Lag0040541 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040541
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	F-box protein SKIP5
Location	chr13: 5816229 .. 5819236 (+)
RNA-Seq Expression	Lag0040541
Synteny	Lag0040541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCCGCATATTTCCATGGAGTTTCTGCCTTTTCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGTTGTGGCTGCGTGTAGAACGATCAATTAAAGATTTATCTGAGCCTGGAGTTTTCCCAACCATTGAGGCAGCTGTTGCTGCTGCTAGGTAAGTTTTTGCATGTTCATGTAATCATGTTTTTGTTTTCTATTTGAGGAAATAATAGGAGTTAGTTTTTAATAGAGCCTGAATGATTTTGAATGATTTTGTTCTTCATAGGCCTGGTGACACCATACTAATTGCAACAGGAGGAGTTCATTCTGCCTCTAATATTCAAATAACAAAACCACTTTGTCTGGTATGTTCTTTTTCCCTTCTTTTTGGCTGCTTGGCAGTGAAATTTTACTCTTTACATGTGATTTAAATGTCATCCAATTGGAAGGAATCTCTGCAGTAATCATGTACGGTTTGTGACTAATTTAGGTTCCCTTCGAGACAAAAAATGTCTTCTTATATTTTATGTGTGAGGAATTGTTTTTTAATAGCTAAGGAATGTGATCAATGTCTCTAAAAAGAAGGTTGCTATATAAAGCTAGAATTTATGTTCTGTTATTCTGTTTTTAAAAAATGTGCAGAATTTCATCTTTCTTTTGTTAAGAAACTAAGAAATTATAGGATCAAACAACCTCAACCCTAGCCATGAAATATTACTGGAGTCTTAAAAGAAGGTTGCTATGGACAAGCTAGTTATGCAGTATTAAAATGGACCTTCTTTATATGGCTTGGCCCTGCAATTGAAACTCAGATCAAGTACCTGTTTTGAGAGGCAGTATTTAGTTATTTCCCTGTACTTGCTTTTAAATATTGGTGGAACGTGAAATAGTGGCTTCTTGGTCCAGTTGTGCTCAGTTTTTGGACTGTATGAGCTTCTAACTTTAAGTTCCTGTTTGATAACTATTTTTTTTTTTGGTTTTCTATTTTTGAAAATTATGTTTGTTTCCTAACAATTTTTTGGTGAGATTTTCACCATGAAAACAAATTTGAATTCTAAGCCAAATTTAAAAAAAAAAAAATGTTTATTAAAACCACTTCTAGTTTTCAAAATTTGGCTTGGTTTCTTAAAAATGTTTTTAAAAAGTAGGTTATAAAGCAAGAGAAACGGTAGATGGAAGAAGTGTTTATAAGCTTGATTTTTAAAAATAGAAAATAAAAACCAAAATGGTTATCAAACAAGGGCCTAAACTCTTGGCATCTTGTATACTTCAATTTTCTTGCTTAATTTATGATAGCAATGGTTAGAACTCTCTCTCTCTCTCAATGTGAAACTGGTTTTCAGTGAAAGACTCATCTCATCAAACTGAAAGAACTTAAGTTTCACTATTTTCCATGTTTTATCTTAACTCAATATTGTTCAGATTGGTGGTGGTGAACTTCCTGAGGAGACTACACTTTTCTGTACTCGTGGTTCGGAAAGGTACATGGCGTATAATATAACTTTGCGATGGTTAATCCTATACATTTTCTCCCTCATAGCCTTTCTAAGAGATCAATTATCGTCATCCATCTCTACTTAAACTTGCTTTCGTTATTGGTGCCCTCTAATTGAATTCACCATTTACTTCTGGCGACTTCTCCTGACTAATATATTCTTTCATCATTGGCTGTATTGCATATTCATCCAGCAGTCTGGTTGGGAGAAGGGCTCGCAGAAACTTCTATTTTTTATTTGGTTTAAATCTCTTCTTATAACAAAACTTTCATATTTGTTCCCTATTGGTCGCCAACTTTCAAAATAGCCCCGAACTTTTAAAAATGACCATTTGGATCGTTGAACTTTGAAAATGTCTATTCTAACCTTTGCACTTTCAGAAAACAACCATTTTGGCCCTTTACTGTTATTTTGCTACCTTATACTCTCGTCTCATCTAACCTATAGGGGTCCAACCTATGTTAGCATATTAATATACTTATTTCGCCAACAAGAGCATAGCTCAATTGACATAAAGTATGTGCTTACTACTTATGACCAAGAGGTCATGAGTTCGAATCCCCCCACTCCCAAATTTTGTTGAACTCAAAATACACTCATTTCAAGTTATCGATCTCATCTATGAGTTTGATTTTCTTCCTGTTCTTTTTTTTTTCTGCCTGGTTCTAGGCTTTTCTTGGAACTCCTTTGCCTTCTTATGGTTTTCTTTTCTAGTTTTTCTTTTTCTTTTGGATTGTATTTGTTCTCTTCGTTTGGTCTAGTTTTTTCTTCCCCTGTAGAGGTTGTATTCCTTGAGCGATAGTCTCTTTTCATTTATTCAATAAAAAGTTTTGTTTTTGGTTCTAAACAATACACACTAGAAACCATATTATCCATATGTTAAATATATATATATATATATAGATAGATAGATAGATAGTTGTTGTCTTAAAATTCGAGGGCTAAAGTAGATATTTTAAATGTTAAAGGAGTCCATGATTAAAATGGGATGAGCTTCAAAGGTCAAGGACCAAAATGGACATTTTAGGGATCTTGAAAGAATCGAAGGATGATTTAAACCTTTCTATTTTATGATGTTTAGGGTCAACTGATTGAGTATGTACTTTCTGTTTCTTCTTAACAGTGCTTTGGAGTTCCTCTCTACCAGTAAACTCTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTAATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCCGATAAGTTATTACCTTCTCCGGTAAAGGGTGGTTATACAGATGGCGTTTCTGTTTCGCAAACCCGCATTGAGGGTGGCGCCAAAGCTGTCCTAACAAGTGAGGACCTGGCATTACAACACGTTCGAGTTATTTATACTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTATAA

mRNA sequence

ATGTCGCCCGCATATTTCCATGGAGTTTCTGCCTTTTCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGTTGTGGCTGCGTGTAGAACGATCAATTAAAGATTTATCTGAGCCTGGAGTTTTCCCAACCATTGAGGCAGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTAATTGCAACAGGAGGAGTTCATTCTGCCTCTAATATTCAAATAACAAAACCACTTTGTCTGATTGGTGGTGGTGAACTTCCTGAGGAGACTACACTTTTCTGTACTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTCTCTACCAGTAAACTCTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTAATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCCGATAAGTTATTACCTTCTCCGGTAAAGGGTGGTTATACAGATGGCGTTTCTGTTTCGCAAACCCGCATTGAGGGTGGCGCCAAAGCTGTCCTAACAAGTGAGGACCTGGCATTACAACACGTTCGAGTTATTTATACTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTATAA

Coding sequence (CDS)

ATGTCGCCCGCATATTTCCATGGAGTTTCTGCCTTTTCTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATAACACCGCCCTCGTTTGCCACAGATGGCGTTACTTGGCATGTCATCCTAGGTTGTGGCTGCGTGTAGAACGATCAATTAAAGATTTATCTGAGCCTGGAGTTTTCCCAACCATTGAGGCAGCTGTTGCTGCTGCTAGGCCTGGTGACACCATACTAATTGCAACAGGAGGAGTTCATTCTGCCTCTAATATTCAAATAACAAAACCACTTTGTCTGATTGGTGGTGGTGAACTTCCTGAGGAGACTACACTTTTCTGTACTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTCTCTACCAGTAAACTCTCTAACTTAACAGTCAAGGCAGAACTTGGTTGCTGCTTGCTTCACAGGAAGGGAAGATTAATTATAGATGGATGTGTCCTCCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACAGCAAGTCCCGATAAGTTATTACCTTCTCCGGTAAAGGGTGGTTATACAGATGGCGTTTCTGTTTCGCAAACCCGCATTGAGGGTGGCGCCAAAGCTGTCCTAACAAGTGAGGACCTGGCATTACAACACGTTCGAGTTATTTATACTCGAACGGCTCTGTTCTTTTGGTTTGATGTCGAATACAAGTTATAA

Protein sequence

MSPAYFHGVSAFSVTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL

Homology

[Close]

BLAST of Lag0040541 vs. NCBI nr
Match: XP_011655907.1 (F-box protein SKIP5 isoform X2 [Cucumis sativus])

HSP 1 Score: 452.6 bits (1163), Expect = 2.1e-123
Identity = 223/233 (95.71%), Postives = 224/233 (96.14%), Query Frame = 0


Query: 1   MSPAYFHGVSAFSVTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFP 60
           M P YF GVSAF VTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFP
Sbjct: 1   MPPVYFRGVSAFPVTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFP 60

Query: 61  TIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEF 120
           TIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEF
Sbjct: 61  TIEAAVAAARPGDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEF 120

Query: 121 LSTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSP 180
           LSTSKLSNLTVKAELGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPS 
Sbjct: 121 LSTSKLSNLTVKAELGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSS 180

Query: 181 VKGGYTDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           VKGGYT GVSVS TRIEGGAKAVLTSEDL LQHVRVIY RTALFFWFDVEYKL
Sbjct: 181 VKGGYTHGVSVSHTRIEGGAKAVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 233

[Close]

BLAST of Lag0040541 vs. NCBI nr
Match: XP_004142419.1 (F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protein Csa_008966 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 6.6e-114
Identity = 207/219 (94.52%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74
           +F     DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT
Sbjct: 54  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 113

Query: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134
           ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE
Sbjct: 114 ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 173

Query: 135 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQT 194
           LGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPS VKGGYT GVSVS T
Sbjct: 174 LGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHT 233

Query: 195 RIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           RIEGGAKAVLTSEDL LQHVRVIY RTALFFWFDVEYKL
Sbjct: 234 RIEGGAKAVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 272

[Close]

BLAST of Lag0040541 vs. NCBI nr
Match: XP_022139176.1 (F-box protein SKIP5 [Momordica charantia])

HSP 1 Score: 417.9 bits (1073), Expect = 5.6e-113
Identity = 206/219 (94.06%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74
           +F     DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDT
Sbjct: 45  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDT 104

Query: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134
           ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAE
Sbjct: 105 ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAE 164

Query: 135 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQT 194
           LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVC+A+PDKLLPS VKGGYTDGVSVSQT
Sbjct: 165 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQT 224

Query: 195 RIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           RIEGGAKAVLTSEDLALQHVRVIY RTALFFWFDVEY L
Sbjct: 225 RIEGGAKAVLTSEDLALQHVRVIYARTALFFWFDVEYNL 263

[Close]

BLAST of Lag0040541 vs. NCBI nr
Match: XP_008446937.1 (PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 [Cucumis melo var. makuwa] >TYK09305.1 F-box protein SKIP5 [Cucumis melo var. makuwa])

HSP 1 Score: 417.5 bits (1072), Expect = 7.3e-113
Identity = 205/219 (93.61%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74
           +F     DRYNTALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDT
Sbjct: 54  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDT 113

Query: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134
           ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE
Sbjct: 114 ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 173

Query: 135 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQT 194
           LGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPS VKGGYT GVSVS T
Sbjct: 174 LGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHT 233

Query: 195 RIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           RIEGGAKAVLTSEDL LQHVRVIY RTAL FWFDVEYKL
Sbjct: 234 RIEGGAKAVLTSEDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of Lag0040541 vs. NCBI nr
Match: XP_022945754.1 (F-box protein SKIP5-like [Cucurbita moschata])

HSP 1 Score: 416.0 bits (1068), Expect = 2.1e-112
Identity = 205/222 (92.34%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 12  FSVTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARP 71
           F+    I FADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSE GVFPT+EAAVAAARP
Sbjct: 154 FTFLSPIPFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARP 213

Query: 72  GDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTV 131
           GDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFC+RGSESALEFL TSKLSNLTV
Sbjct: 214 GDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTV 273

Query: 132 KAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSV 191
           KAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPD L  S VKGGYTDGVSV
Sbjct: 274 KAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSV 333

Query: 192 SQTRIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           SQTRIEGGAKA+LTSEDLALQHVRVIY RTALFFWFDVE+KL
Sbjct: 334 SQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKL 375

[Close]

BLAST of Lag0040541 vs. ExPASy Swiss-Prot
Match: Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 6.3e-83
Identity = 153/228 (67.11%), Postives = 179/228 (78.51%), Query Frame = 0


Query: 14  VTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGD 73
           ++F     DRYNTALVCHRWRYLACHPRLWLRV+R +KDLS+PGVF  IE+AV+AARPGD
Sbjct: 47  LSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGD 106

Query: 74  TILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKA 133
           TILI  GG +  SNIQI KPLCL+GGGE+P+ETTL C RGS+SALE LST KL+NLTVKA
Sbjct: 107 TILIVAGGNYRVSNIQIKKPLCLVGGGEIPDETTLVCARGSDSALELLSTCKLANLTVKA 166

Query: 134 ELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKL--------LPSPVKGGY 193
           ELGCCLLHR GRL IDGCVLQCE+NPLD+LSCPIV TA  + +        +   V G  
Sbjct: 167 ELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKI 226

Query: 194 -TDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYK 233
             + V+V QTRIEGGAKAV T  DL LQ VRV+Y++  L+FWFDV+Y+
Sbjct: 227 KANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVMYSKAYLYFWFDVDYE 274

[Close]

BLAST of Lag0040541 vs. ExPASy TrEMBL
Match: A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 3.2e-114
Identity = 207/219 (94.52%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74
           +F     DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT
Sbjct: 54  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 113

Query: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134
           ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE
Sbjct: 114 ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 173

Query: 135 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQT 194
           LGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPS VKGGYT GVSVS T
Sbjct: 174 LGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHT 233

Query: 195 RIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           RIEGGAKAVLTSEDL LQHVRVIY RTALFFWFDVEYKL
Sbjct: 234 RIEGGAKAVLTSEDLTLQHVRVIYARTALFFWFDVEYKL 272

[Close]

BLAST of Lag0040541 vs. ExPASy TrEMBL
Match: A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.7e-113
Identity = 206/219 (94.06%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74
           +F     DRYNTALVCHRWRYLACHPRLWLRVERSIKDLSE GVFPTIEAAVAAARPGDT
Sbjct: 45  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDT 104

Query: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134
           ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFL TSKLSNLTVKAE
Sbjct: 105 ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAE 164

Query: 135 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQT 194
           LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVC+A+PDKLLPS VKGGYTDGVSVSQT
Sbjct: 165 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQT 224

Query: 195 RIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           RIEGGAKAVLTSEDLALQHVRVIY RTALFFWFDVEY L
Sbjct: 225 RIEGGAKAVLTSEDLALQHVRVIYARTALFFWFDVEYNL 263

[Close]

BLAST of Lag0040541 vs. ExPASy TrEMBL
Match: A0A5A7SZI1 (F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G003020 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.6e-113
Identity = 205/219 (93.61%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74
           +F     DRYNTALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDT
Sbjct: 54  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDT 113

Query: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134
           ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE
Sbjct: 114 ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 173

Query: 135 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQT 194
           LGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPS VKGGYT GVSVS T
Sbjct: 174 LGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHT 233

Query: 195 RIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           RIEGGAKAVLTSEDL LQHVRVIY RTAL FWFDVEYKL
Sbjct: 234 RIEGGAKAVLTSEDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of Lag0040541 vs. ExPASy TrEMBL
Match: A0A1S3BG99 (F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.6e-113
Identity = 205/219 (93.61%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 15  TFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDT 74
           +F     DRYNTALVCHRWRYLACHPRLWLRVER+IKDLSEPGVFPTIEAAVAAARPGDT
Sbjct: 54  SFLSPIPDRYNTALVCHRWRYLACHPRLWLRVERTIKDLSEPGVFPTIEAAVAAARPGDT 113

Query: 75  ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 134
           ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE
Sbjct: 114 ILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAE 173

Query: 135 LGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSVSQT 194
           LGCCLLHRKGRLI+DGCVLQCESNPLDYLSCPIVCTASPDKLLPS VKGGYT GVSVS T
Sbjct: 174 LGCCLLHRKGRLIVDGCVLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHT 233

Query: 195 RIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           RIEGGAKAVLTSEDL LQHVRVIY RTAL FWFDVEYKL
Sbjct: 234 RIEGGAKAVLTSEDLTLQHVRVIYARTALLFWFDVEYKL 272

[Close]

BLAST of Lag0040541 vs. ExPASy TrEMBL
Match: A0A6J1G1V1 (F-box protein SKIP5-like OS=Cucurbita moschata OX=3662 GN=LOC111449901 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 205/222 (92.34%), Postives = 210/222 (94.59%), Query Frame = 0


Query: 12  FSVTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARP 71
           F+    I FADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSE GVFPT+EAAVAAARP
Sbjct: 154 FTFLSPIPFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARP 213

Query: 72  GDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTV 131
           GDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFC+RGSESALEFL TSKLSNLTV
Sbjct: 214 GDTILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTV 273

Query: 132 KAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLLPSPVKGGYTDGVSV 191
           KAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPD L  S VKGGYTDGVSV
Sbjct: 274 KAELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSV 333

Query: 192 SQTRIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYKL 234
           SQTRIEGGAKA+LTSEDLALQHVRVIY RTALFFWFDVE+KL
Sbjct: 334 SQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKL 375

[Close]

BLAST of Lag0040541 vs. TAIR 10
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 308.5 bits (789), Expect = 4.5e-84
Identity = 153/228 (67.11%), Postives = 179/228 (78.51%), Query Frame = 0


Query: 14  VTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGD 73
           ++F     DRYNTALVCHRWRYLACHPRLWLRV+R +KDLS+PGVF  IE+AV+AARPGD
Sbjct: 47  LSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAARPGD 106

Query: 74  TILIATGGVHSASNIQITKPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKA 133
           TILI  GG +  SNIQI KPLCL+GGGE+P+ETTL C RGS+SALE LST KL+NLTVKA
Sbjct: 107 TILIVAGGNYRVSNIQIKKPLCLVGGGEIPDETTLVCARGSDSALELLSTCKLANLTVKA 166

Query: 134 ELGCCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKL--------LPSPVKGGY 193
           ELGCCLLHR GRL IDGCVLQCE+NPLD+LSCPIV TA  + +        +   V G  
Sbjct: 167 ELGCCLLHRSGRLTIDGCVLQCETNPLDHLSCPIVSTAGDEDIENILSHVEVKETVTGKI 226

Query: 194 -TDGVSVSQTRIEGGAKAVLTSEDLALQHVRVIYTRTALFFWFDVEYK 233
             + V+V QTRIEGGAKAV T  DL LQ VRV+Y++  L+FWFDV+Y+
Sbjct: 227 KANSVTVLQTRIEGGAKAVSTRGDLVLQRVRVMYSKAYLYFWFDVDYE 274

[Close]

BLAST of Lag0040541 vs. TAIR 10
Match: AT3G54480.2 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 95.1 bits (235), Expect = 7.8e-20
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 14  VTFAIEFADRYNTALVCHRWRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAAR 71
           ++F     DRYNTALVCHRWRYLACHPRLWLRV+R +KDLS+PGVF  IE+AV+AAR
Sbjct: 47  LSFLSPIPDRYNTALVCHRWRYLACHPRLWLRVDRFVKDLSQPGVFLNIESAVSAAR 103

The following BLAST results are available for this feature:

BLAST of Lag0040541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655907.1	2.1e-123	95.71	F-box protein SKIP5 isoform X2 [Cucumis sativus]	[more]
XP_004142419.1	6.6e-114	94.52	F-box protein SKIP5 isoform X1 [Cucumis sativus] >KGN52308.1 hypothetical protei...	[more]
XP_022139176.1	5.6e-113	94.06	F-box protein SKIP5 [Momordica charantia]	[more]
XP_008446937.1	7.3e-113	93.61	PREDICTED: F-box protein SKIP5 [Cucumis melo] >KAA0034751.1 F-box protein SKIP5 ...	[more]
XP_022945754.1	2.1e-112	92.34	F-box protein SKIP5-like [Cucurbita moschata]	[more]

BLAST of Lag0040541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94FT2	6.3e-83	67.11	F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1	[more]

BLAST of Lag0040541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRR7	3.2e-114	94.52	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ...	[more]
A0A6J1CBW5	2.7e-113	94.06	F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1	[more]
A0A5A7SZI1	3.6e-113	93.61	F-box protein SKIP5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G...	[more]
A0A1S3BG99	3.6e-113	93.61	F-box protein SKIP5 OS=Cucumis melo OX=3656 GN=LOC103489501 PE=4 SV=1	[more]
A0A6J1G1V1	1.0e-112	92.34	F-box protein SKIP5-like OS=Cucurbita moschata OX=3662 GN=LOC111449901 PE=4 SV=1	[more]

BLAST of Lag0040541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54480.1	4.5e-84	67.11	SKP1/ASK-interacting protein 5	[more]
AT3G54480.2	7.8e-20	73.68	SKP1/ASK-interacting protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 15..43 e-value: 1.4E-5 score: 26.8
None	No IPR available	PANTHER	PTHR14695:SF4	PROTEIN NESSUN DORMA	coord: 16..49 coord: 50..232
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 16..49
IPR045140	SHC SH2 domain-binding protein 1-like	PANTHER	PTHR14695	SHC SH2-DOMAIN BINDING PROTEIN 1-RELATED	coord: 50..232
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 20..56
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 56..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040541.1	Lag0040541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding