Lag0040498 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040498
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cytochrome c oxidase assembly protein cox16
Location	chr13: 5349203 .. 5350606 (-)
RNA-Seq Expression	Lag0040498
Synteny	Lag0040498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGGGCTTGTTTCTGCCCTGATGACATCCTTGTTCAGGGTAGTTGAGAAGGTAGCAAAATCATTGCTTCTGTTTCTGCCCTGTTGACACATTAATTTGAGGCAGGAGACAGGGCAATGGTTTTTTTTTTTTTTTAATGAAAATGTTGAGCAAAATGATTTACTTTGGAGTAACATTTTCCTCCAGGTCATTATGAGTTTCTACTTATACTCTAAATGTTACATTCTCTTATATTATATGTCATACACTCTAAATGTTACATTCTCTTATATGTCTTACAAATAACAAGTGAAAATTGTGTTTAGAAATTAGAAATACCTTCTATTCTCTGCAACTTGAATGTTGCAACCATTAGCATCTTTTCTCATGTTCATCAATTCAGGTTTTTCCATGGTTTGCACAATGACCAGTGCCGAGGCAGGAATGGGTCAGTCTACAGAACCAAAGAAGATTGCCTCTGCCACCAATGCAGCTCAGACAACTCCATCCATGTTTCGAAGATGGGGCAGAAGGCACCCATTTATCAGATATGGACTCCCAATGATCTCTCTCACTGTGCTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGGTTAGTGGTTGCTGGGATTGATTCAAACTTCAAAGTGACAATGTTTTGTTCTTTTGGAGATCAATTTAATTTACAGTATCTTATTTTCCTAGTAGAGAAATATATCTCCTCAGGATTGTGATGGCCTGATCTAGAACTCTGAAAAACCTGTCTTATACAAAAGAATTATGCTGATTGCTAAAACGCTTCGAGAATGGAAATTTCGTGTACAGTCCTATAAACTTGACATTCTCTACTGTCTGGCCTGCTTTTCTCAACTGTTTCCTGTAAATAAATATCTTTCCCAGTGCTCTCTTTCATATCCTGGAAAGTTCTTTTTCGAGTACACTGTTAAAGAAAAAGAGGGAAGACTTCTTTTTAGCTATCTGCATAGCAGTACTATAAAAAGTGGTTGAATCAAGATCATGAGAGTTGTAATGTTCCCTATGTGTGCTTTGTATGTTGTCTTATATGTTAAATTATTAATTTCCTATTTTCCATTTGTTACTCTTTTAAAAGACTTGTCGGACTTTGTAGTTCAGTAAAGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTATCAAGAACAGGACCTATAGATGCATATAAGCCGAAAAATATATCTTTGGAAGAGGAGCTGAGGGTATAACTCTTTCTCATCGCAACTCATTTGTTATCATCTACAGTTTCACTTATATTCAGCCTAATTGTTACTGATTTTCAGGCTTTACAAGAAAAGGTAGACATCAACAACTATGAATACAAGAGAATTCCAAAGCCTACCGACCGAACGTCGTAA

mRNA sequence

ATGTTAGGGGCTTGTTTCTGCCCTGATGACATCCTTGTTCAGGGTTTTTCCATGGTTTGCACAATGACCAGTGCCGAGGCAGGAATGGGTCAGTCTACAGAACCAAAGAAGATTGCCTCTGCCACCAATGCAGCTCAGACAACTCCATCCATGTTTCGAAGATGGGGCAGAAGGCACCCATTTATCAGATATGGACTCCCAATGATCTCTCTCACTGTGCTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGTAAAGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTATCAAGAACAGGACCTATAGATGCATATAAGCCGAAAAATATATCTTTGGAAGAGGAGCTGAGGGCTTTACAAGAAAAGGTAGACATCAACAACTATGAATACAAGAGAATTCCAAAGCCTACCGACCGAACGTCGTAA

Coding sequence (CDS)

ATGTTAGGGGCTTGTTTCTGCCCTGATGACATCCTTGTTCAGGGTTTTTCCATGGTTTGCACAATGACCAGTGCCGAGGCAGGAATGGGTCAGTCTACAGAACCAAAGAAGATTGCCTCTGCCACCAATGCAGCTCAGACAACTCCATCCATGTTTCGAAGATGGGGCAGAAGGCACCCATTTATCAGATATGGACTCCCAATGATCTCTCTCACTGTGCTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGTAAAGATATTGCAAAGGTAAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTATCAAGAACAGGACCTATAGATGCATATAAGCCGAAAAATATATCTTTGGAAGAGGAGCTGAGGGCTTTACAAGAAAAGGTAGACATCAACAACTATGAATACAAGAGAATTCCAAAGCCTACCGACCGAACGTCGTAA

Protein sequence

MLGACFCPDDILVQGFSMVCTMTSAEAGMGQSTEPKKIASATNAAQTTPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEYKRIPKPTDRTS

Homology

[Close]

BLAST of Lag0040498 vs. NCBI nr
Match: XP_008446874.1 (PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_008446875.1 PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_016900287.1 PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 2.9e-62
Identity = 121/131 (92.37%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 22  MTSAEAGMGQSTEPKKIASATNAAQTTPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 81
           MTS EAGMG+STEPKKI+SA+NAA+ +PSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGESTEPKKISSASNAARASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 82  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 141
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAYKPKNISLEEELRALQE+VDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQEQVDINNYEY 120

Query: 142 KRIPKPTDRTS 153
           KRIP+PTDRTS
Sbjct: 121 KRIPRPTDRTS 131

[Close]

BLAST of Lag0040498 vs. NCBI nr
Match: XP_022956367.1 (uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956369.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956370.1 uncharacterized protein LOC111458129 [Cucurbita moschata])

HSP 1 Score: 248.4 bits (633), Expect = 3.9e-62
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 22  MTSAEAGMGQSTEPKKIASATNAAQTTPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 81
           MTS EAGMGQSTE KK  SA NAA+++PSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 82  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 141
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 142 KRIPKPTDRTS 153
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Lag0040498 vs. NCBI nr
Match: XP_004142437.1 (uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_031742066.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 5.0e-62
Identity = 121/131 (92.37%), Postives = 127/131 (96.95%), Query Frame = 0


Query: 22  MTSAEAGMGQSTEPKKIASATNAAQTTPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 81
           MTS EAGMGQS EPKKI+SA+NA + +PSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGQSAEPKKISSASNATRASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 82  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 141
           LLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAYKPKNISLEEELRALQ+KVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEELRALQQKVDINNYEY 120

Query: 142 KRIPKPTDRTS 153
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

[Close]

BLAST of Lag0040498 vs. NCBI nr
Match: XP_038891357.1 (uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891358.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891360.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891361.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_038891362.1 uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida])

HSP 1 Score: 247.7 bits (631), Expect = 6.6e-62
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 22  MTSAEAGMGQSTEPKKIASATNAAQTTPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 81
           MTS EAG+GQSTEPKKIAS  NA + +PSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGIGQSTEPKKIASVNNATRASPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 82  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 141
           LLQGSKDIAKV+DDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVRDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 142 KRIPKPTDRTS 153
           KRIPKPTD+TS
Sbjct: 121 KRIPKPTDQTS 131

[Close]

BLAST of Lag0040498 vs. NCBI nr
Match: XP_023533207.1 (uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215.1 uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 247.3 bits (630), Expect = 8.6e-62
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = 0


Query: 22  MTSAEAGMGQSTEPKKIASATNAAQTTPSMFRRWGRRHPFIRYGLPMISLTVLGAVGLGH 81
           MTS EAGMGQSTE KK  SA NAA+++PSMF+RWGRRHPFIRYGLPMISLTVLGAVGLGH
Sbjct: 1   MTSTEAGMGQSTEQKKSVSANNAARSSPSMFKRWGRRHPFIRYGLPMISLTVLGAVGLGH 60

Query: 82  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 141
           LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY
Sbjct: 61  LLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEY 120

Query: 142 KRIPKPTDRTS 153
           KRIPKPTDRTS
Sbjct: 121 KRIPKPTDRTS 131

The following BLAST results are available for this feature:

BLAST of Lag0040498 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446874.1	2.9e-62	92.37	PREDICTED: uncharacterized protein LOC103489460 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_022956367.1	3.9e-62	93.89	uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 unchar...	[more]
XP_004142437.1	5.0e-62	92.37	uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438....	[more]
XP_038891357.1	6.6e-62	92.37	uncharacterized protein LOC120080793 isoform X2 [Benincasa hispida] >XP_03889135...	[more]
XP_023533207.1	8.6e-62	93.13	uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215....	[more]

BLAST of Lag0040498 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020164	Cytochrome c oxidase assembly protein COX16	PFAM	PF14138	COX16	coord: 62..148 e-value: 3.3E-20 score: 72.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040498.1	Lag0040498.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0031966	mitochondrial membrane