Lag0040492 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040492
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNL-type domain-containing protein
Location	chr13: 5299487 .. 5301150 (-)
RNA-Seq Expression	Lag0040492
Synteny	Lag0040492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGAGGCGAATTCTCTCTCTCGCTTTTCGTTATCGGTCCAAGACCTCTCTTCCCCATGGTGAGTATCCATTTCTCTTCTCTCAGTCGAAACCCTATTAGTCCTATCTATATCCTTTTCGCCGATTTTCTCTGGTGCTTCGGAACTATTGGCGTCCGTTATTTGTTTTGTTGCCTGCTTCATTCATGGGTGAATTTGGTATTCTCCGTTAATTGGAAAATCTTGTGTTCAAGTGGTAAAATGAGTGTATTGACGATTTGTTTCCCAACTTCTCAAGGAGAATCAAGTAAAAATTATGCTTATCTATGATATAAATGGATGAATATTCCGGAAGAGTTCTTTCAACTGTCTTCAAAGTTAAGCTGGTTGTGTACAGTGATTTACATGATTTCTTTGTGATATACAAAATAAGCCCAGTTCCTTTGTTGAATTTGTGCCTGCCCCTGGGTTTCGTATTAATGCTTCAAATCGTGAAGTATGAAGTTATGATGTTCCTAATTTGATCCATTTCCCCCATGAAATGGTATTTGAACATTGTCTCCAGTTATTGACTTTTGTGCTTTGTAATGGACAATTTGGGATCTCAAAATGAGCGTAGTTCAACGGTAATTGACATGTATCTTCGACCAAGAGTTAGAAGTTTCTAACCTCCAACAATCCCTCCACCCCCAATGTTGTTGAACTCAGGGGAAAAGAAAAGACAGTTTGGAATCTGGATAATTTGATCTTAGCATTCAAATGTTCAAGTGCTGTATTATGGTTTGTACTTTGTACAAAGGCTGCATTATGGTTTTGAAGCAACTTGTGAAGTTTCAAGTGCTCTTGTATTAAAAAAGTTGGAGGAAAATTTCATGTAGCTTTAAAAGAATTAATATTCTTGAAATCATTTCGTTAGCTGCTGTCCCAATCTCGATGGTTTCTTCAGTTTGAATGTATTTAAACTCTTTTTGTTTGTTATCTTGGCATAAGATTCATGTTTTCTTTTATTTCTAGTCATTGGCAGAGTGTCTTGCCATTTCTATACCACGAATCTCTTACCCAAGTTGACTCTCTCTTTCAACATTAAGAAACTTCAGCATCTCAAAAGATTCTTTGCAATAATACATTTATCTTTTATGATTTGTTATGTTTCAATTGCTGACAAGTACAGCTTTTGATGGCAGAGAGCACTAGTCAGATTCACCCTTTTGCAAATTCATGGTTCTTGACTGGGCACAGATTTTCCAGGAGAGGGAATCAGACCGTGACAAGTCCAGCAATTGTCGAGGATTCTAAAGATAATGAAGATAAGAAGCCGAGGCCGATCTCTGACTCGGTTGATCCCCTTCCAGAAAACAAGGATGATAGTTCTGCTGTGAAGTATTCCGTTCTCTCCAACTTAAAAACCTCCCCAAGGCATGACCTTGCCATGATCTTCACTTGCAAAGTCTGCGAGACAAGATCAATCAAGACAGTTTGCCGCGAATCATATGAGAAGGGCGTGGTAGTGGCACGTTGCAGTGGATGCAACAATCTACACCTGATTGCAGACCATCTTGGGTGGTTCGGCGAGCCAGGCAGCGTCGAAGACTTCCTGGCTGCTCGTGGCGAGGAAGTTCGAAAAGGTTCTCTTGATTCTCTAAGCTTGACACTTGAAGATTTGGCTGGAAAGAAACTCTGA

mRNA sequence

ATGGCGACGAGGCGAATTCTCTCTCTCGCTTTTCGTTATCGGTCCAAGACCTCTCTTCCCCATGAGAGCACTAGTCAGATTCACCCTTTTGCAAATTCATGGTTCTTGACTGGGCACAGATTTTCCAGGAGAGGGAATCAGACCGTGACAAGTCCAGCAATTGTCGAGGATTCTAAAGATAATGAAGATAAGAAGCCGAGGCCGATCTCTGACTCGGTTGATCCCCTTCCAGAAAACAAGGATGATAGTTCTGCTGTGAAGTATTCCGTTCTCTCCAACTTAAAAACCTCCCCAAGGCATGACCTTGCCATGATCTTCACTTGCAAAGTCTGCGAGACAAGATCAATCAAGACAGTTTGCCGCGAATCATATGAGAAGGGCGTGGTAGTGGCACGTTGCAGTGGATGCAACAATCTACACCTGATTGCAGACCATCTTGGGTGGTTCGGCGAGCCAGGCAGCGTCGAAGACTTCCTGGCTGCTCGTGGCGAGGAAGTTCGAAAAGGTTCTCTTGATTCTCTAAGCTTGACACTTGAAGATTTGGCTGGAAAGAAACTCTGA

Coding sequence (CDS)

ATGGCGACGAGGCGAATTCTCTCTCTCGCTTTTCGTTATCGGTCCAAGACCTCTCTTCCCCATGAGAGCACTAGTCAGATTCACCCTTTTGCAAATTCATGGTTCTTGACTGGGCACAGATTTTCCAGGAGAGGGAATCAGACCGTGACAAGTCCAGCAATTGTCGAGGATTCTAAAGATAATGAAGATAAGAAGCCGAGGCCGATCTCTGACTCGGTTGATCCCCTTCCAGAAAACAAGGATGATAGTTCTGCTGTGAAGTATTCCGTTCTCTCCAACTTAAAAACCTCCCCAAGGCATGACCTTGCCATGATCTTCACTTGCAAAGTCTGCGAGACAAGATCAATCAAGACAGTTTGCCGCGAATCATATGAGAAGGGCGTGGTAGTGGCACGTTGCAGTGGATGCAACAATCTACACCTGATTGCAGACCATCTTGGGTGGTTCGGCGAGCCAGGCAGCGTCGAAGACTTCCTGGCTGCTCGTGGCGAGGAAGTTCGAAAAGGTTCTCTTGATTCTCTAAGCTTGACACTTGAAGATTTGGCTGGAAAGAAACTCTGA

Protein sequence

MATRRILSLAFRYRSKTSLPHESTSQIHPFANSWFLTGHRFSRRGNQTVTSPAIVEDSKDNEDKKPRPISDSVDPLPENKDDSSAVKYSVLSNLKTSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCSGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKKL

Homology

[Close]

BLAST of Lag0040492 vs. NCBI nr
Match: XP_038891384.1 (DNL-type zinc finger protein isoform X1 [Benincasa hispida])

HSP 1 Score: 327.8 bits (839), Expect = 6.1e-86
Identity = 166/187 (88.77%), Postives = 171/187 (91.44%), Query Frame = 0


Query: 1   MATRRILSLAFRYRSKT--SLPHESTSQIHPFANSWFLTGHRFSRRGNQTVTSPAIVEDS 60
           M +RR LSLA RYRSKT  SLPHEST  IHPFANSWFLTGHRFSRRGNQTV +PAI EDS
Sbjct: 1   MTSRRFLSLALRYRSKTSLSLPHESTCGIHPFANSWFLTGHRFSRRGNQTVATPAIAEDS 60

Query: 61  KDNEDKKPRPISDSVDPLPENKDDSSAVKYSVLSNLKTSPRHDLAMIFTCKVCETRSIKT 120
           KDNED K  PISD  DPL ENKDD+SAVKYSVLSNLK+SPRHDLAMIFTCKVCETRSIKT
Sbjct: 61  KDNEDNKLTPISDLGDPLHENKDDTSAVKYSVLSNLKSSPRHDLAMIFTCKVCETRSIKT 120

Query: 121 VCRESYEKGVVVARCSGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTL 180
           VCRESYEKGVVVARC GC+NLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTL
Sbjct: 121 VCRESYEKGVVVARCGGCSNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTL 180

Query: 181 EDLAGKK 186
           EDLAGKK
Sbjct: 181 EDLAGKK 187

[Close]

BLAST of Lag0040492 vs. NCBI nr
Match: XP_022138898.1 (uncharacterized protein LOC111009963 [Momordica charantia])

HSP 1 Score: 312.0 bits (798), Expect = 3.5e-81
Identity = 153/183 (83.61%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 4   RRILSLAFRYRSKTSLPHESTSQIHPFANSWFLTGHRFSRRGNQTVTSPAIVEDSKDNED 63
           RRI SL  RYRS+TSLPHE T QIHPFANS FLTGHRF RRGNQT+ +PA+ EDSKDNED
Sbjct: 3   RRIFSLVSRYRSQTSLPHECTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNED 62

Query: 64  KKPRPISDSVDPLPENK-DDSSAVKYSVLSNLKTSPRHDLAMIFTCKVCETRSIKTVCRE 123
            K +P+SDS+DPL + K DDS+AVKYSV+SNLK SPRHDLAMIFTCKVCETRSIKTVCR 
Sbjct: 63  NKLQPVSDSIDPLDQEKNDDSAAVKYSVISNLKMSPRHDLAMIFTCKVCETRSIKTVCRS 122

Query: 124 SYEKGVVVARCSGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLA 183
           SYEKGVVVARC GCNNLHLIADHLGWFGEPGS+EDFLAARGEEVRKGS+DSLSLTL+DLA
Sbjct: 123 SYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLA 182

Query: 184 GKK 186
           GKK
Sbjct: 183 GKK 185

[Close]

BLAST of Lag0040492 vs. NCBI nr
Match: XP_004142433.2 (uncharacterized protein LOC101207740 [Cucumis sativus] >KGN52257.1 hypothetical protein Csa_009137 [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 2.5e-79
Identity = 155/184 (84.24%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MATRRILSLAFRYRSKTSLPHESTSQIHPFANSWFLTGHRFSRRGNQTVTSPAIVEDSKD 60
           MA RR LSLAFR+R +TS   EST  IH FANSWFLTGH+F+RR N T  +PAI EDSKD
Sbjct: 38  MAARRFLSLAFRHRLQTSPSLESTCPIHSFANSWFLTGHKFTRRENHTEATPAIAEDSKD 97

Query: 61  NEDKKPRPISDSVDPLPENKDDSSAVKYSVLSNLKTSPRHDLAMIFTCKVCETRSIKTVC 120
           NED K RPISD   PL ENKDD+S+VKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVC
Sbjct: 98  NEDNKLRPISDLGKPLHENKDDTSSVKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTVC 157

Query: 121 RESYEKGVVVARCSGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLED 180
           RESYEKGVVVARC GCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLED
Sbjct: 158 RESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLED 217

Query: 181 LAGK 185
           LAGK
Sbjct: 218 LAGK 221

[Close]

BLAST of Lag0040492 vs. NCBI nr
Match: XP_008446866.1 (PREDICTED: DNL-type zinc finger protein [Cucumis melo] >XP_016900169.1 PREDICTED: DNL-type zinc finger protein [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 4.7e-78
Identity = 152/184 (82.61%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MATRRILSLAFRYRSKTSLPHESTSQIHPFANSWFLTGHRFSRRGNQTVTSPAIVEDSKD 60
           MA RR LSLAFR+R +TS   ES S +HPFANSWFLTG+RF RR   T  +PAI E+SKD
Sbjct: 1   MAARRFLSLAFRHRLQTSPSPESASPVHPFANSWFLTGYRFLRRETHTEATPAIAEESKD 60

Query: 61  NEDKKPRPISDSVDPLPENKDDSSAVKYSVLSNLKTSPRHDLAMIFTCKVCETRSIKTVC 120
           NED K RPIS+  DPL ENKDD+S+VKYSVLSNLK SPRHDLAMIFTCKVCETRSIKTVC
Sbjct: 61  NEDTKLRPISELGDPLHENKDDTSSVKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTVC 120

Query: 121 RESYEKGVVVARCSGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLED 180
           RESYEKGVVVARC GC+NLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLED
Sbjct: 121 RESYEKGVVVARCGGCSNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLED 180

Query: 181 LAGK 185
           LAGK
Sbjct: 181 LAGK 184

[Close]

BLAST of Lag0040492 vs. NCBI nr
Match: XP_038891386.1 (DNL-type zinc finger protein isoform X2 [Benincasa hispida])

HSP 1 Score: 300.4 bits (768), Expect = 1.0e-77
Identity = 149/164 (90.85%), Postives = 153/164 (93.29%), Query Frame = 0


Query: 22  ESTSQIHPFANSWFLTGHRFSRRGNQTVTSPAIVEDSKDNEDKKPRPISDSVDPLPENKD 81
           EST  IHPFANSWFLTGHRFSRRGNQTV +PAI EDSKDNED K  PISD  DPL ENKD
Sbjct: 3   ESTCGIHPFANSWFLTGHRFSRRGNQTVATPAIAEDSKDNEDNKLTPISDLGDPLHENKD 62

Query: 82  DSSAVKYSVLSNLKTSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCSGCNNLHL 141
           D+SAVKYSVLSNLK+SPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARC GC+NLHL
Sbjct: 63  DTSAVKYSVLSNLKSSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCSNLHL 122

Query: 142 IADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKK 186
           IADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKK
Sbjct: 123 IADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLEDLAGKK 166

[Close]

BLAST of Lag0040492 vs. ExPASy Swiss-Prot
Match: Q0IH40 (DNL-type zinc finger protein OS=Xenopus laevis OX=8355 GN=dnlz PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-16
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 94  LKTSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCSGCNNLHLIADHLGWFGE-- 153
           L  +P     +I+TCKVC TRS KT+ + +Y KGVV+ RC GC N H+IAD+LGWF +  
Sbjct: 74  LPAAPSSHYRLIYTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLE 133

Query: 154 -PGSVEDFLAARGEEVRK 169
              ++E+ LAA+GE+V++
Sbjct: 134 GRRNIEEILAAKGEQVQR 151

[Close]

BLAST of Lag0040492 vs. ExPASy Swiss-Prot
Match: Q9D113 (DNL-type zinc finger protein OS=Mus musculus OX=10090 GN=Dnlz PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.9e-15
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 104 MIFTCKVCETRSIKTVCRESYEKGVVVARCSGCNNLHLIADHLGWFGE---PGSVEDFLA 163
           +++TCKVC TRS K + + +Y +GVV+  C GC N H+IAD+L WF +     ++E+ LA
Sbjct: 75  LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRNIEEILA 134

Query: 164 ARGEEVRKGSLD-SLSLTLE 180
           ARGEEVR+ S D +L L LE
Sbjct: 135 ARGEEVRRVSGDGALELILE 154

[Close]

BLAST of Lag0040492 vs. ExPASy Swiss-Prot
Match: A1L1P7 (DNL-type zinc finger protein OS=Danio rerio OX=7955 GN=dnlz PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.5e-14
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 104 MIFTCKVCETRSIKTVCRESYEKGVVVARCSGCNNLHLIADHLGWFGE---PGSVEDFLA 163
           +++TCKVC TRS+K + + +Y KGVV+  C GC N H+IAD+L WF +     ++E+ LA
Sbjct: 83  LVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWFSDLEGKRNIEEILA 142

Query: 164 ARGEEVRK 169
           A+GE VR+
Sbjct: 143 AKGESVRR 150

[Close]

BLAST of Lag0040492 vs. ExPASy Swiss-Prot
Match: Q5SXM8 (DNL-type zinc finger protein OS=Homo sapiens OX=9606 GN=DNLZ PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-13
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 104 MIFTCKVCETRSIKTVCRESYEKGVVVARCSGCNNLHLIADHLGWFGE---PGSVEDFLA 163
           +++TCKVC TRS K + + +Y +GVV+  C GC N H+IAD+LGWF +     ++E+ L 
Sbjct: 71  LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILT 130

Query: 164 ARGEEV-RKGSLDSLSLTLE 180
           ARGE+V R     +L L LE
Sbjct: 131 ARGEQVHRVAGEGALELVLE 150

[Close]

BLAST of Lag0040492 vs. ExPASy Swiss-Prot
Match: Q09759 (Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC24H6.02c PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.4e-10
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 0


Query: 80  KDDSSAVKYSVLSNLKTSPRHDLAMIFTCKVCETRSIKTVCRESYEKGVVVARCSGCNNL 139
           KD +S V        +  P+    + FTC VC TRS     +++Y  G V+ +C  C N 
Sbjct: 54  KDLASGVPSVKSDADQLQPKPTYNVSFTCTVCNTRSNHNFSKQAYHNGTVLVQCPKCKNR 113

Query: 140 HLIADHLGWFGEPG-SVEDFLAARGEEVRKG 170
           HL+ADHL  F E   ++ED LA +GE  +KG
Sbjct: 114 HLMADHLKIFSEERVTIEDILAKKGETFKKG 144

The following BLAST results are available for this feature:

BLAST of Lag0040492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891384.1	6.1e-86	88.77	DNL-type zinc finger protein isoform X1 [Benincasa hispida]	[more]
XP_022138898.1	3.5e-81	83.61	uncharacterized protein LOC111009963 [Momordica charantia]	[more]
XP_004142433.2	2.5e-79	84.24	uncharacterized protein LOC101207740 [Cucumis sativus] >KGN52257.1 hypothetical ...	[more]
XP_008446866.1	4.7e-78	82.61	PREDICTED: DNL-type zinc finger protein [Cucumis melo] >XP_016900169.1 PREDICTED...	[more]
XP_038891386.1	1.0e-77	90.85	DNL-type zinc finger protein isoform X2 [Benincasa hispida]	[more]

BLAST of Lag0040492 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0IH40	2.4e-16	48.72	DNL-type zinc finger protein OS=Xenopus laevis OX=8355 GN=dnlz PE=2 SV=1	[more]
Q9D113	5.9e-15	50.00	DNL-type zinc finger protein OS=Mus musculus OX=10090 GN=Dnlz PE=1 SV=1	[more]
A1L1P7	8.5e-14	48.53	DNL-type zinc finger protein OS=Danio rerio OX=7955 GN=dnlz PE=2 SV=1	[more]
Q5SXM8	1.1e-13	46.25	DNL-type zinc finger protein OS=Homo sapiens OX=9606 GN=DNLZ PE=1 SV=1	[more]
Q09759	7.4e-10	38.46	Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 104..164 e-value: 1.9E-25 score: 88.6
IPR007853	Zinc finger, DNL-type	PROSITE	PS51501	ZF_DNL	coord: 97..186 score: 17.642818
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..82
None	No IPR available	PANTHER	PTHR20922:SF13	DNL-TYPE ZINC FINGER PROTEIN	coord: 37..184
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 37..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040492.1	Lag0040492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0030150	protein import into mitochondrial matrix
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0008270	zinc ion binding