Lag0040567 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040567
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	chr13: 6115770 .. 6116476 (-)
RNA-Seq Expression	Lag0040567
Synteny	Lag0040567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTCACAGTTCGAGCTCTGAAGGTTCCGCCGAACTCCGCGAGTCTAGAAGAGGCCCGGGCTCGAGTCTTCGACTTCTTCAGATCAGCATGTCGATCGTTGCCAACAATCATGGACATTTACAATCTAGATGATGTCGTTAAAATCTCTCAGCTCCGCTCTACCGTCGCCTCCGAGATCCGCAAGAATTCCCACATCACGGACCCTAAGGTCTCTCTTTCCTGTAATTTACGTTTTTTTTCTTTTCAATTTTCGTTTATTTTGATCGTTTCTATATGATTTTGGGGGCGTCTTACGGAATTTGTCTGAATCATTCGTTTAATGGTCTGGAGATTTTTTTTTTTTTTTTTTGGAACAAACCCTCTTTGTGTCGATTAGAGATATCAGAGAGAAATTTCAAAGTTGTCTTTTTCGTCTATTTTAAATTTTAAATGAATGCTATATAGAAAATCAAGGAAGGTGTTTAAGCCTTTTTCTAATCTATTAGAGGGTTTATCTTTCTCATTCTTCTAGTCATTGTAATCTCTCGTTCTGGAGGGTTTGTTTTTCAAGCGAGTTATTTCTGCTGTGTCTTATAGATATTGAGCCTTTTTGCCTGTAGATGCAGTGGTCGCCCACTGCTAGTCTTGTTTAATTGCGATCCCTCTGTATACATTAGAGTCGCATCAGACTTGTTGAAGTTTGATGAGATTGCTCTCCTATGA

mRNA sequence

ATGGCATTCACAGTTCGAGCTCTGAAGGTTCCGCCGAACTCCGCGAGTCTAGAAGAGGCCCGGGCTCGAGTCTTCGACTTCTTCAGATCAGCATGTCGATCGTTGCCAACAATCATGGACATTTACAATCTAGATGATGTCGTTAAAATCTCTCAGCTCCGCTCTACCGTCGCCTCCGAGATCCGCAAGAATTCCCACATCACGGACCCTAAGATATTGAGCCTTTTTGCCTGTAGATGCAGTGGTCGCCCACTGCTAGTCTTGTTTAATTGCGATCCCTCTGTATACATTAGAGTCGCATCAGACTTGTTGAAGTTTGATGAGATTGCTCTCCTATGA

Coding sequence (CDS)

ATGGCATTCACAGTTCGAGCTCTGAAGGTTCCGCCGAACTCCGCGAGTCTAGAAGAGGCCCGGGCTCGAGTCTTCGACTTCTTCAGATCAGCATGTCGATCGTTGCCAACAATCATGGACATTTACAATCTAGATGATGTCGTTAAAATCTCTCAGCTCCGCTCTACCGTCGCCTCCGAGATCCGCAAGAATTCCCACATCACGGACCCTAAGATATTGAGCCTTTTTGCCTGTAGATGCAGTGGTCGCCCACTGCTAGTCTTGTTTAATTGCGATCCCTCTGTATACATTAGAGTCGCATCAGACTTGTTGAAGTTTGATGAGATTGCTCTCCTATGA

Protein sequence

MAFTVRALKVPPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASEIRKNSHITDPKILSLFACRCSGRPLLVLFNCDPSVYIRVASDLLKFDEIALL

Homology

[Close]

BLAST of Lag0040567 vs. NCBI nr
Match: XP_038892169.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAFTVRALKVPPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASE 60
          MAFTVR LKVPPNSASLEEAR RVFDFFRSACRSLP IMDIYNLDDV  +SQLRST+ASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61 IRKNSHITDPKILSL 76
          IRKNSH+TDPK++ +
Sbjct: 61 IRKNSHVTDPKVIDM 75

[Close]

BLAST of Lag0040567 vs. NCBI nr
Match: XP_008446979.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 2.3e-27
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAFTVRALKVPPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASE 60
          MAFTVR LKVPPNSASLEEAR RVFDFFRSACRSLP IMDIYNLDDV  +SQLRST+ASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61 IRKNSHITDPKILSL 76
          IRKNSH+TDPK++ +
Sbjct: 61 IRKNSHVTDPKVIDM 75

[Close]

BLAST of Lag0040567 vs. NCBI nr
Match: XP_023552714.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-27
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAFTVRALKVPPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASE 60
          MAFTVR LKVPPNSASLEEAR RVFDFFRSACRSLP IMDIYNLDDV  ISQ+RST+ASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTISQIRSTIASE 60

Query: 61 IRKNSHITDPKILSL 76
          IRKNSH+TDPK++ +
Sbjct: 61 IRKNSHVTDPKVIDM 75

[Close]

BLAST of Lag0040567 vs. NCBI nr
Match: KAE8648872.1 (hypothetical protein Csa_008170 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.9e-27
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAFTVRALKVPPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASE 60
          MAFTVR LKVPPNSASLEEAR+RVFDFFRSACRSLP IMDIYNLDDV  +SQLRS +ASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHITDPKILSL 76
          IRKNSH+TDPK++ +
Sbjct: 61 IRKNSHVTDPKVIDM 75

[Close]

BLAST of Lag0040567 vs. NCBI nr
Match: XP_004142382.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.9e-27
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MAFTVRALKVPPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASE 60
          MAFTVR LKVPPNSASLEEAR+RVFDFFRSACRSLP IMDIYNLDDV  +SQLRS +ASE
Sbjct: 1  MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61 IRKNSHITDPKILSL 76
          IRKNSH+TDPK++ +
Sbjct: 61 IRKNSHVTDPKVIDM 75

[Close]

BLAST of Lag0040567 vs. ExPASy Swiss-Prot
Match: Q9LHI0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=At3g12260 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-22
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 3  FTVRALKVPPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASEIR 62
          F +R + VPPNSA+L EAR RVFDFFR+ACRS+PTIMDIYNL DVV  SQLR  ++++IR
Sbjct: 5  FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63 KNSHITDPKILSL 76
           N+HITDPK++ L
Sbjct: 65 NNAHITDPKVIDL 77

[Close]

BLAST of Lag0040567 vs. ExPASy Swiss-Prot
Match: Q02366 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=9913 GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 22/69 (31.88%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 11 PPNSASLEEARARVFDFFRSACRSLPTIMDIYNLDDVVKISQLRSTVASEIRKNSHITDP 70
          P  S  + EA+ RV + +R+  R +P  + ++ LD  + + Q R  V    +KN+HITDP
Sbjct: 19 PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71 KILSLFACR 80
          +++ L   +
Sbjct: 79 RVVDLLVIK 85

The following BLAST results are available for this feature:

BLAST of Lag0040567 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892169.1	2.3e-27	84.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]	[more]
XP_008446979.1	2.3e-27	84.00	PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis...	[more]
XP_023552714.1	3.0e-27	84.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo sub...	[more]
KAE8648872.1	3.9e-27	82.67	hypothetical protein Csa_008170 [Cucumis sativus]	[more]
XP_004142382.1	3.9e-27	82.67	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucumis sativus]	[more]

BLAST of Lag0040567 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHI0	1.7e-22	67.12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
Q02366	1.6e-04	31.88	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=99...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12964:SF4	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 6-LIKE	coord: 1..75
None	No IPR available	CDD	cd20266	Complex1_LYR_NDUFA6_LYRM6	coord: 17..75 e-value: 2.70912E-23 score: 83.3811
IPR016488	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040567.1	Lag0040567.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity