Lag0040449 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040449
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	telomeric repeat-binding factor 2-like isoform X2
Location	chr13: 4929370 .. 4929854 (+)
RNA-Seq Expression	Lag0040449
Synteny	Lag0040449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTTCTGTTCATTGTCTTGAAAGCAGGAAAGGATGAAGTAGAAGTGATACTCTGTGATAAGAATGTTTGGAAGAAGCTGACAAATATGAATACTCGATATGAAGCTTTGAAACTGATAGGATATTATCTGGGTAAAGCATGAGAGGTTCTTGACCCGTCATTCGTTCCATTTTGCTTGGATGGATAAAGGGATGACAAATGAAATGCAAAATAAAATCCTGGTTTCGTCTCCTTGAAGTCGTGCATGTGGTAAATGGCGAGGTTGAGGACCTCTCTGAAGCGTCATATTTCATTAGGGAAATCATTCAGCTGGGCAATTTGACGAATGCAGTGACTTTCTGGCACATTCATGGAGAACTCAATACTTTGGCTCATTCTCTTGCTATTAAAGAGTTTGTGGTTATCCTCTCTAAGCTAGATTTTAATGCACTTTACAGTTTACTTAACGGAAACAGCTTGCAGCCATCTGCAGCCTAG

mRNA sequence

ATGGAAAAACTTCTGTTCATTGTCTTGAAAGCAGGAAAGGATGAAGTAGAAGTGATACTCTGTGATAAGAATGTTTGGAAGAAGCTGACAAATATGAATACTCGATATGAAGCTTTGAAACTGATAGGATATTATCTGGTCGTGCATGTGGTAAATGGCGAGGTTGAGGACCTCTCTGAAGCGTCATATTTCATTAGGGAAATCATTCAGCTGGGCAATTTGACGAATGCAGTGACTTTCTGGCACATTCATGGAGAACTCAATACTTTGGCTCATTCTCTTGCTATTAAAGAGTTTGTGGTTATCCTCTCTAAGCTAGATTTTAATGCACTTTACAGTTTACTTAACGGAAACAGCTTGCAGCCATCTGCAGCCTAG

Coding sequence (CDS)

ATGGAAAAACTTCTGTTCATTGTCTTGAAAGCAGGAAAGGATGAAGTAGAAGTGATACTCTGTGATAAGAATGTTTGGAAGAAGCTGACAAATATGAATACTCGATATGAAGCTTTGAAACTGATAGGATATTATCTGGTCGTGCATGTGGTAAATGGCGAGGTTGAGGACCTCTCTGAAGCGTCATATTTCATTAGGGAAATCATTCAGCTGGGCAATTTGACGAATGCAGTGACTTTCTGGCACATTCATGGAGAACTCAATACTTTGGCTCATTCTCTTGCTATTAAAGAGTTTGTGGTTATCCTCTCTAAGCTAGATTTTAATGCACTTTACAGTTTACTTAACGGAAACAGCTTGCAGCCATCTGCAGCCTAG

Protein sequence

MEKLLFIVLKAGKDEVEVILCDKNVWKKLTNMNTRYEALKLIGYYLVVHVVNGEVEDLSEASYFIREIIQLGNLTNAVTFWHIHGELNTLAHSLAIKEFVVILSKLDFNALYSLLNGNSLQPSAA

Homology

[Close]

BLAST of Lag0040449 vs. NCBI nr
Match: KAG6605382.1 (Telomeric repeat-binding factor 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 9   LKAGKDEVEVILCDKNVWKKLTNMNTRYEALKLIGYYL 47
           L+  KDEVE  L DK VWKKL NMNTRYEALKLIG YL
Sbjct: 138 LEEWKDEVEAALWDKTVWKKLVNMNTRYEALKLIGDYL 175

[Close]

BLAST of Lag0040449 vs. NCBI nr
Match: KAG7035336.1 (hypothetical protein SDJN02_02131, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 9   LKAGKDEVEVILCDKNVWKKLTNMNTRYEALKLIGYYL 47
           L+  KDEVE  L DK VWKKL NMNTRYEALKLIG YL
Sbjct: 138 LEEWKDEVEAALWDKTVWKKLVNMNTRYEALKLIGDYL 175

[Close]

BLAST of Lag0040449 vs. NCBI nr
Match: XP_023532585.1 (uncharacterized protein LOC111794704 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-05
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 9   LKAGKDEVEVILCDKNVWKKLTNMNTRYEALKLIGYYL 47
           L+  KD+VEV L DK VWKKL NMNTRYEALKLIG YL
Sbjct: 138 LEEWKDKVEVALWDKTVWKKLVNMNTRYEALKLIGDYL 175

[Close]

BLAST of Lag0040449 vs. NCBI nr
Match: XP_022947187.1 (uncharacterized protein LOC111451133 [Cucurbita moschata])

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-04
Identity = 28/34 (82.35%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 13  KDEVEVILCDKNVWKKLTNMNTRYEALKLIGYYL 47
           KDEVE  L DK VWKKL NMNTRYEALKLIG YL
Sbjct: 125 KDEVEAALWDKIVWKKLVNMNTRYEALKLIGDYL 158

[Close]

BLAST of Lag0040449 vs. NCBI nr
Match: XP_023007150.1 (uncharacterized protein LOC111499729 isoform X2 [Cucurbita maxima])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 9   LKAGKDEVEVILCDKNVWKKLTNMNTRYEALKLIGYYL 47
           L+  KD+VE  L DK VWKKL NMN+RYEALKLIG YL
Sbjct: 121 LEEWKDKVEAALWDKTVWKKLVNMNSRYEALKLIGDYL 158

The following BLAST results are available for this feature:

BLAST of Lag0040449 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605382.1	2.7e-05	76.32	Telomeric repeat-binding factor 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035336.1	2.7e-05	76.32	hypothetical protein SDJN02_02131, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023532585.1	2.7e-05	76.32	uncharacterized protein LOC111794704 [Cucurbita pepo subsp. pepo]	[more]
XP_022947187.1	1.0e-04	82.35	uncharacterized protein LOC111451133 [Cucurbita moschata]	[more]
XP_023007150.1	2.3e-04	71.05	uncharacterized protein LOC111499729 isoform X2 [Cucurbita maxima]	[more]

BLAST of Lag0040449 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040449.1	Lag0040449.1	mRNA