Lag0040544 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040544
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cytochrome c oxidase assembly factor 5
Location	chr13: 5845460 .. 5849104 (-)
RNA-Seq Expression	Lag0040544
Synteny	Lag0040544

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAGTCTTGCAAAGGATTAGCAATGGAACTGGTCAAGTGTCTCAGTGAATCCGATTGTGTAAAGGTATCATATAATCATGTTCTCATCATTTATATCTGTGTCGTTATGTGTGTGCGTGTGCGTGTACAGACATGTATCCTATTGATTAGTACTCCGATAATTTGATTATAGAATTGACATCTATTTTTCTGAACTGCACCTTCTTATTTGTTGGCAATCATCTGCAACAGAATATACAGTCTTAACGAATGTGTTAGTTAGAACTTAGAACACCCTATTATGAAGAATGAAATAAGGATGCATAGAGTTGTTACGTTATTCAAAGCTTCTTCTTTTCTGTCTTTTGTTGTCGCAATTCAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCATGTATACCTAGTGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGCAAGTTTTCATTTACTCCTCCAGCCTCCTGCAGTCACTCACTTCTTGGTTGAAGTAGATTTTAATCTTGCTACATGGCGACTTGTTATTTGAACTTTTTGAGGTGTTATGATGTAAAATTGATCTTAAGATAGTAGACTGTGAATAGATGATTAATCACTTCTTTATGTTCAAGCATTGTTCCTTTTTGAGTTATCGGTGGGAAGTAGAGAGAACGTATGTTGATGGAGCTATCCCAAAGGGACATCCAAAGTAATATTATAGTAGAATGTTCAAATTTTTCTTGGAAAGAAATGCTAGGCTCTTGAGACATACTTATCCAAAAAAAAAAAAAGAAAGAAAAAAGAAAAGAAAAACGACAAGGAGAGAGATATTAGTGATCACTATTCATATCCTTATCTTCCTGTCAGAAAGGGCGAGGGCTAGTAAATAATGTATAATTATTCGGAATGAATTCATTAGTGTCTACTTTATTGCTGGCCACTCAACATAAATAATCAAACCTTCTTTGAAATTTTGGCCTTCCAAATGATCCTAAAAGGGGAGTGAGTATACACAATGGCGTAATGCATATGAAGTTTTTCCCCAAAATCCAATAGGATGAATCCTGTCCAGAAGTTTGGGTGCAAAGCAAGTGATTTACCTTTTATCTTATATCATGCAGTGCTAGCAAATCTACCATTCTACTTAATGTATTGTTCCCATGCCCAGGGGAAAATCTGGCAGCATTTTGGACAAGAAGATGAGAAACTTTCTTTAGATGGTTAGTCACAGGGAAGCTTATCCTCTTTGTAAATTAAAGGTGGTCTCTTGTCTATCAAAAATGGAGGTTTAGAGATTGGTAATTGGAGAAAAAGAAATTAAGCACTTGTGGAGAAATGTGTATGGAGATCTATGAATGAATCCAATCAGATTTGACACGGGGTAATGAGCAGCATTTATCGAAAATAAGGGGGAGTGACCTGCTTCTAAAAGAAAAGGCAGAAGTGCCCAGATCTCTATATAAAACAGAATAAAGTTGAAGGGGAATCATCATAAATAACTGCTATCAGATTAGGAGATGGGAAGATACTGGATGGGACTACATCCATTTGCTGTGAGCTTTACTATGGTTGAATGTAACCTGAAGTCAGTAAATGAAATTATGAAGTGGGAATTTGAGAAACTGGAATGTGCGTACTAGAAGGACTTTGACAAGCATTTGAATTTAGTAAGCTAAATAACATGCTGGATTTTCTGGAAAATGAGTGGATTGGAGCATGGATATATGAAATATTGTGGACTCTCACCTTTTGGGCTCAACATTTGTATTATAACCTAATGGATGCAATAGTGGTCTAGAAAGGAACTCTGTAAGGAACTGTAAACAGGAAAATATCCCAAAAATGTCAAGTTTTTGCCTGCACAGCTTGTTCTCGTGGACTCAAAACTTCTTAAAGATGAAGCCTTGATGTCCTTCCAATTATTTTGTACCCCTCAAAGTGTTCTCTATGTTTGGAAGAAAGTGAAGGAACGGACAATCCTTTCTTCCTTTGACCTTTAGTAGGTTTCATATCTACAGTTTTCTTCAGATCGGTCTTTGGAACAGAGTATATTTTGTCTAGTTTGTGGATATCGCTTAAGGGGCAAAGAAAAGAAACTTCAGGTAGAGTCTCTGATTGGAAAGAAAGAAACATAGAGTTAAGACTTGAGAGTGGATAAATTCTGAGTCGGCTAAATTTTTCTGTTCTTACTAGGTTCCTGTAGACAATGCCTCTAATTACTGCACTTTCAGTGTTTTTTTTTTTTTTTTTGAAGCACACTTTCAGTGTAATTCATACTTGGAGTGGTTTGCTTGTAAACTCCATTAGGGACTGACTGGGTTTTTCTTGTTTTATTTGTTATATCCTCACAAAAACTTTTACCATATTAATGAATAGCGGTTCCTGTTCCTAAAAGAAAAAAAAAAAGAAATTCGATGGCAGTCATGTTTAATTTGTTTTCCTGAAGTCGTGGATCTTGTTAAATGGTACTAAAATTGATGCTGTACATCTCGTAACACTCAATGCTCCTCAAAATTCCAGGTTGACATGAGGGCAAGGATTCGAGGAAACAAAGGTTATTGAACGGGGTGGACATGTGAAGAAGTTTGAAACTCTTGAGTGTCTGGAAGCTTGTCTGCAACGACCTGTAAAAATCTTACCCTTTCTGCATATATTCGGTAACATTCGGCTTTCAATTTTTCTTCCCTGAAGAGTTTTTCATTAATCTGCTTTATGAAGCCAGTAGCCAAATGTTTAATCCTGAGCTAATCTTCTTCCTTTTTGGTTGTGGTGGGGAGGGGGTTGAATGATGGTGTACTGTTTATGTTTTGGGATTTTCACATTGATTTTACCATGGCTGTTCAGGATTGAAGTTGTTTACATTTACATACATACTAGAAGGAAGGTATATTTCAGTGACTTGTATTCTTGCCATGTTTGATGCTTGTGTTGGTATCAAATTCATACGTGGCTTAACTGGCGTATGACTTCTTGAAGGGTTTTTTTTTTCCTTGATATATCAAACGGTTCCTCATAGGTAATTTTCAACTTGATATTTAATCTTTTGAAGTGATCGTTTTTATCTATAAAGTATTGAAAATTCTTCATAAAGAAAATAAAGAAAAAATTGTTGAGGTTTTTTTTTTTCTCTCTATCTCTCTTCATATTCGGTAGAGCTCATTCGTGGCTTCGGCAACTACCATCTTCTTGTTGTAACTTCACTCGCCACACAACTTCGTTTGGTGCCCCCTCCAAATCTTGAACGAGGAACAATGAACAAATTGAAACGAACAACATTCTAAATCTTGAGGAACAACCATTATTTGTTGTTTGTGTTCGTTTCTCCAAATAAAGGAATGAACAAGGTTCCACGAACAAAACCATTTGAGATGATACGAAGGGAAGTTCAACGATGATGCAACAACTATGACTGGTATCAGACGTTGACGAGAAAAGGAAGAAAAGGAAGAAAAGAGGGGAAAAGAGCAATGATGTAGTGGCGAATGAATGCACAACGGTGAATTCATCCATCTATGTTGAAGAAGAAGAGAGAAGAAAATGGAGAAAAGATACGAAAGGTAGGAAAGGGAGAAGAAGTACGGTGGAAGAAGTGAACAGAGACCAGAAGTCGTTTGAACTGAATAAACACTAA

mRNA sequence

ATGTCCAAGTCTTGCAAAGGATTAGCAATGGAACTGGTCAAGTGTCTCAGTGAATCCGATTGTGTAAAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCATGTATACCTAGTGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGTTGACATGAGGGCAAGGATTCGAGGAAACAAAGGATTGAAGTTGTTTACATTTACATACATACTAGAAGGAAGGTATATTTCAGTGACTTGTATTCTTGCCATGTTTGATGCTTGTGTTGACGTTGACGAGAAAAGGAAGAAAAGGAAGAAAAGAGGGGAAAAGAGCAATGATGTAGTGGCGAATGAATGCACAACGGTGAATTCATCCATCTATGTTGAAGAAGAAGAGAGAAGAAAATGGAGAAAAGATACGAAAGGTAGGAAAGGGAGAAGAAGTACGGTGGAAGAAGTGAACAGAGACCAGAAGTCGTTTGAACTGAATAAACACTAA

Coding sequence (CDS)

ATGTCCAAGTCTTGCAAAGGATTAGCAATGGAACTGGTCAAGTGTCTCAGTGAATCCGATTGTGTAAAGGTTCAGAACCGAACTTACAGGGAATGTGCTGGAGAGAAGAGTCCATGTATACCTAGTGAATGTGTGGGATTAAGGGAAACATATTTCAATTGTAAAAGAGGCCAGGTTGACATGAGGGCAAGGATTCGAGGAAACAAAGGATTGAAGTTGTTTACATTTACATACATACTAGAAGGAAGGTATATTTCAGTGACTTGTATTCTTGCCATGTTTGATGCTTGTGTTGACGTTGACGAGAAAAGGAAGAAAAGGAAGAAAAGAGGGGAAAAGAGCAATGATGTAGTGGCGAATGAATGCACAACGGTGAATTCATCCATCTATGTTGAAGAAGAAGAGAGAAGAAAATGGAGAAAAGATACGAAAGGTAGGAAAGGGAGAAGAAGTACGGTGGAAGAAGTGAACAGAGACCAGAAGTCGTTTGAACTGAATAAACACTAA

Protein sequence

MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRARIRGNKGLKLFTFTYILEGRYISVTCILAMFDACVDVDEKRKKRKKRGEKSNDVVANECTTVNSSIYVEEEERRKWRKDTKGRKGRRSTVEEVNRDQKSFELNKH

Homology

[Close]

BLAST of Lag0040544 vs. NCBI nr
Match: XP_008446948.1 (PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_022139307.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >XP_022139308.1 cytochrome c oxidase assembly factor 5 [Momordica charantia] >XP_031741572.1 cytochrome c oxidase assembly factor 5 [Cucumis sativus] >XP_031741573.1 cytochrome c oxidase assembly factor 5 [Cucumis sativus] >XP_038889422.1 cytochrome c oxidase assembly factor 5 [Benincasa hispida] >KGN52313.1 hypothetical protein Csa_009226 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 9.3e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60
          MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

Query: 61 MRARIRGNKG 71
          MRARIRGNKG
Sbjct: 61 MRARIRGNKG 70

[Close]

BLAST of Lag0040544 vs. NCBI nr
Match: XP_022956695.1 (cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cytochrome c oxidase assembly factor 5 [Cucurbita maxima] >XP_023534123.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo] >XP_023534138.1 cytochrome c oxidase assembly factor 5 [Cucurbita pepo subsp. pepo] >KAG6601133.1 Cytochrome c oxidase assembly factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 2.1e-32
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60
          MSKSCKGLAMELVKCLSESDCVKVQNRTY+ECAGEKSPCIPSECVGLRETYFNCKRGQVD
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYKECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

Query: 61 MRARIRGNKG 71
          MRARIRGNKG
Sbjct: 61 MRARIRGNKG 70

[Close]

BLAST of Lag0040544 vs. NCBI nr
Match: XP_031405462.1 (mitochondrial protein pet191 homolog [Punica granatum] >PKI63304.1 hypothetical protein CRG98_016295 [Punica granatum])

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-31
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60
          M+KSCKGLAMELVKCLSESDCVKVQ R+YRECAGEKSPCIPSECVGLRETYFNCKRGQVD
Sbjct: 1  MAKSCKGLAMELVKCLSESDCVKVQKRSYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60

Query: 61 MRARIRGNKG 71
          MRARIRGNKG
Sbjct: 61 MRARIRGNKG 70

[Close]

BLAST of Lag0040544 vs. NCBI nr
Match: XP_012090139.1 (mitochondrial protein pet191 homolog [Jatropha curcas])

HSP 1 Score: 144.8 bits (364), Expect = 6.6e-31
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60
          MSKSCKGLAMELVKCLSESDCVKV+ R+YRECAGEKSPCIPSECVGLRETYFNCKRGQ+D
Sbjct: 1  MSKSCKGLAMELVKCLSESDCVKVEKRSYRECAGEKSPCIPSECVGLRETYFNCKRGQLD 60

Query: 61 MRARIRGNKG 71
          MRARIRGNKG
Sbjct: 61 MRARIRGNKG 70

[Close]

BLAST of Lag0040544 vs. NCBI nr
Match: XP_021615629.1 (mitochondrial protein pet191 homolog [Manihot esculenta] >OAY48397.1 hypothetical protein MANES_06G155800v8 [Manihot esculenta])

HSP 1 Score: 144.4 bits (363), Expect = 8.7e-31
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60
          MSKSCKGLAMELVKCLSESDC+KV+ R+YRECAGEKSPCIPSECVGLRETYFNCKRGQ+D
Sbjct: 1  MSKSCKGLAMELVKCLSESDCIKVEKRSYRECAGEKSPCIPSECVGLRETYFNCKRGQLD 60

Query: 61 MRARIRGNKG 71
          MRARIRGNKG
Sbjct: 61 MRARIRGNKG 70

[Close]

BLAST of Lag0040544 vs. ExPASy Swiss-Prot
Match: O42921 (Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC16A3.16 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-07
Identity = 28/66 (42.42%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 1  MSKSCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVD 60
          M +SCK +  +L  CL  SDC+ V+ ++ REC   K   +P EC  L E Y  CKR  +D
Sbjct: 1  MGRSCKVIREDLANCLLHSDCMFVKKKSARECLKNKDE-LPEECKNLIEAYGECKRQMLD 60

Query: 61 MRARIR 67
          M  R R
Sbjct: 61 MTKRYR 65

[Close]

BLAST of Lag0040544 vs. ExPASy Swiss-Prot
Match: Q5RFJ0 (Cytochrome c oxidase assembly factor 5 OS=Pongo abelii OX=9601 GN=Coa5 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-07
Identity = 28/67 (41.79%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 4  SCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63
          +C GL  +L  CL ESDCV  + ++ R+C  E        C  L+  +F CKR  +D RA
Sbjct: 13 ACGGLKEDLGACLLESDCVVQEGKSPRQCLKE------GYCNSLKYAFFECKRSVLDNRA 72

Query: 64 RIRGNKG 71
          R RG KG
Sbjct: 73 RFRGRKG 73

[Close]

BLAST of Lag0040544 vs. ExPASy Swiss-Prot
Match: A1L3N6 (Cytochrome c oxidase assembly factor 5 OS=Xenopus laevis OX=8355 GN=coa5 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-07
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 5  CKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRAR 64
          C G+  +L  CL +SDCV  + ++ +EC  E        C  L+ T+F CKR  +D RAR
Sbjct: 15 CGGVKEDLKNCLLQSDCVLQEGKSPKECLKE------GYCKALQVTFFECKRSILDNRAR 74

Query: 65 IRGNKG 71
           RG KG
Sbjct: 75 FRGRKG 74

[Close]

BLAST of Lag0040544 vs. ExPASy Swiss-Prot
Match: Q3ZCK8 (Cytochrome c oxidase assembly factor 5 OS=Bos taurus OX=9913 GN=COA5 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 4  SCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63
          +C G+  +L  CL +SDCV  + ++ R+C  E        C  L+ ++F CKR  +D R+
Sbjct: 13 ACAGVKEDLGLCLLQSDCVLKEGKSPRQCLKE------GNCKALKYSFFECKRSMLDARS 72

Query: 64 RIRGNKG 71
          R RG KG
Sbjct: 73 RFRGRKG 73

[Close]

BLAST of Lag0040544 vs. ExPASy Swiss-Prot
Match: Q86WW8 (Cytochrome c oxidase assembly factor 5 OS=Homo sapiens OX=9606 GN=COA5 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 4  SCKGLAMELVKCLSESDCVKVQNRTYRECAGEKSPCIPSECVGLRETYFNCKRGQVDMRA 63
          +C GL  +L  CL +SDCV  + ++ R+C  E        C  L+  +F CKR  +D RA
Sbjct: 13 ACAGLKEDLGACLLQSDCVVQEGKSPRQCLKE------GYCNSLKYAFFECKRSVLDNRA 72

Query: 64 RIRGNKG 71
          R RG KG
Sbjct: 73 RFRGRKG 73

The following BLAST results are available for this feature:

BLAST of Lag0040544 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446948.1	9.3e-33	100.00	PREDICTED: cytochrome c oxidase assembly factor 5 [Cucumis melo] >XP_022139307.1...	[more]
XP_022956695.1	2.1e-32	98.57	cytochrome c oxidase assembly factor 5 [Cucurbita moschata] >XP_022975987.1 cyto...	[more]
XP_031405462.1	3.0e-31	95.71	mitochondrial protein pet191 homolog [Punica granatum] >PKI63304.1 hypothetical ...	[more]
XP_012090139.1	6.6e-31	94.29	mitochondrial protein pet191 homolog [Jatropha curcas]	[more]
XP_021615629.1	8.7e-31	92.86	mitochondrial protein pet191 homolog [Manihot esculenta] >OAY48397.1 hypothetica...	[more]

BLAST of Lag0040544 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42921	1.8e-07	42.42	Mitochondrial protein pet191 homolog OS=Schizosaccharomyces pombe (strain 972 / ...	[more]
Q5RFJ0	6.9e-07	41.79	Cytochrome c oxidase assembly factor 5 OS=Pongo abelii OX=9601 GN=Coa5 PE=3 SV=1	[more]
A1L3N6	9.1e-07	40.91	Cytochrome c oxidase assembly factor 5 OS=Xenopus laevis OX=8355 GN=coa5 PE=3 SV...	[more]
Q3ZCK8	1.2e-06	37.31	Cytochrome c oxidase assembly factor 5 OS=Bos taurus OX=9913 GN=COA5 PE=3 SV=1	[more]
Q86WW8	1.2e-06	40.30	Cytochrome c oxidase assembly factor 5 OS=Homo sapiens OX=9606 GN=COA5 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018793	Cytochrome c oxidase assembly protein PET191	PFAM	PF10203	Pet191_N	coord: 2..68 e-value: 2.1E-23 score: 82.4
IPR018793	Cytochrome c oxidase assembly protein PET191	PANTHER	PTHR28627	CYTOCHROME C OXIDASE ASSEMBLY FACTOR 5	coord: 1..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040544.1	Lag0040544.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0005739	mitochondrion