Lag0040421 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040421
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S acidic ribosomal protein P2-like
Location	chr13: 4630823 .. 4632253 (+)
RNA-Seq Expression	Lag0040421
Synteny	Lag0040421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCGTAGCTGCCTATTTGCTCGCCGTGTTGGGAGGCAATTCCAGCCCTTCTGCTAAAGATTTGAAGGATATTCTTGGATCTGGTACAAATCCGAACCTCTCTCTCATTTCCTCCAATGTTTCTTCTTCGATTTAGTAATTTTTTGTGGAATTTCTCTGTCGATATTTGATTTTTCGTGTTCGTTTGGTTGATATGGTTTGTTAGTTTGTAGGATTGTTTTGTTTATTTAGTTTCTCGTGCTTTGATTTGTTTTGTTGCGATTCTGTGCGATGTTAGGCTGTGGAGTTTCGTTTTTGATGGTTTTCTGAAGCTGTAGTTGATTGTTTTCTCTCATTTTGGATGCTTGGCTTCTAATTCTGTTGAATTATCGACGGAATTTTTGAGAAAATACATGTCTCGCGAGTATTTTTGTTCTTCCGATATTGATCCTGTCGTTTGGCTTTGTTAGCGTTTTAGTTTATGAGGTTACTTTCGTTCGTTAACGTAGTTTTCGATAAATAACTGGTGAGTGAGATACCATAAGAACTAAGAAGAACGGTTTTGTTATCTGTGGCTGGACACGAATACGTTTTTCTGGGATGAAATTGGTATCATTTCTACATGTCTCGACGGTGCAAGAAATACAAATTTTGTTATTCTATTTCATGCTGTTTTTAGCTTTAATATGGTATCCTTCTAATTGTTGTTATTTGAAATGCTCATTTGCAATGCTTTTTTTTTTCCTTTTATTTCTACCCTTCTCTTAATGCCATTTATATCTCTGAATTTCGTTTCTCTCACATGCTTTGGACTTTGGATGTTGAATTACATGAAAGTTAAATATTTTGAATGGTGTCTTAATTTTCTTGTTGGAACCATTATGCAGTTGGAGTTGAAATTGATGATGAGAAAATCGAGCTTCTGTTGACGAGTGTGAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGTAGAGAGAAATTAGCATCTGTTCCGTCCGGTGGAGGTGCTGCTGTGGCAGTTGCCGCTGCAGGAGGCGGTGGGGGTGCTGCCGCCGCCGCCCCAGCCGAAGCAGAGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGTAAGCTTCATGAATCTTTATGAAAATATTGCTTGGAATTACATGTTAACAATCGAAATTCTCCCACTCTTAACCACTGAAAGAAAAAATCTTACGAAAATATAATAAAGGAAATGCCAAAAGATTGAAACAGTTCATGTTTACCCGAAACATCTAACAGAATGAACAGCTCTTAATCGACACATTCTCTCTGTTACCTAAACTTTCTTTAGGAATCTGTTTTTGTTTACTCCACCAATTTTTTTAATTGACCATTTTAATTCATGAAATTTCTTCTAATTCGTTTTTATTGTTTTGCAGGATATGGGCTTCAGTCTCTTCGATTAA

mRNA sequence

ATGAAGATCGTAGCTGCCTATTTGCTCGCCGTGTTGGGAGGCAATTCCAGCCCTTCTGCTAAAGATTTGAAGGATATTCTTGGATCTGTTGGAGTTGAAATTGATGATGAGAAAATCGAGCTTCTGTTGACGAGTGTGAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGTAGAGAGAAATTAGCATCTGTTCCGTCCGGTGGAGGTGCTGCTGTGGCAGTTGCCGCTGCAGGAGGCGGTGGGGGTGCTGCCGCCGCCGCCCCAGCCGAAGCAGAGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTCTTCGATTAA

Coding sequence (CDS)

ATGAAGATCGTAGCTGCCTATTTGCTCGCCGTGTTGGGAGGCAATTCCAGCCCTTCTGCTAAAGATTTGAAGGATATTCTTGGATCTGTTGGAGTTGAAATTGATGATGAGAAAATCGAGCTTCTGTTGACGAGTGTGAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGTAGAGAGAAATTAGCATCTGTTCCGTCCGGTGGAGGTGCTGCTGTGGCAGTTGCCGCTGCAGGAGGCGGTGGGGGTGCTGCCGCCGCCGCCCCAGCCGAAGCAGAGAAGAAAGAGGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTCTTCGATTAA

Protein sequence

MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGREKLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD

Homology

[Close]

BLAST of Lag0040421 vs. NCBI nr
Match: XP_008446770.1 (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-42
Identity = 105/115 (91.30%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLKDILGSVG EID+E+IELLL++VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAAVAVAA GGGGGAAA APAEA KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEA-KKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Lag0040421 vs. NCBI nr
Match: XP_004150488.1 (60S acidic ribosomal protein P2-4 [Cucumis sativus] >KGN52200.1 hypothetical protein Csa_009106 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNS+PSAKDLKDILGSVG E+D+E+I LLL++VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAAVAVAA GGGGGAAA APAEA KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEA-KKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Lag0040421 vs. NCBI nr
Match: XP_022957078.1 (60S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S acidic ribosomal protein P2-1-like [Cucurbita pepo subsp. pepo] >KAG6601213.1 60S acidic ribosomal protein P2-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032007.1 60S acidic ribosomal protein P2-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLKDILGSVG E+D++KIELL++SVKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAAVAVAAAGGGGGAAA A AE+ KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAES-KKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Lag0040421 vs. NCBI nr
Match: XP_022945075.1 (60S acidic ribosomal protein P2-2-like [Cucurbita moschata] >KAG6573879.1 60S acidic ribosomal protein P2-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-41
Identity = 102/115 (88.70%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLK+ILGSVG E+DDEKIELLL+SVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGG  AA  AE  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Lag0040421 vs. NCBI nr
Match: XP_023541212.1 (60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.9 bits (450), Expect = 4.8e-41
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNSSPSAKDLK+ILGSVG E+DDE+IELLL+SVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDERIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGGAA+AVAA GGGGG  AA  AE  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Lag0040421 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-33
Identity = 82/115 (71.30%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MK+VAA+LLAVL G +SP+  D+KDILGSVG E +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  VAVA+A  GGG    APA   KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Lag0040421 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-33
Identity = 82/115 (71.30%), Postives = 95/115 (82.61%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGN++PSA ++KDI+G+VG ++D E IELLL  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG AV+ A + GGGGAA    A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAA----APAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Lag0040421 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.6e-33
Identity = 85/115 (73.91%), Postives = 99/115 (86.09%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MK++AA+LLA+LGGN+SP+ +DLK IL SVG + DD+KIELLL+ VKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           +LASVPSGGG AVA AAAGGGGG A AA AE  KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGGVAVA-AAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]

BLAST of Lag0040421 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-32
Identity = 81/115 (70.43%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MK+VAAYLLAVL G +SP++ D+K ILGSVG E +D +IELLL  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           KLASVPSGGG  VAVA+A  GGG    A A   KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Lag0040421 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 137.5 bits (345), Expect = 9.5e-32
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNSSPSAKDLKDILGSVGVEIDDEKIELLLTSVKGKDITELIASGRE 60
           MK VAAYLLAVL GN+SPSA DL  IL SVG E+D+EK+ELLL+ + GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAAAGGGGGAAAAAPAEAEKKEEKVEEKEESDDDMGFSLFD 116
           K ASVP GGG     AAA   GGAA AA A   KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAAPAAGGAAPAAEA---KKEEKVEEKEESDDDMGFSLFD 112

The following BLAST results are available for this feature:

BLAST of Lag0040421 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446770.1	4.4e-42	91.30	PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo]	[more]
XP_004150488.1	1.7e-41	90.43	60S acidic ribosomal protein P2-4 [Cucumis sativus] >KGN52200.1 hypothetical pro...	[more]
XP_022957078.1	2.2e-41	90.43	60S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S ...	[more]
XP_022945075.1	2.2e-41	88.70	60S acidic ribosomal protein P2-2-like [Cucurbita moschata] >KAG6573879.1 60S ac...	[more]
XP_023541212.1	4.8e-41	87.83	60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0040421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51407	1.3e-33	71.30	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9LXM8	5.0e-33	71.30	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]
P41099	6.6e-33	73.91	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
Q9SLF7	1.5e-32	70.43	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P46252	9.5e-32	73.04	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 17..114 e-value: 3.8E-25 score: 88.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..115
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..115
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 2.2E-26 score: 93.7
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..115
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..115 e-value: 2.9132E-33 score: 110.046
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..115 score: 17.404461

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040421.1	Lag0040421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome