Lag0040406 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040406
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF2996 family protein
Location	chr13: 4511959 .. 4514557 (+)
RNA-Seq Expression	Lag0040406
Synteny	Lag0040406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGATTCTCAAAGGAGGAGGCGGAATCGGAGTTTCAACTGCTGCTTATTTTCCTCAGAATTCCAAGCCTTCCCCGATTTTCTCGATTCACACGGTACGATTCCTCGTTTTGTTCTGATTTCGATTCCGATTCTAATTCCGGTTCTTTAGTTTGTTGTTCGTGTCAATTGATTCTTGTTTTGGTTCTGTTGTGTTCAGACGTACAATTTATTCCTGACTCGAGTGCACTTTAATTGTTATACCTTTTTTTCTAGTTTTGTATTCTCTTTGAACATAGTTCTTGAGGAACTGGTGGTTGATTTTACTTGGTTGAGCTATTCTGACTGTGACTGTGAGGTGCTTGAGTAAAAAGAAAGGAAAGGAAAAGAGGAAAGTGACGCTTAGAAATCCTTCCAGAATCTTCATGTTCGTTAGTTTTGGTTTGTGAAATTTCAATGTGCACCGATAGAATAGCAGCACAATTTGGAATTGTAGTGCCAACATAAAGCAGTTCCGAGAAGAGAAAGATACCATAAGAACTTTGAAATGTTCTATTCTTTAACTATTTCAGTGATTGAATTCATTAAATCACTGCTGAACCCGAAAACTTAAGTTGATGAGTTGTGATAAATTTAATTATTAATTCTTCATATCCATTATGTTCCTCCTTACTTGTGACTTGGAACTTAGCACAAGGTCCAACAAGTGATTATTAATATTGATTGAAGAGTAAATGACACTGTAAGAATTCAAATTTAGATCTCCCGCACTATATCATGCTAAATCAAAATTGAGCTTAAAAGTAGGTTGATGGATGGTGGTAAATTTAATAATCAATTCACATTCTTAACGAGTTCAGTCTTTATTTTTTATTTTATCATTATTATTTTGTGATCTTCACTCCTGTTTCAATTGGGGGCCGAGTTACAAACAAGAGAGAAAAAGGAAGAGGAGCTACCGTTAGTAGAGAAAAAAAAATATACGAGAGTTTGAAATGGACACATAAGAGAAGAGGAAGGTAATCATACCCTTCACTTACTCCCCTCGGTATATATATATATTAAGAATACTACATTAAGGGATTTGAACCTAAGATATGAGGGAAGGCACTTATGCCTGACCATGTTGCTCAAGTCGGTGATATGATAGGTAGTTGTGGCAAAGGGAATCATAATAGTTGAGCCATAACTTCTGTTGTAGCTAAGCTATCTGTCTTTTTCTTTGATTGTTTCTAGAAATAAAATTTTTCTTCAACTTGTGATGTTGTCTTCATGTCATACCAGAAAGAACGCACGAATTCAATCACTTAAAAGAAAACGAAAAGGTCTAACCACTACTTTGGTGTATACATAAATGTTCTGAAGCAATTGACTAATAGTATCACCTAGCTTTTATGGTTATGGTTGAAATCTATATCTCTGTTTCTCCTTTACGGATAGCATCCCACTCTTTTCATATTATATATCTTTTTTTTTAATATCCGCGAGTGTTCAGACCAGTTTGCATGCACCTCAACTGATCTCACGAGATGACAGTTTAGCTCTATTATCATATTATAATTTTAGTTAAGAAAAAGAGTAGATATAACTTCCTTCAAATAAATTTGACTTGTGCAGGTGGTACATAAGCTTGGAGCTGAACGCAAAGTCATATGCTGCTCAACTTTGCAAGAATCATCTACTCCAACAGGTTAGTTGCTGACAAGTTTTTCAAAGTACGTCCATTGAAAGATTGACAGTGTGGCCCCGATATTTTCTGTCAATCTTTTTTCTCTTTCAAATGAAAAGGGTTAGACTTTGGTTCATTTATTTCTTTCTGCTTTGTTTTTTAATTCTCAATTCATGGCATCTGTTAAAATTGAAGTCTTTTCTATCAGTTGCTGCTGAGCCAAAGGAGATAAAGACAGTTCAGAAGGAAACTCCAGCAAAGCCCAAACCACCAGCAAAAGCGCCAACCAAGCCACTGCCTGAGTTGATGGAGGAGGATGTCATACCTTCACTGAAAGCGATACTCGAAGCACAAGCCGATGTCTCCAATATCGGATTATCATTCCAAGATGACAGAGTTAGTTTCTCCCCTCTGAATTCTCGTTCATTAATAAACTCTTAGCTTGGCCTCATTGAATTTGGATTATGGCAGTTGGATGGTTCATTCTTGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTACTTAAAAATTCTTATAGAATGCAATTATTTTGTCATTGTCAAGTCAAGTTTCATCACCCTTTAACTTCTGGTGTTCGCTACCTTTGGTTAAATACAAAATATGATGAATGTAAGTAAGAACAAATTATCAACAATCAGTCAATCAGTGATTATCTCAATCCCAAAACCCGACCCGTCGACGCGAAAAGAAAAGGAAACAACATCTAAACTCAATGTCTGATCTTCTTCAATGGTTGAATCGTGAACAGGTCCAAAAGGATTTTCACTATCTTCATATGGCAATGGAGGAAGCTCTGTTGAGCCCTTTCTGGTGGATGAGAAGAAAGTCACAGCAAAGCTTTTAGTGTTTTGGATTGAGAAGCGTTTGGCTGCACAAGGAATTATTCCAGTCTGGAAAGACTAA

mRNA sequence

ATGGCAATGATTCTCAAAGGAGGAGGCGGAATCGGAGTTTCAACTGCTGCTTATTTTCCTCAGAATTCCAAGCCTTCCCCGATTTTCTCGATTCACACGGTGGTACATAAGCTTGGAGCTGAACGCAAAGTCATATGCTGCTCAACTTTGCAAGAATCATCTACTCCAACAGTTGCTGCTGAGCCAAAGGAGATAAAGACAGTTCAGAAGGAAACTCCAGCAAAGCCCAAACCACCAGCAAAAGCGCCAACCAAGCCACTGCCTGAGTTGATGGAGGAGGATGTCATACCTTCACTGAAAGCGATACTCGAAGCACAAGCCGATGTCTCCAATATCGGATTATCATTCCAAGATGACAGATTGGATGGTTCATTCTTGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGATTTTCACTATCTTCATATGGCAATGGAGGAAGCTCTGTTGAGCCCTTTCTGGTGGATGAGAAGAAAGTCACAGCAAAGCTTTTAGTGTTTTGGATTGAGAAGCGTTTGGCTGCACAAGGAATTATTCCAGTCTGGAAAGACTAA

Coding sequence (CDS)

ATGGCAATGATTCTCAAAGGAGGAGGCGGAATCGGAGTTTCAACTGCTGCTTATTTTCCTCAGAATTCCAAGCCTTCCCCGATTTTCTCGATTCACACGGTGGTACATAAGCTTGGAGCTGAACGCAAAGTCATATGCTGCTCAACTTTGCAAGAATCATCTACTCCAACAGTTGCTGCTGAGCCAAAGGAGATAAAGACAGTTCAGAAGGAAACTCCAGCAAAGCCCAAACCACCAGCAAAAGCGCCAACCAAGCCACTGCCTGAGTTGATGGAGGAGGATGTCATACCTTCACTGAAAGCGATACTCGAAGCACAAGCCGATGTCTCCAATATCGGATTATCATTCCAAGATGACAGATTGGATGGTTCATTCTTGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGATTTTCACTATCTTCATATGGCAATGGAGGAAGCTCTGTTGAGCCCTTTCTGGTGGATGAGAAGAAAGTCACAGCAAAGCTTTTAGTGTTTTGGATTGAGAAGCGTTTGGCTGCACAAGGAATTATTCCAGTCTGGAAAGACTAA

Protein sequence

MAMILKGGGGIGVSTAAYFPQNSKPSPIFSIHTVVHKLGAERKVICCSTLQESSTPTVAAEPKEIKTVQKETPAKPKPPAKAPTKPLPELMEEDVIPSLKAILEAQADVSNIGLSFQDDRLDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD

Homology

[Close]

BLAST of Lag0040406 vs. NCBI nr
Match: XP_038891519.1 (uncharacterized protein LOC120080914 isoform X1 [Benincasa hispida])

HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 177/194 (91.24%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTAAYFPQNSKPSPIFSIHTVVHKLGAERKVICCSTLQESSTPTVAA 60
           MAMILKGG GIGVSTA YFP NSKPSP+FS+HT+VHKL AERKV+CCSTLQESSTPTVAA
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNSKPSPVFSLHTMVHKLAAERKVVCCSTLQESSTPTVAA 60

Query: 61  EPKEIKTVQKETPAKPKPPAKAPTKPLPELMEEDVIPSLKAILEAQADVSNIGLSFQDDR 120
           EPKEIKTV KE PAK KPPAKAP KPLPELMEEDVIPSLKAILEAQADVS+IGLSFQD+R
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMEEDVIPSLKAILEAQADVSDIGLSFQDNR 120

Query: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSFLKNGVPY+FWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKL+VFWIE
Sbjct: 121 LDGSFLKNGVPYTFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 195
           KRLAAQGIIPVWK+
Sbjct: 181 KRLAAQGIIPVWKN 194

[Close]

BLAST of Lag0040406 vs. NCBI nr
Match: XP_022956513.1 (uncharacterized protein LOC111458230 [Cucurbita moschata] >XP_023539763.1 uncharacterized protein LOC111800345 [Cucurbita pepo subsp. pepo] >KAG7032019.1 hypothetical protein SDJN02_06061 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.8 bits (909), Expect = 4.9e-94
Identity = 178/194 (91.75%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTAAYFPQNSKPSPIFSIHTVVHKLGAERKVICCSTLQESSTPTVAA 60
           MAMILKGGGGIGVSTA YFPQNSKPSP+FS+HT VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHT-VHKLPAERRVICCSTLQESSTPTVSA 60

Query: 61  EPKEIKTVQKETPAKPKPPAKAPTKPLPELMEEDVIPSLKAILEAQADVSNIGLSFQDDR 120
           EPKEIK VQKE PAKPKPPAKAP KPLP++MEEDVIPSLKAILEAQADV++I LSFQDDR
Sbjct: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120

Query: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE
Sbjct: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180

Query: 181 KRLAAQGIIPVWKD 195
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 193

[Close]

BLAST of Lag0040406 vs. NCBI nr
Match: XP_022986445.1 (uncharacterized protein LOC111484155 [Cucurbita maxima] >XP_022986526.1 uncharacterized protein LOC111484155 [Cucurbita maxima])

HSP 1 Score: 354.0 bits (907), Expect = 8.3e-94
Identity = 178/194 (91.75%), Postives = 186/194 (95.88%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTAAYFPQNSKPSPIFSIHTVVHKLGAERKVICCSTLQESSTPTVAA 60
           MAMILKGGGGIGVSTA YFPQNSKPSP+FS+HT VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHT-VHKLLAERRVICCSTLQESSTPTVSA 60

Query: 61  EPKEIKTVQKETPAKPKPPAKAPTKPLPELMEEDVIPSLKAILEAQADVSNIGLSFQDDR 120
           EPKEIK VQKE PAKPKPPAKAP KPLP++MEEDVIPSLKAILEAQADV++I LSFQDDR
Sbjct: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120

Query: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE
Sbjct: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180

Query: 181 KRLAAQGIIPVWKD 195
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 193

[Close]

BLAST of Lag0040406 vs. NCBI nr
Match: XP_004135038.1 (uncharacterized protein LOC101205552 [Cucumis sativus] >KGN52187.1 hypothetical protein Csa_009193 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 3.5e-92
Identity = 173/194 (89.18%), Postives = 182/194 (93.81%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTAAYFPQNSKPSPIFSIHTVVHKLGAERKVICCSTLQESSTPTVAA 60
           MAMILKGG GIGVSTA YFP N KPSP+FS+H +VHKL AERKVICCSTLQESSTPTVAA
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKTVQKETPAKPKPPAKAPTKPLPELMEEDVIPSLKAILEAQADVSNIGLSFQDDR 120
           EPKEIKTV KE PAK KPPAKAP KPLPELM+E+VIPSLKAILEAQADVS++ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 195
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 194

[Close]

BLAST of Lag0040406 vs. NCBI nr
Match: KAG6601225.1 (Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344.7 bits (883), Expect = 5.0e-91
Identity = 174/190 (91.58%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTAAYFPQNSKPSPIFSIHTVVHKLGAERKVICCSTLQESSTPTVAA 60
           MAMILKGGGGIGVSTA YFPQNSKPSP+FS+HT VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHT-VHKLPAERRVICCSTLQESSTPTVSA 60

Query: 61  EPKEIKTVQKETPAKPKPPAKAPTKPLPELMEEDVIPSLKAILEAQADVSNIGLSFQDDR 120
           EPKEIK VQKE PAKPKPPAKAP KPLP++MEEDVIPSLKAILEAQADV++I LSFQDDR
Sbjct: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120

Query: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE
Sbjct: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180

Query: 181 KRLAAQGIIP 191
           KRLAAQGIIP
Sbjct: 181 KRLAAQGIIP 189

The following BLAST results are available for this feature:

BLAST of Lag0040406 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891519.1	1.7e-94	91.24	uncharacterized protein LOC120080914 isoform X1 [Benincasa hispida]	[more]
XP_022956513.1	4.9e-94	91.75	uncharacterized protein LOC111458230 [Cucurbita moschata] >XP_023539763.1 unchar...	[more]
XP_022986445.1	8.3e-94	91.75	uncharacterized protein LOC111484155 [Cucurbita maxima] >XP_022986526.1 uncharac...	[more]
XP_004135038.1	3.5e-92	89.18	uncharacterized protein LOC101205552 [Cucumis sativus] >KGN52187.1 hypothetical ...	[more]
KAG6601225.1	5.0e-91	91.58	Replication protein A 14 kDa subunit B, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of Lag0040406 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021374	Protein of unknown function DUF2996	PFAM	PF11210	DUF2996	coord: 84..186 e-value: 8.1E-13 score: 48.9
IPR021374	Protein of unknown function DUF2996	PANTHER	PTHR36341	DUF2996 FAMILY PROTEIN	coord: 15..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040406.1	Lag0040406.1	mRNA