Lag0040702 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040702
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr13: 7475520 .. 7477296 (+)
RNA-Seq Expression	Lag0040702
Synteny	Lag0040702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTGAAGAGAATTGTGGGTGAGTTGTCGTCTCAAGAGTTTATTCCTGTCATCTGTTGTGATAGCCTGAGTGCTATTCGTCTTGCGAAGAATCCATCTCACCATGAACGGTCTAAACATAATGATGTTAAGTTGTTTCACTTTATAAGGGATATGATTTCTTATAATGAAGTTAAACTGGTGAAAGTTCATACAAATCAAAACTTGCCAGATATGCTTACCAAAGTTCTCACAGCTCATAGGTTTAAATACCTGTTAAATGAGTTGAATGTAAAGTCAAGGTGATAGGGAATTTAGAGAACCGACTTATTGCTTAAGTTATTCTATCGTCTGCTATGATGATGATGGAATTCACGAGTCATTATACACATGTTATATATGTTCATACATTAATGATCTTTTTTTTAGTTCAATAATTGTGGGAGTAGAGCTCAAATCATTGACCTTTTACATGGTAATTGATACTTATCCAATGAACTATGATCCAATCAACAATTATCAGTTATTTGATAATTATGTTTAGTTGTTTGGTCTCATTCTACTGGATAAAATCAGAACCAAATTATGTTTATTAAAAAAATGCTATGAATATGAGTTTGCATTAGTCTAAAATTATATAAATTAAAGTCTCACTTGGTCCCCAACGCGTTTAATTTTGGTCTTTAAAACAAGTTCATTTTATTTTGATCCTGAACTCTTAAAATGTCTATTTTAATTCAACTTTAAAAAGTTAACTATTTTTTAGTTCTTTGCCTTCATTTTGATGTTAATACAAATTGATGATGTAGTTTCAAGTATGTATATTGGCATATTAATATGAACATGATTTCAAGTCACATTGGACATTAGAAACGAACCTTGGACAAGTAGATATTAGATGAATAAATTATATAACTAGGACCAAAATGCTTTATTTTTTATAAATTGAAGGACCAAAATAGAACTTTTGTAAGATCAGGGATCAAAATAAACCAACTTGAAAGTTCAATCAATATTTTGAAAGTTTGAGAGACCAAAAAATAAACTTTCAGCCAAACAAAAATAAAATGCACCCTCGCTAATAAGTAGATTCAGCCACAAAAAATATCAGTTGTCACTAAAATGCCTTGATAATTAAAAAAAAAAAATCGTTGCAAATAATAGCCAAAAAAAAAACAAATGTGTCAAAATTAGATTTAGTAAGAAGAACAAAAAAAATTGCTTCTTCCATAAAAAGTAGAGACGATAAAAAAAAATTTATTGAAGGGTTTTGGTAAATTTAATCTTATATTAATACTTCAACGGTTAATACTAACAACAACTACTGCAAAACTTGATGTGTTGCTATTAAATAGATTCAATGACGAACGAGAAAATCATCATTAAAATATGGATATTTGATTTTGAATATATATATATATATATATATATATATATATATATATTTGAAAACTTGTGATCGAGTTTGATATTGAATAGAGAGATTTTTATATTGACATGCTTTCTTGACATTAAAATATGAGTTCATGATTTTGAAAATTTGAATAGACATATTGTTATAGGTAATTTTGGACTACCCGACGCGAGCCTAGAAATAGGATCGAAGGACGGACCCTGGAGAAGAAACGAGCCAAGGGGTCGAGCCAAGGCCAAAGAGATCAGGCTTTTGGTCCGACCCCATGGTCGGCCTCGGCCCGCTTGCGTGGGCCGAGTTCTTCCAACTCCGTTCAGTCCTTGTTGCCTCTGGCCGCCCCGGTTCTGCCTGGTTCGTCCTGCAACGCCTCCAAATTCCTAA

mRNA sequence

ATGTGGTTGAAGAGAATTGTGGGTGAGTTGTCGTCTCAAGAGTTTATTCCTGTCATCTGTTGTGATAGCCTGAGTGCTATTCGTCTTGCGAAGAATCCATCTCACCATGAACGGTCTAAACATAATGATGTTAAGTTGTTTCACTTTATAAGGGATATGATTTCTTATAATGAAGTTAAACTGGTGAAAGTTCATACAAATCAAAACTTGCCAGATATGCTTACCAAAGTTCTCACAGCTCATAGGTTTAAATACCTGTTAAATGAGTTGAATGTAAAGTCAAGACATATTGTTATAGGTAATTTTGGACTACCCGACGCGAGCCTAGAAATAGGATCGAAGGACGGACCCTGGAGAAGAAACGAGCCAAGGGGTCGAGCCAAGGCCAAAGAGATCAGGCTTTTGGTCCGACCCCATGGTCGGCCTCGGCCCGCTTGCGTGGGCCGAGTTCTTCCAACTCCGTTCAGTCCTTGTTGCCTCTGGCCGCCCCGGTTCTGCCTGGTTCGTCCTGCAACGCCTCCAAATTCCTAA

Coding sequence (CDS)

ATGTGGTTGAAGAGAATTGTGGGTGAGTTGTCGTCTCAAGAGTTTATTCCTGTCATCTGTTGTGATAGCCTGAGTGCTATTCGTCTTGCGAAGAATCCATCTCACCATGAACGGTCTAAACATAATGATGTTAAGTTGTTTCACTTTATAAGGGATATGATTTCTTATAATGAAGTTAAACTGGTGAAAGTTCATACAAATCAAAACTTGCCAGATATGCTTACCAAAGTTCTCACAGCTCATAGGTTTAAATACCTGTTAAATGAGTTGAATGTAAAGTCAAGACATATTGTTATAGGTAATTTTGGACTACCCGACGCGAGCCTAGAAATAGGATCGAAGGACGGACCCTGGAGAAGAAACGAGCCAAGGGGTCGAGCCAAGGCCAAAGAGATCAGGCTTTTGGTCCGACCCCATGGTCGGCCTCGGCCCGCTTGCGTGGGCCGAGTTCTTCCAACTCCGTTCAGTCCTTGTTGCCTCTGGCCGCCCCGGTTCTGCCTGGTTCGTCCTGCAACGCCTCCAAATTCCTAA

Protein sequence

MWLKRIVGELSSQEFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVKLVKVHTNQNLPDMLTKVLTAHRFKYLLNELNVKSRHIVIGNFGLPDASLEIGSKDGPWRRNEPRGRAKAKEIRLLVRPHGRPRPACVGRVLPTPFSPCCLWPPRFCLVRPATPPNS

Homology

[Close]

BLAST of Lag0040702 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 9.1e-31
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1    MWLKRIVGELSSQEFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVK 60
            +WLKRIVGEL SQEFIP+I CDS SAI LAKNPSHHERSKH DVK FH+IR++I+  +V+
Sbjct: 1081 VWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVK-FHYIRNVIAQKDVE 1140

Query: 61   LVKVHTNQNLPDMLTKVLTAHRFKYLLNELNVKS 95
            LVKVHT +NL DMLTK L+AHRFKYLL+ELNVKS
Sbjct: 1141 LVKVHTVENLSDMLTKALSAHRFKYLLDELNVKS 1173

[Close]

BLAST of Lag0040702 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 9.1e-31
Identity = 72/94 (76.60%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1    MWLKRIVGELSSQEFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVK 60
            +WLKRIVGEL SQEFIP+I CDS SAI LAKNPSHHERSKH DVK FH+IR++I+  +V+
Sbjct: 1251 VWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVK-FHYIRNVIAQKDVE 1310

Query: 61   LVKVHTNQNLPDMLTKVLTAHRFKYLLNELNVKS 95
            LVKVHT +NL DMLTK L+AHRFKYLL+ELNVKS
Sbjct: 1311 LVKVHTVENLSDMLTKALSAHRFKYLLDELNVKS 1343

[Close]

BLAST of Lag0040702 vs. NCBI nr
Match: TYK10339.1 (hypothetical protein E5676_scaffold367G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-28
Identity = 66/94 (70.21%), Postives = 82/94 (87.23%), Query Frame = 0


Query: 1   MWLKRIVGELSSQEFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVK 60
           +WLKRIVGEL SQ+FIP+I C+S SAI LAKNPSHHERSKH D+K F++IR++I+  +V+
Sbjct: 590 VWLKRIVGELLSQKFIPIIHCESQSAIHLAKNPSHHERSKHIDIK-FYYIRNIIAQKDVE 649

Query: 61  LVKVHTNQNLPDMLTKVLTAHRFKYLLNELNVKS 95
           +VKVH  +NL DMLTK L+AHRFKYLL+ELNVKS
Sbjct: 650 MVKVHKVENLSDMLTKALSAHRFKYLLDELNVKS 682

[Close]

BLAST of Lag0040702 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-24
Identity = 72/130 (55.38%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 1    MWLKRIVGELSSQEFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVK 60
            +WLKRIVGEL SQEFIP+I CDS SAI LAKNPSHHERSKH DVK FH+IR++I+  +V+
Sbjct: 1203 VWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVK-FHYIRNVIAQKDVE 1262

Query: 61   LVKVHTNQNLPDMLTKVLTAHR-FKYLLNELNVKSRHIVIGNFGLPDASLEIGSKDGPWR 120
            LVKVHT +NL DMLTK L+AHR  +    E + K R   +  FG      E G ++    
Sbjct: 1263 LVKVHTVENLSDMLTKALSAHRSTRKEQKEEDKKKRGAAV--FGNIQRERESGGEELRRE 1322

Query: 121  RNEPRGRAKA 130
            R    GR  A
Sbjct: 1323 RESDGGRTPA 1329

[Close]

BLAST of Lag0040702 vs. NCBI nr
Match: KAA0065713.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-24
Identity = 61/82 (74.39%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1   MWLKRIVGELSSQEFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVK 60
           +WLKRIVGEL SQEFIP+I CDS SAI LAKNPSHHERSKH DVK FH+IR++I+  +V+
Sbjct: 26  VWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVK-FHYIRNVIAQKDVE 85

Query: 61  LVKVHTNQNLPDMLTKVLTAHR 83
           LVKVHT +NL DMLTK L+AHR
Sbjct: 86  LVKVHTVENLSDMLTKALSAHR 106

[Close]

BLAST of Lag0040702 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.0e-14
Identity = 38/84 (45.24%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1    MWLKRIVGELSSQEFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVK 60
            +WLKR + EL   +   V+ CDS SAI L+KN  +H R+KH DV+ +H+IR+M+    +K
Sbjct: 1235 IWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVR-YHWIREMVDDESLK 1294

Query: 61   LVKVHTNQNLPDMLTKVLTAHRFK 85
            ++K+ TN+N  DMLTKV+  ++F+
Sbjct: 1295 VLKISTNENPADMLTKVVPRNKFE 1317

[Close]

BLAST of Lag0040702 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-07
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 0


Query: 1    MWLKRIVGELSSQEFIPV-ICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEV 60
            +WLK ++  ++ +   P+ I  D+   I +A NPS H+R+KH D+K +HF R+ +  N +
Sbjct: 1309 LWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIK-YHFAREQVQNNVI 1368

Query: 61   KLVKVHTNQNLPDMLTKVLTAHRFKYLLNELNV 93
             L  + T   L D+ TK L A RF  L ++L +
Sbjct: 1369 CLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Lag0040702 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.5e-07
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 2    WLKRIVGELSSQ-EFIPVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVK 61
            W+  ++ EL  Q    PVI CD++ A  L  NP  H R KH  +  +HFIR+ +    ++
Sbjct: 1353 WICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALD-YHFIRNQVQSGALR 1412

Query: 62   LVKVHTNQNLPDMLTKVLTAHRFKYLLNELNV 93
            +V V T+  L D LTK L+   F+    ++ V
Sbjct: 1413 VVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Lag0040702 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-06
Identity = 28/76 (36.84%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 17   PVICCDSLSAIRLAKNPSHHERSKHNDVKLFHFIRDMISYNEVKLVKVHTNQNLPDMLTK 76
            PVI CD++ A  L  NP  H R KH  +  +HFIR+ +    +++V V T+  L D LTK
Sbjct: 1386 PVIYCDNVGATYLCANPVFHSRMKHIAID-YHFIRNQVQSGALRVVHVSTHDQLADTLTK 1445

Query: 77   VLTAHRFKYLLNELNV 93
             L+   F+   +++ V
Sbjct: 1446 PLSRTAFQNFASKIGV 1460

The following BLAST results are available for this feature:

BLAST of Lag0040702 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13826.1	9.1e-31	76.60	putative polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	9.1e-31	76.60	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK10339.1	4.2e-28	70.21	hypothetical protein E5676_scaffold367G00140 [Cucumis melo var. makuwa]	[more]
TYK25306.1	1.7e-24	55.38	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0065713.1	2.2e-24	74.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Lag0040702 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.0e-14	45.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.9e-07	35.48	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	9.5e-07	34.78	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.8e-06	36.84	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1..80 e-value: 5.19219E-31 score: 107.554

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040702.1	Lag0040702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding