Lag0040388 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040388
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein
Locationchr13: 4388656 .. 4392702 (-)
RNA-Seq ExpressionLag0040388
SyntenyLag0040388
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTAATCGTGACAATTACATAGATATGACATGTAATATAATTAAGTTGGGATGAGAACTTTTTTGTCCTTTTATATTTTCCATTAATTTTTTAGATTTATAAATAAGGATAGCTAACTCATGATATTAAGACGCACCGATTAATTTATGAACATATCTAGATAGTGACATATTAATAAAATTAGCATTTTGATGAAAATGTATATATATATTTGTATTTTGAACTGATGTATATATTGTTGAAAAAAATAGTTCTAACTCTTTTTGAAAAATTATTATTATTTTAATTTTCCAACTGATGGAGCCAATTTTTCAAGTAAAACCAACCATATTTGGCCAAACTTATAATAGATTTTCAATTTAGAATGTCACAAAATCAAATGGATTGATATATTGTTCAACCCAGCGATATTCTCCAATAAGACGGCTTGAAGGCTAGGTATTATAAAGTCTAATTAACTACTAGTTAAAAAATAATAATAATAAATAAATAAATAATAACAAGTTTGTCTACCTTTATTGATGCTACGACTAAATGTGGAATTGGCATTGTATTACGTACTAAGGGAGGCATTTTGAAGGCAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCTAACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATTTTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGTGCTTTTCCTGCATGGATGGAACGGATGACACTCATGGAAAGCCATTTGTATGTTCCTTTTATTTCTTCTTAGTAATACATGAGCTCTATTTTAATCAAAAAAAAAAAATAAATAATAATAATAATAACAACAATGTGTTATTTCACGGTCTTCGTTAGTTTTATGGAAAAAATGAGAGAAAGAAAATTCAAAATAAAATGTTTCTCAATTCTAGGTTTAAATATTATTATTATTATATCCCTCAAATTCTAGTAGTTTTCGCTTTGGTTCGTTCTAACTTCTATACTTTCAAAATGTTCATTTTGGTCACTGTACTTCTAAAAATGATAAATTTGGTCCATTCATTTTCATTTTTTTCAATCATAATTTTAGCATGACACTTCACTTACTAAGGCCCGTTTGATAACGTTTTTTGGTTTTCGGTCTTTGAAAATTATGCTTGTTTTCACTTAATTTCCTTCTAGTGATTTTCATCTTTGTTAATAACACATTTGAGTTCGTAGCCAAATTTCAAAAACAAAACACAAGTACAGCCCCAGGTCGTTCGGCCCTTAACGACCCGACATTCCCCTGCGACGGGGTCCTCTCTCACATGCTTCCTAGGAAAATTCTCAGGAGGTCACCCAACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTATCTTGACCATACTTTCATGTCCTCAGGATCCCTCTCATCCGGATGTGACCTCGGTTCATTCATGTACCCCTCTTAACTCGGGTGTTACATTAGCTAATAAAATAAAGAAATTTATAGATGAAAGTAGTGTTTATAAACATAATTTTCAAAAACCAAAAATCAAGACCCCGTTTGACCATTTGGTTTTTAGTTTTTGAAAATTATGCTTGTTTTCCCTCAATTTCCTTACCATGGTTTTCATTTTTGTTAAGTAGACATTTGAGTTCTTAGCAAAATTCCAAAAACAAAAACAAGTTTTTGAATTTTTTTTTTTCAAAATTTGATTTAATTTTTGAAAACAAGGAAAGGATGTAGATAACAAAACAAAGAAAGTGGTGGATGAAAGTAGTGTTTATAAGCTTCATTTTCTAAAAAAAACAAAATGGTTATCAAACGGGATCCAAATAATTATCAAATGGGGTCTAAATTTCTTGAAATATAGTCATAAATTGGTATTAAAAGATTTCTACTATGCGTAAAATTTACGCTTAAATTTTGTAAAACAATGACTAACTAATATGACGTTGCATTCAGACAAGCAATAAGCTATAAGAAAATGAACATTTTGAAAGTACGGGGACCATAACAACAAAAATAAATCAAAACCAAAAGTAACCTAAATTATAAATACATTATTCCAATTGAGAGTTGATGCTTACATTATGACAACTAGAGAGGGAGAGTTGCTTACATAATATAATATAAGAAATAAAATAGAGATCGTTACATTTTAATAAAATATAAATTACACAATAAGTTGGGCGCTGCTGGTTTTATGTATTTATGTATGTATTTATTATTTATTATTATTATTATTTTAATTGGGCTGGTTTTATGTATTTATCTTATTTAAGTATAATAATAATTATTATTATTTTAGTAATGCTGGTTTTATGGATTACTGTGGGAAGGAAAGGAAAGCAGATGTCTCTTCGATCCCATCTCTTGCCATTGTTGTCTTTTGGAGGGTAGCGAAAAGTGTTCTTATTCATGAAGTTTGGAATTAAATTATTTGTGTTTTTCTTAGAATCAATTAAATTAGTTAATTAAGGGTCATTTAGAATACATTTTAATTTAAACACTAATATATTTTGTTACATTTCCTGGTAAGTGTTTTTTATACACAGGGTTAAGGTAGGGATTTAAACCTTTGACCTCTTGATCAGGGTATAAATTTTATGTTAGTTGAACTATGTTTTTGTTGGTTTTTCATAATTTTTTTCATGTCTTAAACCTGGATAAGCATAAAAAATTTCTACTTAAACTTTAGAACGAAGTGTTGCAGTTCATACCTTATATGGTAAGTTTTCGTTTGATAAATCATGGGAAAAAAAGTATTGTCACATGTTTGTCCAATGAATTATAAAATATATATTTGGTATGTAGCTTATAAGATTCAAACAAGAATAACATATGAGCAAGTTCTTTTTTTAGTTCAACTATTATGGATGTTGGGGATCGAATCATCAATCTAAAAGATTGTAATTGATGTCTTAACTGATGAACTATGACAAAAGAGAAAATACACATTGAGATTTTTTTTTCTCTCTTTTTTAATTTTACTAAATGCATAGAAAAAAGTCTAAAATAAAATGGGTAGAAAGAGAAGTGAAAAATTGTAGGTAACCAATATCTAAGGGTCAAGAAGAATATAGTTCAATTGACATAAAGTTGTACTAATGACTAAGAGGTTTGTGATTCGAATCTTTCACTTGGAAAAAAAACCAATACCTAAGGAGAGAAACATAGTACTTTAGTGCATATCTTGAGTTTTATTTTTAGTCAAATTGTTTAAAAGTCGTTGGAGAATGAATTAGGCCAAGTTTGGCCGCTATAAATTTGAGTGCCTTTTCATCTTCTATAACTCTACCTTGTTCTATTTGTACATTTGATTCATTTTCAATTTTTTTCTTATTATTGAAATCTATTCAATAACTCTCGCATTAAATAGATTCATAGAATCTATACAACAAATTAATTACACTAAGTGCATATCTTGAATTGTATGTCTTGAGTTTATTTTTAGTCAAAATTTTCAAAGGTCTATGGAGAGTAGATTAGGTCAAGTTTGACCCCTATAGATTTTCAATGTTGTGTTGTCTGTGACTTTTTTTCTTTTTTAAGGATATCAACATTTGAGAATGGTGGATTCGAATCTCCAACCTCTTATTGAGAGTACATGTCAATTACCGCTGAGTTATGCTCGTTTTGTCTAGATGACGAGAGTCCAGTAATCGAAAGCATCACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAGTACCATGA

mRNA sequence

ATGAAAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCTAACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATTTTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGAGGTCACCCAACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGATGACGAGAGTCCAGTAATCGAAAGCATCACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAGTACCATGA

Coding sequence (CDS)

ATGAAAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCTAACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATTTTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGAGGTCACCCAACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGATGACGAGAGTCCAGTAATCGAAAGCATCACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAGTACCATGA

Protein sequence

MKAQHHSISGCHSPLGAEAVAILTGLQLAKGLKVRRLTVLSDCLNLIKSINGDLQGQSSISTTLWDIEALLADFEIVNFHFVNRRYNRFAHNMASEGYSAPPCLWLGGHPTQNFSKRSLLNFKVPMIEPPKRKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP
Homology
[Close]
BLAST of Lag0040388 vs. NCBI nr
Match: PPR83386.1 (hypothetical protein GOBAR_AA37328 [Gossypium barbadense])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-13
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 133 KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 397 KCRTIDGDSPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 449

[Close]
BLAST of Lag0040388 vs. NCBI nr
Match: MBA0743511.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0 

Query: 133 KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY WTTDS++VP
Sbjct: 45  KCRTLDGDSPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWTTDSKVVP 97

[Close]
BLAST of Lag0040388 vs. NCBI nr
Match: KAG5070513.1 (hypothetical protein JHK85_002890 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 132 RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 309 RECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 362

[Close]
BLAST of Lag0040388 vs. NCBI nr
Match: KAG5103940.1 (hypothetical protein JHK82_040910 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 132 RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 68  RECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 121

[Close]
BLAST of Lag0040388 vs. NCBI nr
Match: KAG4976565.1 (hypothetical protein JHK86_036039 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0 

Query: 132 RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 125 RECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 178

The following BLAST results are available for this feature:
BLAST of Lag0040388 vs. NCBI nr
Match NameE-valueIdentityDescription
PPR83386.11.4e-1375.47hypothetical protein GOBAR_AA37328 [Gossypium barbadense][more]
MBA0743511.11.8e-1375.47hypothetical protein [Gossypium gossypioides][more]
KAG5070513.11.8e-1375.93hypothetical protein JHK85_002890 [Glycine max][more]
KAG5103940.11.8e-1375.93hypothetical protein JHK82_040910 [Glycine max][more]
KAG4976565.11.8e-1375.93hypothetical protein JHK86_036039 [Glycine max][more]
BLAST of Lag0040388 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..101
e-value: 1.5E-11
score: 46.4
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 6..96
e-value: 5.3E-19
score: 68.2
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 3..108
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 3..108
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 7..94
e-value: 4.23498E-19
score: 76.584
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 8..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040388.1Lag0040388.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005840 ribosome
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity