 190  QAAIGIAKSSVYNGKRRHIHLRHGVVKQLLKSGIISLEYMRSGRNLTDSLTKGLTR 246
            Q+AI ++K+S+Y+ + +HI +R+  +++++    + +  + +  N  D LTK + R
Sbjct: 1260 QSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPR 1313

HSP 2 Score: 55.1 bits (131), Expect = 2.5e-06
Identity = 40/135 (29.63%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 29  KSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGNSATAGVLGKWKVLLKLTSGKILS 88
           +S+W++DT AS +    R LF  +    D   + MGN++ + + G   + +K   G  L 
Sbjct: 291 ESEWVVDTAASHHATPVRDLFCRYV-AGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLV 350

Query: 89  LNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVITKNSDFVG-GV---TSWKSAKQTC 148
           L D+ +VP LR NL+SG  L+R      F   K  +TK S  +  GV   T +++  + C
Sbjct: 351 LKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEIC 410

Query: 149 IARSTIESEFIALEL 160
                   + I+++L
Sbjct: 411 QGELNAAQDEISVDL 424

[Close]

BLAST of Lag0040747 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-08
Identity = 32/107 (29.91%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 137  WKSAKQTCIARSTIESEFIALELAGQEAEWLRSLLQDVPLWGASVPVSLHCDSQAAIGIA 196
            W + +Q  +A S+ E+E++AL  A +EA WL+ LL  + +     P+ ++ D+Q  I IA
Sbjct: 1281 WNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI-KLENPIKIYEDNQGCISIA 1340

Query: 197  KSSVYNGKRRHIHLRHGVVKQLLKSGIISLEYMRSGRNLTDSLTKGL 244
             +   + + +HI +++   ++ +++ +I LEY+ +   L D  TK L
Sbjct: 1341 NNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPL 1386

[Close]

BLAST of Lag0040747 vs. ExPASy TrEMBL
Match: A0A5A7UAK1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00280 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 9.1e-76
Identity = 172/370 (46.49%), Postives = 210/370 (56.76%), Query Frame = 0


Query: 4   KSREPDGAQANVVE------AVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTID 63
           +  E    QAN+VE      A +V ANL++NK+DWILDT AS  FC+NR L H+++DT D
Sbjct: 101 RPNEKPTPQANLVEQDNEIIATIVNANLIENKTDWILDTEASRYFCTNRELLHDYKDTAD 160

Query: 64  GKCIYMGNSATAGVLGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVF 123
           G+C++M NSAT GV+ K KV+LKLTSGK LSL+++LYV SL RNLVS SLLNRA L++V 
Sbjct: 161 GECVFMRNSATVGVIEKGKVILKLTSGKTLSLSNVLYVSSLHRNLVSESLLNRAGLKIVL 220

Query: 124 EADKVVITKNSDFV---------------------------------------------- 183
           E DKVV+TKN +FV                                              
Sbjct: 221 EGDKVVLTKNEEFVDKGYLSNGLFVLNIVSMNANASSFAYMIESVNLWHGSLGHVNFASI 280

Query: 184 ------------------------------------------------------------ 243
                                                                       
Sbjct: 281 RKLKDLRLINTSESHEIVRTSLDASKHLKKNKGDSVSQPEYAKIIDNDEVNSTSGYVFLL 340

Query: 244 -GGVTSWKSAKQTCIARSTIESEFIALELAGQEAEWLRSLLQDVPLWGASVPVSLHCDSQ 261
            GGV SWKSAKQTCIARST+ESEFIAL+LA QEAEW+++LL DVPLWG SVPVS+ CDSQ
Sbjct: 341 GGGVISWKSAKQTCIARSTMESEFIALKLAEQEAEWIKNLLGDVPLWGTSVPVSIQCDSQ 400

[Close]

BLAST of Lag0040747 vs. ExPASy TrEMBL
Match: A0A5D3BZU0 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00640 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.6e-62
Identity = 156/350 (44.57%), Postives = 196/350 (56.00%), Query Frame = 0


Query: 12  QANVVE------AVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGN 71
           QAN+ E      A +VEANL++NK+DWILDT AS +FC+NR L H+++DT D +C++MGN
Sbjct: 109 QANLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTADKECVFMGN 168

Query: 72  SATAGVLGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVIT 131
           SATAGV+GK KV+LKLTSGK LSL+++LYVPSLRRNLVSGSLLNRA L++V E DKVV+T
Sbjct: 169 SATAGVIGKGKVILKLTSGKNLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLT 228

Query: 132 KNSDFVG------GVTSWKSAKQTCIARST------------------------------ 191
           KN DFVG      G+    +      A S+                              
Sbjct: 229 KNGDFVGKGYLSNGLFVLNTISMNANASSSAYLIESANLWHGRLEHVNFASIRKLKDLRL 288

Query: 192 ---------------IESEF-------------IALELAGQEAEWLRS------------ 251
                          +ES+F               LEL   +    R+            
Sbjct: 289 INTSETHETGKCPICVESKFHKKPFKPVEYRTTELLELIHSDLADFRTTTSRGGKNYYVS 348

Query: 252 -------------------LLQDVPLWGASVPVSLHCDSQAAIGIAKSSVYNGKRRHIHL 261
                               ++DVPLWG SVPVS+ CDSQAAI  AK+SVYNGK RHI L
Sbjct: 349 FVDDYSRFTKIYLIKTKNEAVRDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHIRL 408

[Close]

BLAST of Lag0040747 vs. ExPASy TrEMBL
Match: A0A2G3C502 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_15006 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.8e-53
Identity = 124/264 (46.97%), Postives = 169/264 (64.02%), Query Frame = 0


Query: 12  QANVVE---------AVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIY 71
           QAN++E         A+  E NL  N  +W +D GA+ + C+N+ LF  F   +  K IY
Sbjct: 320 QANMIEFNKECDDLCAMFSECNLEGNPHEWWMDFGATLHVCANKELFSPFAPALVEKMIY 379

Query: 72  MGNSATAGVLGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKV 131
           M NSA A V    KV LK+TSGK+L+LN++LYVP LRRNL+S SLL++   + V  ++K+
Sbjct: 380 MANSAKAKVEETGKVGLKMTSGKVLTLNNVLYVPELRRNLISVSLLDKNGFKCVTVSEKI 439

Query: 132 VI----------------TKNSDFV----GGVTSWKSAKQTCIARSTIESEFIALELAGQ 191
           +I                T  S +V    GG  SWKS+KQTCIA+ST+ESEFIAL+ AG+
Sbjct: 440 IIRKGEVDANWITGSNEVTSTSGYVFTIGGGAVSWKSSKQTCIAQSTVESEFIALDKAGE 499

Query: 192 EAEWLRSLLQDVPLWGASV-PVSLHCDSQAAIGIAKSSVYNGKRRHIHLRHGVVKQLLKS 246
           EAEWL++ L+D+  W   V PV +HCDSQAAI  A S +YNGK  HI  RH  V++LL S
Sbjct: 500 EAEWLQNFLKDISYWPKPVAPVYIHCDSQAAISRAGSMMYNGKSCHIRRRHNTVRELLSS 559

[Close]

BLAST of Lag0040747 vs. ExPASy TrEMBL
Match: A0A1U7XD95 (uncharacterized protein LOC104232850 OS=Nicotiana sylvestris OX=4096 GN=LOC104232850 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 7.2e-49
Identity = 120/303 (39.60%), Postives = 155/303 (51.16%), Query Frame = 0


Query: 25  LVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGNSATAGVLGKWKVLLKLTSG 84
           +V NK++W+LD GAS + C+N+ LFH+F+++ DG+C+YM NS T  V+GK K+LLKLTS 
Sbjct: 1   MVANKTNWMLDIGASRHLCANKELFHDFEESTDGECVYMCNSTTTRVMGKGKILLKLTSR 60

Query: 85  KILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVITKNSDFVG------------ 144
           K L+LN++LYVPSLRRNLVS +LLN+A L+++FE DKVVI++  DFVG            
Sbjct: 61  KALALNNVLYVPSLRRNLVSSALLNKAGLKLIFEYDKVVISRGGDFVGKGYLSGGLFVLN 120

Query: 145 ------------------------------------------------------------ 204
                                                                       
Sbjct: 121 ITQKITNNASTFNSAYISESIDLRHDILAPVRTPYDSSIHLRKNKEFSVSQTEYAKIIGR 180

Query: 205 ------------------------------------------GVTSWKSAKQTCIARSTI 213
                                                     G  SWKS+KQTCIA ST+
Sbjct: 181 VMFLMNYTRSDIAYAVSRLSRYTHNLSSEHWNALYRLLRYLRGTISWKSSKQTCIAGSTM 240

[Close]

BLAST of Lag0040747 vs. ExPASy TrEMBL
Match: A0A2N9FSN7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21608 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.8e-47
Identity = 120/347 (34.58%), Postives = 166/347 (47.84%), Query Frame = 0


Query: 12  QANVVEAVVVEANLVKNKSDWILDTGASGNFCSNRSLFHEFQDTIDGKCIYMGNSATAGV 71
           ++ V+ AVV + NLV N ++W++DTGA+ + CS++ LF  +++  DG+ +Y+G++ T  V
Sbjct: 251 ESEVIAAVVSKVNLVNNMTEWVVDTGATRHICSSKELFLNYEEATDGENVYLGDARTTRV 310

Query: 72  LGKWKVLLKLTSGKILSLNDMLYVPSLRRNLVSGSLLNRAWLRVVFEADKVVITKNSDFV 131
            GK KV LKLTSGK L+L+ +L+VP +RRNLVSGSLLN+A +++VF+ADK+V+T+N DFV
Sbjct: 311 AGKGKVFLKLTSGKSLALHFVLHVPDMRRNLVSGSLLNKAGIKLVFDADKLVLTRNGDFV 370

Query: 132 ------------------------------------------------------------ 191
                                                                       
Sbjct: 371 GKGYCYGGLFVLDANFDGMNNIAFLSEDDPKTYQEAMKSIDASFWKDAINSELESIMANH 430

Query: 192 ------------------------------------------------------------ 216
                                                                       
Sbjct: 431 TWELVDLPRGMQAYSRLSRYTHNPSHEHWTALTRLLRYLKGTMDLGLHFAGYPIVLEGYC 490

The following BLAST results are available for this feature:

BLAST of Lag0040747 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052404.1	1.9e-75	46.49	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK19230.1 ty1-cop...	[more]
TYK05191.1	5.3e-62	44.57	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
PHU13801.1	1.0e-52	46.97	hypothetical protein BC332_15006 [Capsicum chinense]	[more]
XP_009784430.1	1.5e-48	39.60	PREDICTED: uncharacterized protein LOC104232850, partial [Nicotiana sylvestris]	[more]
KAF3628742.1	6.3e-47	47.16	hypothetical protein FXO38_28084 [Capsicum annuum] >KAF3663115.1 hypothetical pr...	[more]

BLAST of Lag0040747 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.3e-14	35.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.6e-08	29.91	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Lag0040747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAK1	9.1e-76	46.49	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZU0	2.6e-62	44.57	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A2G3C502	4.8e-53	46.97	Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_15006 PE=4 SV=1	[more]
A0A1U7XD95	7.2e-49	39.60	uncharacterized protein LOC104232850 OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]
A0A2N9FSN7	6.8e-47	34.58	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21608 PE=4 SV=1	[more]

BLAST of Lag0040747 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 107..235
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 107..235
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 132..245 e-value: 2.87838E-39 score: 136.829

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040747.1	Lag0040747.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding