Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCACGTTTGTTTAGATTATCTTTGCGTCCAAATGCCTCAGTCGTAGAGGTCTTGAATAGTTCTCAGGCGGCTTGGGATTTGAGTCTTCAATGGAATCTTACTGAGTTGGAGATGCTTGAATGGTCTAATCTTTCCAATCTTCTTTCACCTATTGCATTAAGGTTGGTAGATGACTCATTGTTAGGCCTATTGATCACTCTAACATTTTTACTGTCAAATCCCTAATGGATGATTTGGTTCAATCTGTTAATTATAGCTCGAACAACCTTTATTCAGTAATTTGGAAGGATACTTACTCTAAGAAAATTAAAATCTTCTTGTGGGAGCTTAGCCTTGGTGGACTTTATACTGCTGATAGACTACAGAGGAGGATGCCACATTTCTAACCTTTCTCCTTGTTATGCGATGTGTTTACATTGTTCTTTTGTTGTTCAATATTGGGTCACAGTGCTTGATGCCCTTGGTTGGACTATGGTTTGGCCGAACAATATCTTCAGTATTCTCGAATCAATTTTAGTGGGTCATCCCTTCCATGGTGTAAAAAAGACGGCTTGCTCTTAATTGAGTTTTCTTTTGATATCTTTGGTGTGAGAGGAATGGATGAATTTTTAGGGACGTTTTCTCACCCTTTGATAGTTTTTGGGATTTAATTCTGTTCTATGCTTTGTATTGGTGTAAACATAAATACCCTTTTAAAGATTATGGTTTTTCTTCTTTGATTAAGCTTCCTTTATTTCATTTATCAATGAAATTGTTTCCCATCTCAAAAAAAAAAAAAAAAAAAAAAAACACAAAAGACTTTATTATGAGGAATTTTTTCCTAATTATCAAAAAGCAAAATAAAAATTCAAGAGGTCCAATCGGAAGAAGAGAATTAGAATGACTTTCTACCAAAACAAATGGTGGTTTATGCCATAAACCACCATTTGTTAGTCTATATTTCCAACCATTAATTCCAAAAAAGATTTCAAGATTAAATATTTTCGAAGTGCCACTCTTCTTGCTATTGTTTTTGCCATAAACATCTTCAAGCAGAAAAGGAAGAAGCACGGTAAGGCTTAGGATCATAGTTATATCGACTCACAATGAATTTGGAGATTTTTGCATGATCAAGACAGCCTATGGAGAAAAATTATTTCTGCTAAGTTTTACAATGCTGCTGGATTTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCATCAAAATCCCTTTGGAAATCTATTTGTAATACAATTGATGTTGTGGGTAGTCGAATTAAAAAACGGCTTGGCAATGGTATGCATACATCTTTTTGGAATGATATATGGCTTGACAGTGTTCCTCTTAAAATATCATATCCTCATCTTCATCGGTTAGCTACCCGACCTATGGATTCAATTGCTGAAGTTTGGAACTCCGCATCTAAAGCGTGGGATTTGGGCCTCCGTCGAAATCTAAATGAGGAGGAGATTATGGAATGGGCCAATCTTTCTCATCTCCTTTCTACAGTCATCCTAAGAAATGTCCAAGATTCTTGGTCATGGCCTCTTGATTCTTCTAATACTTTTACAGTCAAATCTTTGATGGAAGAGTTAGTTCATTCAAATGGATCATCTCGAAACAATCTGTTTTCGATAATTTGGAAGGATCAATACCCAAAGAAGATCAAAATTTTCTTATGGGAGCTTAGTCATGGTGGAATCAACCCAGCTGATAGACTTCAAAGAAGAATGCCTAATTATTTTCTCTCCCCTTCCTGGTGTGTTGTGTGTTGTTTAAATGAGGAAAGCCAAATTGACTATTATGTTGGGAACTTTTGA
mRNA sequence
ATGTTTTCACGTTTGTTTAGATTATCTTTGCGTCCAAATGCCTCAGTCGTAGAGGTCTTGAATAGTTCTCAGGCGGCTTGGGATTTGAGTCTTCAATGGAATCTTACTGAGTTGGAGATGCTTGAATGGTCTAATCTTTCCAATCTTCTTTCACCTATTGCATTAAGCCTATGGAGAAAAATTATTTCTGCTAAGTTTTACAATGCTGCTGGATTTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCATCAAAATCCCTTTGGAAATCTATTTGTAATACAATTGATGTTGTGGGTAGTCGAATTAAAAAACGGCTTGGCAATGGTATGCATACATCTTTTTGGAATGATATATGGCTTGACAGTGTTCCTCTTAAAATATCATATCCTCATCTTCATCGGTTAGCTACCCGACCTATGGATTCAATTGCTGAAGTTTGGAACTCCGCATCTAAAGCGTGGGATTTGGGCCTCCGTCGAAATCTAAATGAGGAGGAGATTATGGAATGGGCCAATCTTTCTCATCTCCTTTCTACAGTCATCCTAAGAAATGTCCAAGATTCTTGGTCATGGCCTCTTGATTCTTCTAATACTTTTACAGTCAAATCTTTGATGGAAGAGTTAGTTCATTCAAATGGATCATCTCGAAACAATCTGTTTTCGATAATTTGGAAGGATCAATACCCAAAGAAGATCAAAATTTTCTTATGGGAGCTTAGTCATGGTGGAATCAACCCAGCTGATAGACTTCAAAGAAGAATGCCTAATTATTTTCTCTCCCCTTCCTGGTGTGTTGTGTGTTGTTTAAATGAGGAAAGCCAAATTGACTATTATGTTGGGAACTTTTGA
Coding sequence (CDS)
ATGTTTTCACGTTTGTTTAGATTATCTTTGCGTCCAAATGCCTCAGTCGTAGAGGTCTTGAATAGTTCTCAGGCGGCTTGGGATTTGAGTCTTCAATGGAATCTTACTGAGTTGGAGATGCTTGAATGGTCTAATCTTTCCAATCTTCTTTCACCTATTGCATTAAGCCTATGGAGAAAAATTATTTCTGCTAAGTTTTACAATGCTGCTGGATTTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCATCAAAATCCCTTTGGAAATCTATTTGTAATACAATTGATGTTGTGGGTAGTCGAATTAAAAAACGGCTTGGCAATGGTATGCATACATCTTTTTGGAATGATATATGGCTTGACAGTGTTCCTCTTAAAATATCATATCCTCATCTTCATCGGTTAGCTACCCGACCTATGGATTCAATTGCTGAAGTTTGGAACTCCGCATCTAAAGCGTGGGATTTGGGCCTCCGTCGAAATCTAAATGAGGAGGAGATTATGGAATGGGCCAATCTTTCTCATCTCCTTTCTACAGTCATCCTAAGAAATGTCCAAGATTCTTGGTCATGGCCTCTTGATTCTTCTAATACTTTTACAGTCAAATCTTTGATGGAAGAGTTAGTTCATTCAAATGGATCATCTCGAAACAATCTGTTTTCGATAATTTGGAAGGATCAATACCCAAAGAAGATCAAAATTTTCTTATGGGAGCTTAGTCATGGTGGAATCAACCCAGCTGATAGACTTCAAAGAAGAATGCCTAATTATTTTCTCTCCCCTTCCTGGTGTGTTGTGTGTTGTTTAAATGAGGAAAGCCAAATTGACTATTATGTTGGGAACTTTTGA
Protein sequence
MFSRLFRLSLRPNASVVEVLNSSQAAWDLSLQWNLTELEMLEWSNLSNLLSPIALSLWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWNDIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHLLSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRNNLFSIIWKDQYPKKIKIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYVGNF
Homology
BLAST of Lag0040691 vs. NCBI nr
Match:
KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 159.8 bits (403), Expect = 3.3e-35
Identity = 81/227 (35.68%), Postives = 119/227 (52.42%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 210 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 269
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L L+T SI ++WN+ WDL RR L E E WA L +
Sbjct: 270 SHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNTLMDWDLNPRRQLREWEYPLWAELKNS 329
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
L+ N +DS +W L+S+ +TV S+ + L + S N F +WK PKK
Sbjct: 330 LNASFCENGKDSPTWTLNSNGLYTVASVKKALQQPDQSLLDLQSQNTFKNLWKTSIPKKC 389
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+PN PSWCV+C N+E +I ++
Sbjct: 390 IFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFI 435
BLAST of Lag0040691 vs. NCBI nr
Match:
TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 157.1 bits (396), Expect = 2.2e-34
Identity = 79/227 (34.80%), Postives = 118/227 (51.98%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 786 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 845
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L+ L+T SI ++WN+ WDL RR L E E+ WA L +
Sbjct: 846 GHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWELPLWAELKNS 905
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
++ N +DS W L+S+ +TV S+ + L S N F +WK PKK
Sbjct: 906 INASFCENGKDSPMWALNSNGLYTVASVKKALQQPEQSLLDLQSQNTFKNLWKTSIPKKC 965
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+P PSWCV+C N+E +I ++
Sbjct: 966 IFFIWTLLYDSVNTAEQLMKRLPKLCSRPSWCVMCKRNDEDRIHLFI 1011
BLAST of Lag0040691 vs. NCBI nr
Match:
XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])
HSP 1 Score: 157.1 bits (396), Expect = 2.2e-34
Identity = 80/227 (35.24%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 723 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 782
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L+ L+T SI ++WN+ WDL RR L E E WA L +
Sbjct: 783 SHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNS 842
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
L+ N DS W L+S+ +TV S+ + L + N F +WK PKK
Sbjct: 843 LNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKC 902
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+PN PSWCV+C N+E +I ++
Sbjct: 903 IFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFI 948
BLAST of Lag0040691 vs. NCBI nr
Match:
KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 157.1 bits (396), Expect = 2.2e-34
Identity = 80/227 (35.24%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 723 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 782
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L+ L+T SI ++WN+ WDL RR L E E WA L +
Sbjct: 783 SHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNS 842
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
L+ N DS W L+S+ +TV S+ + L + N F +WK PKK
Sbjct: 843 LNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKC 902
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+PN PSWCV+C N+E +I ++
Sbjct: 903 IFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFI 948
BLAST of Lag0040691 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 154.5 bits (389), Expect = 1.4e-33
Identity = 75/219 (34.25%), Postives = 120/219 (54.79%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+++I +K Y+ +P S+ S WK++ N I I ++ +G SFW
Sbjct: 609 LWKRLIISK-YDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 668
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
D W + PL ++ P L L+T S+ ++WN + K W++ + R L + E W N+
Sbjct: 669 DNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 728
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRN---NLFSIIWKDQYPKKIK 236
L T + W L+S+N F S+ ++L ++ S N +L+ +WK +PKK K
Sbjct: 729 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 788
Query: 237 IFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEE 273
F+W L HG IN ADRLQ+R+PN+ LSP+WC +C ++E
Sbjct: 789 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQE 826
BLAST of Lag0040691 vs. ExPASy TrEMBL
Match:
A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 1.6e-35
Identity = 81/227 (35.68%), Postives = 119/227 (52.42%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 210 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 269
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L L+T SI ++WN+ WDL RR L E E WA L +
Sbjct: 270 SHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNTLMDWDLNPRRQLREWEYPLWAELKNS 329
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
L+ N +DS +W L+S+ +TV S+ + L + S N F +WK PKK
Sbjct: 330 LNASFCENGKDSPTWTLNSNGLYTVASVKKALQQPDQSLLDLQSQNTFKNLWKTSIPKKC 389
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+PN PSWCV+C N+E +I ++
Sbjct: 390 IFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFI 435
BLAST of Lag0040691 vs. ExPASy TrEMBL
Match:
A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 80/227 (35.24%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 723 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 782
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L+ L+T SI ++WN+ WDL RR L E E WA L +
Sbjct: 783 SHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNS 842
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
L+ N DS W L+S+ +TV S+ + L + N F +WK PKK
Sbjct: 843 LNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKC 902
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+PN PSWCV+C N+E +I ++
Sbjct: 903 IFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFI 948
BLAST of Lag0040691 vs. ExPASy TrEMBL
Match:
A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 79/227 (34.80%), Postives = 118/227 (51.98%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 786 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 845
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L+ L+T SI ++WN+ WDL RR L E E+ WA L +
Sbjct: 846 GHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWELPLWAELKNS 905
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
++ N +DS W L+S+ +TV S+ + L S N F +WK PKK
Sbjct: 906 INASFCENGKDSPMWALNSNGLYTVASVKKALQQPEQSLLDLQSQNTFKNLWKTSIPKKC 965
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+P PSWCV+C N+E +I ++
Sbjct: 966 IFFIWTLLYDSVNTAEQLMKRLPKLCSRPSWCVMCKRNDEDRIHLFI 1011
BLAST of Lag0040691 vs. ExPASy TrEMBL
Match:
A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 1.0e-34
Identity = 80/227 (35.24%), Postives = 117/227 (51.54%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+KII+AK Y + P SS+S W SIC ++ + ++ NG SFW+
Sbjct: 723 LWKKIINAK-YRSLSKGDIPCVCNHSSSRSPWFSICKGLEWFQRHVSWKIKNGRSFSFWH 782
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
W + PL YP L+ L+T SI ++WN+ WDL RR L E E WA L +
Sbjct: 783 SHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNTLMDWDLNPRRQLREWEHPLWAELKNS 842
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGS----SRNNLFSIIWKDQYPKKI 236
L+ N DS W L+S+ +TV S+ + L + N F +WK PKK
Sbjct: 843 LNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQPEQNLLDFQSQNTFKNLWKTSIPKKC 902
Query: 237 KIFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEESQIDYYV 280
F+W L + +N A++L +R+PN PSWCV+C N+E +I ++
Sbjct: 903 IFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVMCKRNDEDRIHLFI 948
BLAST of Lag0040691 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 154.5 bits (389), Expect = 6.8e-34
Identity = 75/219 (34.25%), Postives = 120/219 (54.79%), Query Frame = 0
Query: 57 LWRKIISAKFYNAAGFCWWPKPIMGGSSKSLWKSICNTIDVVGSRIKKRLGNGMHTSFWN 116
LW+++I +K Y+ +P S+ S WK++ N I I ++ +G SFW
Sbjct: 609 LWKRLIISK-YDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWL 668
Query: 117 DIWLDSVPLKISYPHLHRLATRPMDSIAEVWNSASKAWDLGLRRNLNEEEIMEWANLSHL 176
D W + PL ++ P L L+T S+ ++WN + K W++ + R L + E W N+
Sbjct: 669 DNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKAS 728
Query: 177 LSTVILRNVQDSWSWPLDSSNTFTVKSLMEELVHSNGSSRN---NLFSIIWKDQYPKKIK 236
L T + W L+S+N F S+ ++L ++ S N +L+ +WK +PKK K
Sbjct: 729 LPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCK 788
Query: 237 IFLWELSHGGINPADRLQRRMPNYFLSPSWCVVCCLNEE 273
F+W L HG IN ADRLQ+R+PN+ LSP+WC +C ++E
Sbjct: 789 FFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQE 826
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0040037.1 | 3.3e-35 | 35.68 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| TYK06777.1 | 2.2e-34 | 34.80 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| XP_016902461.1 | 2.2e-34 | 35.24 | PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo] | [more] |
| KAA0039770.1 | 2.2e-34 | 35.24 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247... | [more] |
| KAA0044556.1 | 1.4e-33 | 34.25 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TES3 | 1.6e-35 | 35.68 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3DM72 | 1.0e-34 | 35.24 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3C4J1 | 1.0e-34 | 34.80 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A1S4E2K5 | 1.0e-34 | 35.24 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079... | [more] |
| A0A5A7TR15 | 6.8e-34 | 34.25 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
