Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTCTCTCTGCTGAGGCTCAGTTTCATGTCTTGGCTGTTGATGACAGCCTCGTTGATCGGAAGCTGATCGAAAGACTCCTCAAAACCTCCTCCTTCAATGGTAATCTGCTACTCATCCCTCTCTATTCTCTCTGTTTTTCTTGCCTCTGCTCTTCAGAATATGAATTCTTCATCAAATCTATTGTGATTTGAGCTTTACTTGTTAGGTTTTGAGTAAGGGAAAGTTTGAGAATAGATGATTAAATGGCTTATCTACATGAGCTCTTGGTTGGGTTGAGTGGTAATTTAGTATGATGTGAATGTGAATGTGATTTTCTCCTCAATTACTGTTGATGATAGTCACTTGTTAGGTCTTGCGTCGATTTTCGAGTATAAATGATTAAATAGTTTATCCGCATTGGGTTGAGTGGTGATTTAACATGATACCGGATGAACTCTTGGAATGTGGTTTTCTGTCGGATTACTATTGATAGTCACTTGTTGGGTCTTGTGCTGTTTCTCGAGTCCGGGAGGGAACTTCGAGAATAAATGATTAATTAGTCTTTCAGTTGGGTTGAGTGGTGATTTAACAAGTGGGTGGGGTTTGATTTTTGTTCAGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCACCCATTCTCCTCTTTCCCCTGAAAATCATCATCATCATCATCAGGTAAGTTAACAGTTGCCAAGTTGAGTTTTGATTTGGTCTTGTTTTTATTTTCTTTTTGGGCTTTGTTTGATTTGTTTTCTTTTATCATTGATGCAGGAAATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGCAAGTTTCTTCTTCTTTTTAAGATAATATTCACTTTTCAACTCATTCCAAACAGAAATTTTGAATGGAAAATCTCATCTGGTTTTGCAGGGATCTGACTCACTTAAAGACATTCCTGTGGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGGTTAGGGGAAACTGCTAGAATAAGAACCATTTTTAAAAAAAAAAAACAAAAACAAAATCGAAATCCGAAACGATAAACAAGAAGATTCATGTGTAATCTGAACTGGGTTTTGGTTTTTGTTTTGAATCAGATGTTTGGAAGAAGGAGCTGAGGAGTTTCTGCTAAAACCAGTGAAGTTATCTGATGTCAACAAGCTTAAGCCTTTCATTTGTAGAGGAAAAGCCAAGGAAATGGAATCCAACAATCTCAAGAGAAAGGAAATGGGATCTGCCCAATCATCTGAGAGAACAAGAACAAAATACAATGATCATTCCTCCTAA
mRNA sequence
ATGGCTCTTCTCTCTGCTGAGGCTCAGTTTCATGTCTTGGCTGTTGATGACAGCCTCGTTGATCGGAAGCTGATCGAAAGACTCCTCAAAACCTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCACCCATTCTCCTCTTTCCCCTGAAAATCATCATCATCATCATCAGGAAATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGGATCTGACTCACTTAAAGACATTCCTGTGGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTCTGCTAAAACCAGTGAAGTTATCTGATGTCAACAAGCTTAAGCCTTTCATTTGTAGAGGAAAAGCCAAGGAAATGGAATCCAACAATCTCAAGAGAAAGGAAATGGGATCTGCCCAATCATCTGAGAGAACAAGAACAAAATACAATGATCATTCCTCCTAA
Coding sequence (CDS)
ATGGCTCTTCTCTCTGCTGAGGCTCAGTTTCATGTCTTGGCTGTTGATGACAGCCTCGTTGATCGGAAGCTGATCGAAAGACTCCTCAAAACCTCCTCCTTCAATGTTACTGCTGTGGATTCTGGAAGCAAAGCTTTGGAGCTTCTGGGTTTGGTTAGAGAGAGAAATGGAAGCACCCATTCTCCTCTTTCCCCTGAAAATCATCATCATCATCATCAGGAAATTGAAGTTAATCTCATCATTACAGATTACTGTATGCCAGAAATGACAGGCTATGATCTTCTAAGAAAGATCAAGGGATCTGACTCACTTAAAGACATTCCTGTGGTGATTATGTCCTCTGAGAATGTTCCATCAAGAATCAACAGATGTTTGGAAGAAGGAGCTGAGGAGTTTCTGCTAAAACCAGTGAAGTTATCTGATGTCAACAAGCTTAAGCCTTTCATTTGTAGAGGAAAAGCCAAGGAAATGGAATCCAACAATCTCAAGAGAAAGGAAATGGGATCTGCCCAATCATCTGAGAGAACAAGAACAAAATACAATGATCATTCCTCCTAA
Protein sequence
MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPLSPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMESNNLKRKEMGSAQSSERTRTKYNDHSS
Homology
BLAST of Lag0040546 vs. NCBI nr
Match:
XP_022956694.1 (LOW QUALITY PROTEIN: two-component response regulator ORR11-like [Cucurbita moschata])
HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 167/182 (91.76%), Postives = 173/182 (95.05%), Query Frame = 0
Query: 1 MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTH 60
MAL+S+ AQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGS H
Sbjct: 52 MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 111
Query: 61 SPLSPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSR 120
SP SPENHHH HQEIEVNLIITDYCMPEMTGYDLLRKIK SDSLKDIPVVIMSSENVP+R
Sbjct: 112 SPYSPENHHHQHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPAR 171
Query: 121 INRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMESNNLKRKEMGSAQSSERTRTKY 180
INRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEM+ NNLKRKEM +QSSERTR KY
Sbjct: 172 INRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDCNNLKRKEMEQSQSSERTRAKY 231
Query: 181 ND 183
N+
Sbjct: 232 NE 233
BLAST of Lag0040546 vs. NCBI nr
Match:
XP_038892701.1 (two-component response regulator ORR4-like [Benincasa hispida])
HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85
Identity = 169/186 (90.86%), Postives = 175/186 (94.09%), Query Frame = 0
Query: 1 MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTH 60
MALLSAE +FHVLAVDDSL+DRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGS H
Sbjct: 1 MALLSAEPRFHVLAVDDSLIDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSNH 60
Query: 61 SPLSPEN----HHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSEN 120
SP+SPEN HHHHHQEIEVNLIITDYCMPEMTGYDLLRKIK SDSLKDIPVVIMSSEN
Sbjct: 61 SPISPENHHHYHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSEN 120
Query: 121 VPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMESNNLKRKEMGSAQSSERT 180
VPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGK KEM+ NNLKRKEM +QSSERT
Sbjct: 121 VPSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKDKEMDINNLKRKEMEKSQSSERT 180
Query: 181 RTKYND 183
RTKYN+
Sbjct: 181 RTKYNE 186
BLAST of Lag0040546 vs. NCBI nr
Match:
XP_023526911.1 (two-component response regulator ORR4-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 167/183 (91.26%), Postives = 173/183 (94.54%), Query Frame = 0
Query: 1 MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTH 60
MAL+S+ AQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGS H
Sbjct: 1 MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60
Query: 61 SPLSPENHHH-HHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPS 120
SP PENHHH HHQEIEVNLIITDYCMPEMTGYDLLRKIK SDSLKDIPVVIMSSENVP+
Sbjct: 61 SPFPPENHHHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPA 120
Query: 121 RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMESNNLKRKEMGSAQSSERTRTK 180
RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEM+ NNLKRKEM +QSSERTR K
Sbjct: 121 RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDCNNLKRKEMEQSQSSERTRAK 180
Query: 181 YND 183
YN+
Sbjct: 181 YNE 183
BLAST of Lag0040546 vs. NCBI nr
Match:
KAG6601130.1 (Two-component response regulator ORR9, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 320.9 bits (821), Expect = 7.4e-84
Identity = 166/183 (90.71%), Postives = 174/183 (95.08%), Query Frame = 0
Query: 1 MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTH 60
MAL+S+ AQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGS H
Sbjct: 1 MALVSSNAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSIH 60
Query: 61 SPLSPENHHH-HHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPS 120
SP SPENH+H HHQEIEVNLIITDYCMPEMTGYDLLRKIK SDSLKDIPVVIMSSENVP+
Sbjct: 61 SPFSPENHNHQHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENVPA 120
Query: 121 RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMESNNLKRKEMGSAQSSERTRTK 180
RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEM+ N+LKRKEM +QSSERTR K
Sbjct: 121 RINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKEMDCNSLKRKEMEQSQSSERTRAK 180
Query: 181 YND 183
YN+
Sbjct: 181 YNE 183
BLAST of Lag0040546 vs. NCBI nr
Match:
XP_008446956.1 (PREDICTED: two-component response regulator ORR9-like [Cucumis melo] >KAA0034757.1 two-component response regulator ORR9-like [Cucumis melo var. makuwa])
HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 153/171 (89.47%), Postives = 162/171 (94.74%), Query Frame = 0
Query: 1 MALLSA-EAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGST 60
M+LLS+ + +FHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNG+
Sbjct: 1 MSLLSSDQPRFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGTN 60
Query: 61 H-SPLSPENH-HHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENV 120
H SP+SPENH HHHQEIEVNLIITDYCMPEMTGYDLLRKIK SDSLKDIPVVIMSSENV
Sbjct: 61 HNSPISPENHRQHHHQEIEVNLIITDYCMPEMTGYDLLRKIKESDSLKDIPVVIMSSENV 120
Query: 121 PSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG-KAKEMESNNLKRKEM 168
PSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRG KAKE++ N+LKRKEM
Sbjct: 121 PSRINRCLEEGAEEFLLKPVKLSDVNKLKPFICRGTKAKEIDFNHLKRKEM 171
BLAST of Lag0040546 vs. ExPASy Swiss-Prot
Match:
Q4GZK7 (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=RR4 PE=2 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 5.4e-53
Identity = 108/153 (70.59%), Postives = 126/153 (82.35%), Query Frame = 0
Query: 1 MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTH 60
M ++ AE++FHVLAVDDSL+DRKLIE LLK SS+ VT VDSGSKALELLGL E + S+
Sbjct: 1 MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSS 60
Query: 61 SPLSPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSR 120
SP S HQEI+VNLIITDYCMP MTGYDLL+++KGS SLKDIPVVIMSSENVP+R
Sbjct: 61 SPSSSS---PDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPAR 120
Query: 121 INRCLEEGAEEFLLKPVKLSDVNKLKPFICRGK 154
INRCLE+GAEEF LKPVKL+D+ KLK + + K
Sbjct: 121 INRCLEDGAEEFFLKPVKLADMKKLKSHLLKRK 150
BLAST of Lag0040546 vs. ExPASy Swiss-Prot
Match:
Q942A1 (Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica OX=39947 GN=RR4 PE=2 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 5.4e-53
Identity = 108/153 (70.59%), Postives = 126/153 (82.35%), Query Frame = 0
Query: 1 MALLSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTH 60
M ++ AE++FHVLAVDDSL+DRKLIE LLK SS+ VT VDSGSKALELLGL E + S+
Sbjct: 1 MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSS 60
Query: 61 SPLSPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSR 120
SP S HQEI+VNLIITDYCMP MTGYDLL+++KGS SLKDIPVVIMSSENVP+R
Sbjct: 61 SPSSSS---PDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPAR 120
Query: 121 INRCLEEGAEEFLLKPVKLSDVNKLKPFICRGK 154
INRCLE+GAEEF LKPVKL+D+ KLK + + K
Sbjct: 121 INRCLEDGAEEFFLKPVKLADMKKLKSHLLKRK 150
BLAST of Lag0040546 vs. ExPASy Swiss-Prot
Match:
Q4GZK2 (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=RR9 PE=2 SV=1)
HSP 1 Score: 199.9 bits (507), Expect = 2.5e-50
Identity = 111/187 (59.36%), Postives = 133/187 (71.12%), Query Frame = 0
Query: 4 LSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPL 63
++ EA FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL + SP+
Sbjct: 3 VAIEAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL----HDHEDSPI 62
Query: 64 SPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINR 123
S ++ QE+ VNLIITDYCMP MTGYDLL+KIK S L+DIPVVIMSS+N+PSRINR
Sbjct: 63 STQS---DQQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINR 122
Query: 124 CLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKE-------MESNNLKRKEMGSAQSSERT 183
CLEEGA+EF LKPV+LSD++KLKP I + + KE ++SN+ + +
Sbjct: 123 CLEEGADEFFLKPVRLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENSSS 182
BLAST of Lag0040546 vs. ExPASy Swiss-Prot
Match:
Q2RAP3 (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 GN=RR9 PE=2 SV=2)
HSP 1 Score: 199.9 bits (507), Expect = 2.5e-50
Identity = 111/187 (59.36%), Postives = 133/187 (71.12%), Query Frame = 0
Query: 4 LSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPL 63
++ EA FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL + SP+
Sbjct: 3 VAIEAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL----HDHEDSPI 62
Query: 64 SPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINR 123
S ++ QE+ VNLIITDYCMP MTGYDLL+KIK S L+DIPVVIMSS+N+PSRINR
Sbjct: 63 STQS---DQQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINR 122
Query: 124 CLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKE-------MESNNLKRKEMGSAQSSERT 183
CLEEGA+EF LKPV+LSD++KLKP I + + KE ++SN+ + +
Sbjct: 123 CLEEGADEFFLKPVRLSDMSKLKPHILKSRCKEHYQQEQNLQSNSESNNSSNPTSENSSS 182
BLAST of Lag0040546 vs. ExPASy Swiss-Prot
Match:
B8BLZ4 (Two-component response regulator ORR10 OS=Oryza sativa subsp. indica OX=39946 GN=RR10 PE=2 SV=1)
HSP 1 Score: 199.5 bits (506), Expect = 3.3e-50
Identity = 111/187 (59.36%), Postives = 133/187 (71.12%), Query Frame = 0
Query: 4 LSAEAQFHVLAVDDSLVDRKLIERLLKTSSFNVTAVDSGSKALELLGLVRERNGSTHSPL 63
++ EA FHVLAVDDSL DRKLIERLLKTSSF VT VDSGSKALE LGL + SP+
Sbjct: 3 VAIEAPFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL----HDHEDSPI 62
Query: 64 SPENHHHHHQEIEVNLIITDYCMPEMTGYDLLRKIKGSDSLKDIPVVIMSSENVPSRINR 123
S ++ QE+ VNLIITDYCMP MTGYDLL+KIK S L+DIPVVIMSS+N+PSRINR
Sbjct: 63 STQS---DQQEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINR 122
Query: 124 CLEEGAEEFLLKPVKLSDVNKLKPFICRGKAKE-------MESNNLKRKEMGSAQSSERT 183
CLEEGA+EF LKPV+LSD++KLKP I + + KE ++SN+ + +
Sbjct: 123 CLEEGADEFFLKPVRLSDMSKLKPHILKSRCKEHYQQEQHLQSNSESNNSSNPTSENSSS 182
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022956694.1 | 1.4e-85 | 91.76 | LOW QUALITY PROTEIN: two-component response regulator ORR11-like [Cucurbita mosc... | [more] |
XP_038892701.1 | 1.8e-85 | 90.86 | two-component response regulator ORR4-like [Benincasa hispida] | [more] |
XP_023526911.1 | 1.1e-84 | 91.26 | two-component response regulator ORR4-like [Cucurbita pepo subsp. pepo] | [more] |
KAG6601130.1 | 7.4e-84 | 90.71 | Two-component response regulator ORR9, partial [Cucurbita argyrosperma subsp. so... | [more] |
XP_008446956.1 | 2.0e-73 | 89.47 | PREDICTED: two-component response regulator ORR9-like [Cucumis melo] >KAA0034757... | [more] |
Match Name | E-value | Identity | Description | |
Q4GZK7 | 5.4e-53 | 70.59 | Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=... | [more] |
Q942A1 | 5.4e-53 | 70.59 | Two-component response regulator ORR4 OS=Oryza sativa subsp. japonica OX=39947 G... | [more] |
Q4GZK2 | 2.5e-50 | 59.36 | Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=... | [more] |
Q2RAP3 | 2.5e-50 | 59.36 | Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 G... | [more] |
B8BLZ4 | 3.3e-50 | 59.36 | Two-component response regulator ORR10 OS=Oryza sativa subsp. indica OX=39946 GN... | [more] |