Lag0040425 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040425
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RAB6-interacting golgin
Location	chr13: 4653125 .. 4655043 (+)
RNA-Seq Expression	Lag0040425
Synteny	Lag0040425

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTAAGAACGAAGATGAAGGAAATGGCGAGAGAGTTCTATCGGAGGGAGGTAGCGGTCGGGAGGAAGACGAGATGATGTCAAAACTGACCATATCTACATTGCAAGCTAGAGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTCGAATTACAGTTAACCCGTGCCGAGGAAGAAGCCAAACGCTTAGCACAAATTTGGGAAGTAAGTTCTATCATTACGTTTTTCGGTAACACACATAAAAAGGGTCCAAGTTTCACCCTTCCAGCAGCAGAATTCAAATACAAATTCTTAAACTGTAATTTCATTTCAATTAATTAGGTTTTATTACAAGTTAATTTGAAGTTTCAGATTAGTATCGATTAGGTCTTAAACTTCAAAAAGTTTCTAATAGACCCCTCAACTTTCAATTTTGTTTTTAATAGGTCCCTAAACTTTAAAAATGTCTAGTAGGTCATTGAATTTTCAATTTTGTATCTAATAGGTCTCTGATATATTTGATATTTTTAAAATTGAATGTTCGAGGACCTATTTGAAACTTTTTAACTATCAAAGACTAAATTGATACAATCCTGAAAACGAAGATGTAACTTAACCTAATTTTTAAATATATTACAAGAAGTTTATAATAATTTTTTTTTTTAAAAAAAATTGGTCGTCATAAAAATATAATGTTTTGGTGGGATGAAAATATATAATTACCCTGAATTTATGCCCAAACAGCATTCCCACAGTTACCCCCAAAATTTCTCTCCATTCTTTATAAAACTCATTTGAATTTTCTTTTATATCAAGTTTGTTCGAATTTAACTACTTTACCTTTTTCATAAGAGGATCAAAGATATTACAGAGAAACGCCAAACTATCCACAAAACAATGAAAAGAAACCTACATGCACGCAATATAATAATGAAAACAATTAATTATCATATAATTGGATTCAAGTTGTCTGCTATCAAATAAACTCTGCAATGTAATTAAAGTAAAAAGCAATATGAATTTTCTTAATAAATAATAATAAAAAAAAATTACTATAATGATGTTGTGGATGATTAAGGAGCTGGAGGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTAATGTGCGAAAAAGAATAGACACAGCCAAGAGAGAACTGAAATCACTGGGCCAGATCTACCAAAAGAAGGTGCTTCAATGTCATGAATTTCTTTTACTTTCAGTTCTTTTTAAGATCTGATCTTCATTTCTACAATTATTTTAAGTTTTAGGGTTCGTTTGGAATACATTTTAATTTAAATGTTTTTCAAGAATGCATTTTTAAAAAAACATTTTGTATAATTTTTTTTAGAATTTAAACACTCATATGTTTGGTTGCATTTTTTTATAAATGTTTTTATACACAAGTTATTGTATACTTAAAAAGTCTTTTAAAAAAAGTTAGTTTCAAGTGTTTCTCTCAAAATTGTTTATTTACCAATTTCATTTTCTAATTTGTCATTTTTAGTGGTTGTCAAACACTAGATTTTTTTAAAAATGATTTATTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACACACACTTACTCTGGTTCTAACTACACTAATTCGATAACGATAAGTTTCAGTTAAAAGTGGAAGATATAAGTTGAAAATCATTTCTTCTAAATGGTAACAGGAAAAAGAATATAAAGAAGTCCTGGAAATATTCAACGAAAAAAGCAACGAGAAAGCTCAGCTGCTGGCTAAACTAATGGAGGTATAATAATTCTAAACCCCATCTGTAACTTTTCCTCCATTTTCTTGGCAACCAAACAGTCTATAACACAACCGTCTAATCTTGTTAGCTGCTGGGTCAGAGTGAGAGATGGAGGATGAAAAAGCTCGAGGAATTGAGTAAGAATATAGAATCAACGAACTGA

mRNA sequence

ATGACAAGTAAGAACGAAGATGAAGGAAATGGCGAGAGAGTTCTATCGGAGGGAGGTAGCGGTCGGGAGGAAGACGAGATGATGTCAAAACTGACCATATCTACATTGCAAGCTAGAGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTCGAATTACAGTTAACCCGTGCCGAGGAAGAAGCCAAACGCTTAGCACAAATTTGGGAAGAGCTGGAGGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTAATGTGCGAAAAAGAATAGACACAGCCAAGAGAGAACTGAAATCACTGGGCCAGATCTACCAAAAGAAGGAAAAAGAATATAAAGAAGTCCTGGAAATATTCAACGAAAAAAGCAACGAGAAAGCTCAGCTGCTGGCTAAACTAATGGAGCTGCTGGGTCAGAGTGAGAGATGGAGGATGAAAAAGCTCGAGGAATTGAGTAAGAATATAGAATCAACGAACTGA

Coding sequence (CDS)

ATGACAAGTAAGAACGAAGATGAAGGAAATGGCGAGAGAGTTCTATCGGAGGGAGGTAGCGGTCGGGAGGAAGACGAGATGATGTCAAAACTGACCATATCTACATTGCAAGCTAGAGAAGAGGAGATTGAGAGGAAGAAGATGGAAGTAAAAGAGAAGGTCGAATTACAGTTAACCCGTGCCGAGGAAGAAGCCAAACGCTTAGCACAAATTTGGGAAGAGCTGGAGGTAATGGGAGATCCAATGGGGAAGGAAGTTGGTAATGTGCGAAAAAGAATAGACACAGCCAAGAGAGAACTGAAATCACTGGGCCAGATCTACCAAAAGAAGGAAAAAGAATATAAAGAAGTCCTGGAAATATTCAACGAAAAAAGCAACGAGAAAGCTCAGCTGCTGGCTAAACTAATGGAGCTGCTGGGTCAGAGTGAGAGATGGAGGATGAAAAAGCTCGAGGAATTGAGTAAGAATATAGAATCAACGAACTGA

Protein sequence

MTSKNEDEGNGERVLSEGGSGREEDEMMSKLTISTLQAREEEIERKKMEVKEKVELQLTRAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKRELKSLGQIYQKKEKEYKEVLEIFNEKSNEKAQLLAKLMELLGQSERWRMKKLEELSKNIESTN

Homology

[Close]

BLAST of Lag0040425 vs. NCBI nr
Match: XP_008446775.1 (PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo])

HSP 1 Score: 251.9 bits (642), Expect = 3.7e-63
Identity = 141/161 (87.58%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 1   MTSKNEDEGNGERVLSEGGSGREEDEMMSKLTISTLQAREEEIERKKMEVKEKVELQLTR 60
           MTSKN   GNG+RVL EG + R EDE +SKLT+STLQAREEEIERKKMEVKEKVE QLTR
Sbjct: 1   MTSKNGGGGNGDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVEFQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKRELKSLGQIYQKKEKEYKEVLEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDT KRELKSLGQI QKKEKEYKEV +I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKSNEKAQLLAKLMELLGQSERWRMKKLEELSKNIESTN 162
           FNEKSNEKAQLLA LMELLGQSE+WRMKKLEEL+KNIESTN
Sbjct: 121 FNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESTN 161

[Close]

BLAST of Lag0040425 vs. NCBI nr
Match: XP_004150485.1 (uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hypothetical protein Csa_008287 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 5.3e-62
Identity = 140/161 (86.96%), Postives = 147/161 (91.30%), Query Frame = 0


Query: 1   MTSKNEDEGNGERVLSEGGSGREEDEMMSKLTISTLQAREEEIERKKMEVKEKVELQLTR 60
           MTSKN   GN +RVL EG + R EDE +SKLT+STLQAREEEIERKKMEVKEKVELQLTR
Sbjct: 1   MTSKNGGGGNEDRVLLEGSNDRNEDETVSKLTVSTLQAREEEIERKKMEVKEKVELQLTR 60

Query: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKRELKSLGQIYQKKEKEYKEVLEI 120
           AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDT KRELKSLGQI QKKEKEYKEV +I
Sbjct: 61  AEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTVKRELKSLGQICQKKEKEYKEVQDI 120

Query: 121 FNEKSNEKAQLLAKLMELLGQSERWRMKKLEELSKNIESTN 162
           FNEKSNEKAQLLA LMELLGQSE+WRMKKLEEL+KNIES N
Sbjct: 121 FNEKSNEKAQLLATLMELLGQSEKWRMKKLEELNKNIESMN 161

[Close]

BLAST of Lag0040425 vs. NCBI nr
Match: XP_022968566.1 (uncharacterized protein LOC111467754 isoform X1 [Cucurbita maxima])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 137/162 (84.57%), Postives = 149/162 (91.98%), Query Frame = 0


Query: 1   MTSKNEDEGNGERVLSEGGSGREED-EMMSKLTISTLQAREEEIERKKMEVKEKVELQLT 60
           MTSK+ DEGNGER++SEG  GR+ED EM  +LT+STLQAREEEIER+KMEVKEKVELQL+
Sbjct: 1   MTSKHGDEGNGERIVSEGSRGRDEDGEMGKRLTVSTLQAREEEIERRKMEVKEKVELQLS 60

Query: 61  RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKRELKSLGQIYQKKEKEYKEVLE 120
           RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAK+ELKSLGQI QKKEKEYKEVLE
Sbjct: 61  RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKKEKEYKEVLE 120

Query: 121 IFNEKSNEKAQLLAKLMELLGQSERWRMKKLEELSKNIESTN 162
           IFNEK+NEKAQLL  LMELL QSERWRM KLEEL+K+I  TN
Sbjct: 121 IFNEKTNEKAQLLTTLMELLDQSERWRMNKLEELNKHIALTN 162

[Close]

BLAST of Lag0040425 vs. NCBI nr
Match: XP_022945697.1 (uncharacterized protein LOC111449848 isoform X1 [Cucurbita moschata])

HSP 1 Score: 242.7 bits (618), Expect = 2.2e-60
Identity = 137/162 (84.57%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 1   MTSKNEDEGNGERVLSEGGSGREE-DEMMSKLTISTLQAREEEIERKKMEVKEKVELQLT 60
           MTSK+ DEGNGER++SEG  GR++  EM  KLT+STLQAREEEIER+KMEVKEKVELQL+
Sbjct: 1   MTSKHRDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLS 60

Query: 61  RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKRELKSLGQIYQKKEKEYKEVLE 120
           RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAK+ELKSLGQI QKKEKEYKEVLE
Sbjct: 61  RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKKEKEYKEVLE 120

Query: 121 IFNEKSNEKAQLLAKLMELLGQSERWRMKKLEELSKNIESTN 162
           IFNEK+NEKAQLL  LMELL QSERWRM KLEELSK+I  TN
Sbjct: 121 IFNEKTNEKAQLLTTLMELLDQSERWRMNKLEELSKHIALTN 162

[Close]

BLAST of Lag0040425 vs. NCBI nr
Match: KAG6573875.1 (hypothetical protein SDJN03_27762, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.7 bits (613), Expect = 8.5e-60
Identity = 136/162 (83.95%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 1   MTSKNEDEGNGERVLSEGGSGREE-DEMMSKLTISTLQAREEEIERKKMEVKEKVELQLT 60
           MTSK+ DEGNGER++SEG  GR++  EM  KLT+STLQAREEEIER+KMEVKEKVELQL+
Sbjct: 1   MTSKHGDEGNGERIVSEGSRGRDDGGEMGKKLTVSTLQAREEEIERRKMEVKEKVELQLS 60

Query: 61  RAEEEAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKRELKSLGQIYQKKEKEYKEVLE 120
           RAEE+AKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAK+ELKSLGQI QKKEKEYKEVLE
Sbjct: 61  RAEEQAKRLAQIWEELEVMGDPMGKEVGNVRKRIDTAKKELKSLGQICQKKEKEYKEVLE 120

Query: 121 IFNEKSNEKAQLLAKLMELLGQSERWRMKKLEELSKNIESTN 162
           IFNEK+NEKAQLL  LMELL QSERWRM KLEELSK+I  TN
Sbjct: 121 IFNEKTNEKAQLLTTLMELLDQSERWRMNKLEELSKHIALTN 162

The following BLAST results are available for this feature:

BLAST of Lag0040425 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446775.1	3.7e-63	87.58	PREDICTED: uncharacterized protein LOC103489402 [Cucumis melo]	[more]
XP_004150485.1	5.3e-62	86.96	uncharacterized protein LOC101217540 [Cucumis sativus] >KGN52204.1 hypothetical ...	[more]
XP_022968566.1	1.3e-60	84.57	uncharacterized protein LOC111467754 isoform X1 [Cucurbita maxima]	[more]
XP_022945697.1	2.2e-60	84.57	uncharacterized protein LOC111449848 isoform X1 [Cucurbita moschata]	[more]
KAG6573875.1	8.5e-60	83.95	hypothetical protein SDJN03_27762, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0040425 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..127
None	No IPR available	COILS	Coil	Coil	coord: 33..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR21470:SF3	RAB6-INTERACTING GOLGIN (DUF662)	coord: 19..160
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 22..159 e-value: 9.6E-62 score: 207.4
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	RAB6-INTERACTING PROTEIN GORAB	coord: 19..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040425.1	Lag0040425.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus