Lag0040434 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040434
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-directed RNA polymerase I subunit like
Location	chr13: 4749998 .. 4750492 (+)
RNA-Seq Expression	Lag0040434
Synteny	Lag0040434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGGTTTCTAAATCTCCCATGCCAGTGGAATTCCTCATCTCTCCAATTTCTCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATTCACTCTCCATCACGCCTTCCTCAGGCCGCAATCTCAAGTTCATAGAATCCGCTCGAGATTCACGGCGTTCTCGAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGGAGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCGGATCCGGATAACATCTTGGCGGTGGCCTTGACTGGTTTGCTGGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTTTGGCTATTTTAGTGGCGGCTCTTAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

mRNA sequence

ATGTTAGGGTTTCTAAATCTCCCATGCCAGTGGAATTCCTCATCTCTCCAATTTCTCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATTCACTCTCCATCACGCCTTCCTCAGGCCGCAATCTCAAGTTCATAGAATCCGCTCGAGATTCACGGCGTTCTCGAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGGAGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCGGATCCGGATAACATCTTGGCGGTGGCCTTGACTGGTTTGCTGGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTTTGGCTATTTTAGTGGCGGCTCTTAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

Coding sequence (CDS)

ATGTTAGGGTTTCTAAATCTCCCATGCCAGTGGAATTCCTCATCTCTCCAATTTCTCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATTCACTCTCCATCACGCCTTCCTCAGGCCGCAATCTCAAGTTCATAGAATCCGCTCGAGATTCACGGCGTTCTCGAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGGAGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCGGATCCGGATAACATCTTGGCGGTGGCCTTGACTGGTTTGCTGGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTTTGGCTATTTTAGTGGCGGCTCTTAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

Protein sequence

MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRCKFTLHHAFLRPQSQVHRIRSRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

Homology

[Close]

BLAST of Lag0040434 vs. NCBI nr
Match: XP_022139143.1 (uncharacterized protein LOC111010120 [Momordica charantia])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 137/168 (81.55%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQFLSSI---SSSSSLSTRSL-RCKFTLHHAFLRPQSQVHRIRSR 60
           MLGF  LPCQW+S+S++ LSS    SSSS +S R++ R KFTLH+A L  +SQ+ R R+R
Sbjct: 1   MLGFRTLPCQWSSASVRLLSSTPTPSSSSKISLRTVPRFKFTLHYALLMTRSQIPRNRAR 60

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTAFS N  NGLGGNIKEREGER GAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL
Sbjct: 61  FTAFSGNGDNGLGGNIKEREGERTGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 168

[Close]

BLAST of Lag0040434 vs. NCBI nr
Match: XP_023549272.1 (uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 5.1e-52
Identity = 132/168 (78.57%), Postives = 139/168 (82.74%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSR 60
           MLGFL +P QW  S    LSS SS  SLSTRS       KF LH++    +SQ+   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLSSSSSPFSLSTRSSLSFPLFKFPLHYS----ESQIPGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTA +SNN NGLGGNIKEREGERNGAKGSNGGDDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FTALASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Lag0040434 vs. NCBI nr
Match: KAG7032002.1 (hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50
Identity = 130/168 (77.38%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSR 60
           MLGFL +P QW  S    L S SS  SLSTRS       KF LH+     +SQ+   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLPSSSSPFSLSTRSSLSFSLFKFPLHYL----ESQIPGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTA +SNN NGLGGNIKEREGERNGAKGSNG DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FTALASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Lag0040434 vs. NCBI nr
Match: XP_022957096.1 (uncharacterized protein LOC111458579 [Cucurbita moschata])

HSP 1 Score: 208.0 bits (528), Expect = 6.2e-50
Identity = 129/168 (76.79%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSR 60
           MLGFL +P QW  S    L S SS  SLSTRS       KF LH++    +SQ+   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLPSSSSPFSLSTRSSLSFSLFKFPLHYS----ESQIPGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTA +SNN NGLGGNIKEREGERNGAKGS G DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FTALASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Lag0040434 vs. NCBI nr
Match: XP_022993576.1 (uncharacterized protein LOC111489528 [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49
Identity = 128/168 (76.19%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQFLSSISSSSSLSTRSLRC----KFTLHHAFLRPQSQVHRIRSR 60
           MLGFL +P QW  S    LSS SS   LSTRS       KF LH++    +SQ+   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLSSSSSPFPLSTRSFLSFPLFKFPLHYS----ESQISGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           F A +SNN NGLGGNIKEREGERNGAKGS G DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FAALASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

The following BLAST results are available for this feature:

BLAST of Lag0040434 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139143.1	1.6e-58	81.55	uncharacterized protein LOC111010120 [Momordica charantia]	[more]
XP_023549272.1	5.1e-52	78.57	uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo]	[more]
KAG7032002.1	2.1e-50	77.38	hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022957096.1	6.2e-50	76.79	uncharacterized protein LOC111458579 [Cucurbita moschata]	[more]
XP_022993576.1	1.1e-49	76.19	uncharacterized protein LOC111489528 [Cucurbita maxima]	[more]

BLAST of Lag0040434 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..91
None	No IPR available	PANTHER	PTHR36789	TRANSMEMBRANE PROTEIN	coord: 28..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040434.1	Lag0040434.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane