Lag0040388 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040388
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location	chr13: 4388656 .. 4392702 (-)
RNA-Seq Expression	Lag0040388
Synteny	Lag0040388

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGTAATCGTGACAATTACATAGATATGACATGTAATATAATTAAGTTGGGATGAGAACTTTTTTGTCCTTTTATATTTTCCATTAATTTTTTAGATTTATAAATAAGGATAGCTAACTCATGATATTAAGACGCACCGATTAATTTATGAACATATCTAGATAGTGACATATTAATAAAATTAGCATTTTGATGAAAATGTATATATATATTTGTATTTTGAACTGATGTATATATTGTTGAAAAAAATAGTTCTAACTCTTTTTGAAAAATTATTATTATTTTAATTTTCCAACTGATGGAGCCAATTTTTCAAGTAAAACCAACCATATTTGGCCAAACTTATAATAGATTTTCAATTTAGAATGTCACAAAATCAAATGGATTGATATATTGTTCAACCCAGCGATATTCTCCAATAAGACGGCTTGAAGGCTAGGTATTATAAAGTCTAATTAACTACTAGTTAAAAAATAATAATAATAAATAAATAAATAATAACAAGTTTGTCTACCTTTATTGATGCTACGACTAAATGTGGAATTGGCATTGTATTACGTACTAAGGGAGGCATTTTGAAGGCAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCTAACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATTTTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGTGCTTTTCCTGCATGGATGGAACGGATGACACTCATGGAAAGCCATTTGTATGTTCCTTTTATTTCTTCTTAGTAATACATGAGCTCTATTTTAATCAAAAAAAAAAAATAAATAATAATAATAATAACAACAATGTGTTATTTCACGGTCTTCGTTAGTTTTATGGAAAAAATGAGAGAAAGAAAATTCAAAATAAAATGTTTCTCAATTCTAGGTTTAAATATTATTATTATTATATCCCTCAAATTCTAGTAGTTTTCGCTTTGGTTCGTTCTAACTTCTATACTTTCAAAATGTTCATTTTGGTCACTGTACTTCTAAAAATGATAAATTTGGTCCATTCATTTTCATTTTTTTCAATCATAATTTTAGCATGACACTTCACTTACTAAGGCCCGTTTGATAACGTTTTTTGGTTTTCGGTCTTTGAAAATTATGCTTGTTTTCACTTAATTTCCTTCTAGTGATTTTCATCTTTGTTAATAACACATTTGAGTTCGTAGCCAAATTTCAAAAACAAAACACAAGTACAGCCCCAGGTCGTTCGGCCCTTAACGACCCGACATTCCCCTGCGACGGGGTCCTCTCTCACATGCTTCCTAGGAAAATTCTCAGGAGGTCACCCAACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGGTATAGGTAGTATCTATCAATTCTTTTAAGCTTATCTTGACCATACTTTCATGTCCTCAGGATCCCTCTCATCCGGATGTGACCTCGGTTCATTCATGTACCCCTCTTAACTCGGGTGTTACATTAGCTAATAAAATAAAGAAATTTATAGATGAAAGTAGTGTTTATAAACATAATTTTCAAAAACCAAAAATCAAGACCCCGTTTGACCATTTGGTTTTTAGTTTTTGAAAATTATGCTTGTTTTCCCTCAATTTCCTTACCATGGTTTTCATTTTTGTTAAGTAGACATTTGAGTTCTTAGCAAAATTCCAAAAACAAAAACAAGTTTTTGAATTTTTTTTTTTCAAAATTTGATTTAATTTTTGAAAACAAGGAAAGGATGTAGATAACAAAACAAAGAAAGTGGTGGATGAAAGTAGTGTTTATAAGCTTCATTTTCTAAAAAAAACAAAATGGTTATCAAACGGGATCCAAATAATTATCAAATGGGGTCTAAATTTCTTGAAATATAGTCATAAATTGGTATTAAAAGATTTCTACTATGCGTAAAATTTACGCTTAAATTTTGTAAAACAATGACTAACTAATATGACGTTGCATTCAGACAAGCAATAAGCTATAAGAAAATGAACATTTTGAAAGTACGGGGACCATAACAACAAAAATAAATCAAAACCAAAAGTAACCTAAATTATAAATACATTATTCCAATTGAGAGTTGATGCTTACATTATGACAACTAGAGAGGGAGAGTTGCTTACATAATATAATATAAGAAATAAAATAGAGATCGTTACATTTTAATAAAATATAAATTACACAATAAGTTGGGCGCTGCTGGTTTTATGTATTTATGTATGTATTTATTATTTATTATTATTATTATTTTAATTGGGCTGGTTTTATGTATTTATCTTATTTAAGTATAATAATAATTATTATTATTTTAGTAATGCTGGTTTTATGGATTACTGTGGGAAGGAAAGGAAAGCAGATGTCTCTTCGATCCCATCTCTTGCCATTGTTGTCTTTTGGAGGGTAGCGAAAAGTGTTCTTATTCATGAAGTTTGGAATTAAATTATTTGTGTTTTTCTTAGAATCAATTAAATTAGTTAATTAAGGGTCATTTAGAATACATTTTAATTTAAACACTAATATATTTTGTTACATTTCCTGGTAAGTGTTTTTTATACACAGGGTTAAGGTAGGGATTTAAACCTTTGACCTCTTGATCAGGGTATAAATTTTATGTTAGTTGAACTATGTTTTTGTTGGTTTTTCATAATTTTTTTCATGTCTTAAACCTGGATAAGCATAAAAAATTTCTACTTAAACTTTAGAACGAAGTGTTGCAGTTCATACCTTATATGGTAAGTTTTCGTTTGATAAATCATGGGAAAAAAAGTATTGTCACATGTTTGTCCAATGAATTATAAAATATATATTTGGTATGTAGCTTATAAGATTCAAACAAGAATAACATATGAGCAAGTTCTTTTTTTAGTTCAACTATTATGGATGTTGGGGATCGAATCATCAATCTAAAAGATTGTAATTGATGTCTTAACTGATGAACTATGACAAAAGAGAAAATACACATTGAGATTTTTTTTTCTCTCTTTTTTAATTTTACTAAATGCATAGAAAAAAGTCTAAAATAAAATGGGTAGAAAGAGAAGTGAAAAATTGTAGGTAACCAATATCTAAGGGTCAAGAAGAATATAGTTCAATTGACATAAAGTTGTACTAATGACTAAGAGGTTTGTGATTCGAATCTTTCACTTGGAAAAAAAACCAATACCTAAGGAGAGAAACATAGTACTTTAGTGCATATCTTGAGTTTTATTTTTAGTCAAATTGTTTAAAAGTCGTTGGAGAATGAATTAGGCCAAGTTTGGCCGCTATAAATTTGAGTGCCTTTTCATCTTCTATAACTCTACCTTGTTCTATTTGTACATTTGATTCATTTTCAATTTTTTTCTTATTATTGAAATCTATTCAATAACTCTCGCATTAAATAGATTCATAGAATCTATACAACAAATTAATTACACTAAGTGCATATCTTGAATTGTATGTCTTGAGTTTATTTTTAGTCAAAATTTTCAAAGGTCTATGGAGAGTAGATTAGGTCAAGTTTGACCCCTATAGATTTTCAATGTTGTGTTGTCTGTGACTTTTTTTCTTTTTTAAGGATATCAACATTTGAGAATGGTGGATTCGAATCTCCAACCTCTTATTGAGAGTACATGTCAATTACCGCTGAGTTATGCTCGTTTTGTCTAGATGACGAGAGTCCAGTAATCGAAAGCATCACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAGTACCATGA

mRNA sequence

ATGAAAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCTAACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATTTTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGAGGTCACCCAACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGATGACGAGAGTCCAGTAATCGAAAGCATCACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAGTACCATGA

Coding sequence (CDS)

ATGAAAGCGCAACATCACTCTATCTCTGGGTGTCATTCCCCGTTGGGGGCTGAAGCAGTTGCCATTCTGACGGGGCTTCAATTAGCAAAGGGCTTGAAGGTGAGACGTCTAACAGTTTTGTCAGATTGTTTGAATCTCATAAAGTCTATCAACGGTGATCTTCAAGGACAGTCAAGCATTTCTACGACCCTATGGGATATTGAAGCACTTCTGGCTGATTTTGAGATTGTTAATTTCCATTTTGTTAATCGTCGTTATAATAGGTTTGCTCATAATATGGCCAGTGAAGGCTACTCGGCACCTCCATGCTTATGGTTAGGAGGTCACCCAACACAGAACTTCTCCAAGCGAAGCTTGCTTAACTTCAAAGTTCCTATGATTGAGCCACCGAAAAGGAAGGTGCACCTTGTTGATGACGAGAGTCCAGTAATCGAAAGCATCACTGGCTTAAGCTCTGACTCGAGTAGCATGGGACACGTGGAATCTCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTTCTGGACAACCGATAGTGAAATAGTACCATGA

Protein sequence

MKAQHHSISGCHSPLGAEAVAILTGLQLAKGLKVRRLTVLSDCLNLIKSINGDLQGQSSISTTLWDIEALLADFEIVNFHFVNRRYNRFAHNMASEGYSAPPCLWLGGHPTQNFSKRSLLNFKVPMIEPPKRKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP

Homology

[Close]

BLAST of Lag0040388 vs. NCBI nr
Match: PPR83386.1 (hypothetical protein GOBAR_AA37328 [Gossypium barbadense])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-13
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 133 KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 397 KCRTIDGDSPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 449

[Close]

BLAST of Lag0040388 vs. NCBI nr
Match: MBA0743511.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 40/53 (75.47%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 133 KVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           K   +D +SPV ESIT L SD SSMGHVESRVNQQGPPCKAKY WTTDS++VP
Sbjct: 45  KCRTLDGDSPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWTTDSKVVP 97

[Close]

BLAST of Lag0040388 vs. NCBI nr
Match: KAG5070513.1 (hypothetical protein JHK85_002890 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 132 RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 309 RECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 362

[Close]

BLAST of Lag0040388 vs. NCBI nr
Match: KAG5103940.1 (hypothetical protein JHK82_040910 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 132 RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 68  RECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 121

[Close]

BLAST of Lag0040388 vs. NCBI nr
Match: KAG4976565.1 (hypothetical protein JHK86_036039 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-13
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 132 RKVHLVDDESPVIESITGLSSDSSSMGHVESRVNQQGPPCKAKYFWTTDSEIVP 186
           R+   +D ESPV ESIT L SD SSMGHVESRVNQQGPPCKAKY W TDSE+VP
Sbjct: 125 RECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 178

The following BLAST results are available for this feature:

BLAST of Lag0040388 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR83386.1	1.4e-13	75.47	hypothetical protein GOBAR_AA37328 [Gossypium barbadense]	[more]
MBA0743511.1	1.8e-13	75.47	hypothetical protein [Gossypium gossypioides]	[more]
KAG5070513.1	1.8e-13	75.93	hypothetical protein JHK85_002890 [Glycine max]	[more]
KAG5103940.1	1.8e-13	75.93	hypothetical protein JHK82_040910 [Glycine max]	[more]
KAG4976565.1	1.8e-13	75.93	hypothetical protein JHK86_036039 [Glycine max]	[more]

BLAST of Lag0040388 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..101 e-value: 1.5E-11 score: 46.4
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 6..96 e-value: 5.3E-19 score: 68.2
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 3..108
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 3..108
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 7..94 e-value: 4.23498E-19 score: 76.584
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040388.1	Lag0040388.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity