Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGTTGCAGGCTTCCTTCAATCCAATTCAATTCCCACATACCAAAGCCTCCTCATCCTTACGCCTGAGATCGCCCATGCTCATCAAAACCTCCATCTCTCAAACAGTTCTTCATCTCAATCTCAAGGCCGCCAGGATGAATCACTTCCAAGATTTTGAGCTCCAAGTTCGTAATTATGAGCTGGATCAGTTCGGTGTTGTCAACAATGCTGTTTATGCAAATTATTGCTCCAACGGTTACAATCGATCTCTTATACTTACTTCTTCATCTTTTAGGTTGTGTATCTATTTGATCTCTAACTTTAGGTTTTTGAACCCTGAAAGTTCGGGAACTGAACTTGTAATTTAACACATGAAAATTTCTGGCTTTGTCCTGGATTATAACCCATCTAAAAATTAAACTTGTTAGATTTGCTTTTCAAGACATTAATAAATCAACAACTTAATTAAATAGGTCGTCAAGAATTGATGGAAAGAATAACAGGCGTCAGTGCTGATGCAGTAGCTCGCAGTGGGAATGCACTCGCTTTATCAGATTTGTCTTTCAAGTTCCTTGCACCACTTAGAGTAAAACACCTTAATTTTTTTTTTATTTATTACATATTGCTCTATAAATTTTGCATCATACAATAATTTACTTAACATTATCTACTTTGATTTCTACTCTTGTTGTGTTGATGGATAAATTAGAGTGGAGACAGATTTGTTCTTAAGGTCAGGATCTCAAGCACCACAACCACTCGCATCTACATTGATCACTTAATTTTCAAGCTTCCAAATATGGAGGTTAATTTTCATTTAATCTCTGTTTACTAAAATTGCTTGCATGGTAATTAACATTATTATAATTTCACTTTGTCTTCTTTGATTTTCGTAGTCGATCTTAGAGGCAAAGGCTACTGCAGTTTGGCTCGATCAAAATTATCGTCCAATGCGTATCCCACAAGAATATTTAACCAAACTTGCTCAATTTGTTCGAGATCATGAGTCCAAGTGA
mRNA sequence
ATGTTGCAGTTGCAGGCTTCCTTCAATCCAATTCAATTCCCACATACCAAAGCCTCCTCATCCTTACGCCTGAGATCGCCCATGCTCATCAAAACCTCCATCTCTCAAACAGTTCTTCATCTCAATCTCAAGGCCGCCAGGATGAATCACTTCCAAGATTTTGAGCTCCAAGTTCGTAATTATGAGCTGGATCAGTTCGGTGTTGTCAACAATGCTGTTTATGCAAATTATTGCTCCAACGGTCGTCAAGAATTGATGGAAAGAATAACAGGCGTCAGTGCTGATGCAGTAGCTCGCAGTGGGAATGCACTCGCTTTATCAGATTTGTCTTTCAAGTTCCTTGCACCACTTAGAAGTGGAGACAGATTTGTTCTTAAGGTCAGGATCTCAAGCACCACAACCACTCGCATCTACATTGATCACTTAATTTTCAAGCTTCCAAATATGGAGTCGATCTTAGAGGCAAAGGCTACTGCAGTTTGGCTCGATCAAAATTATCGTCCAATGCGTATCCCACAAGAATATTTAACCAAACTTGCTCAATTTGTTCGAGATCATGAGTCCAAGTGA
Coding sequence (CDS)
ATGTTGCAGTTGCAGGCTTCCTTCAATCCAATTCAATTCCCACATACCAAAGCCTCCTCATCCTTACGCCTGAGATCGCCCATGCTCATCAAAACCTCCATCTCTCAAACAGTTCTTCATCTCAATCTCAAGGCCGCCAGGATGAATCACTTCCAAGATTTTGAGCTCCAAGTTCGTAATTATGAGCTGGATCAGTTCGGTGTTGTCAACAATGCTGTTTATGCAAATTATTGCTCCAACGGTCGTCAAGAATTGATGGAAAGAATAACAGGCGTCAGTGCTGATGCAGTAGCTCGCAGTGGGAATGCACTCGCTTTATCAGATTTGTCTTTCAAGTTCCTTGCACCACTTAGAAGTGGAGACAGATTTGTTCTTAAGGTCAGGATCTCAAGCACCACAACCACTCGCATCTACATTGATCACTTAATTTTCAAGCTTCCAAATATGGAGTCGATCTTAGAGGCAAAGGCTACTGCAGTTTGGCTCGATCAAAATTATCGTCCAATGCGTATCCCACAAGAATATTTAACCAAACTTGCTCAATTTGTTCGAGATCATGAGTCCAAGTGA
Protein sequence
MLQLQASFNPIQFPHTKASSSLRLRSPMLIKTSISQTVLHLNLKAARMNHFQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVARSGNALALSDLSFKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYRPMRIPQEYLTKLAQFVRDHESK
Homology
BLAST of Lag0040308 vs. NCBI nr
Match:
XP_022968132.1 (acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like [Cucurbita maxima] >XP_022968134.1 acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like [Cucurbita maxima])
HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 128/208 (61.54%), Postives = 154/208 (74.04%), Query Frame = 0
Query: 4 LQASFNPIQFP----HTKAS-----------------SSLRLRSPMLIKTSISQTVLHLN 63
LQAS NPIQ P H K + +SLRLRSP + ++SIS +
Sbjct: 2 LQASINPIQSPPPAFHYKTAGLAFPSSLVCPISRPSPTSLRLRSPSVTRSSISSS---FQ 61
Query: 64 LKAAR-MNHFQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVARSG 123
LKA + M+ F D EL+VR+YELDQFGVVNNAVYA+YC +GR EL+E I G+S DAVAR G
Sbjct: 62 LKAGKGMDGFLDVELKVRDYELDQFGVVNNAVYASYCQHGRHELLESI-GLSPDAVARDG 121
Query: 124 NALALSDLSFKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVW 183
+ALALS+LS KFLAPL+SGDRFV+KVRIS + R YIDH IFKLPNME ILEAKATAVW
Sbjct: 122 DALALSELSLKFLAPLKSGDRFVVKVRISGMSAARFYIDHFIFKLPNMEPILEAKATAVW 181
Query: 184 LDQNYRPMRIPQEYLTKLAQFVRDHESK 190
L+++YRP+RIPQE+ +K AQFVRDH+SK
Sbjct: 182 LNKSYRPVRIPQEFQSKFAQFVRDHDSK 205
BLAST of Lag0040308 vs. NCBI nr
Match:
XP_038892747.1 (acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like [Benincasa hispida])
HSP 1 Score: 226.9 bits (577), Expect = 1.5e-55
Identity = 118/178 (66.29%), Postives = 146/178 (82.02%), Query Frame = 0
Query: 13 FPHTKASSSLRLRSPMLIKTSISQTVLHLNLKAAR-MNHFQDFELQVRNYELDQFGVVNN 72
FP ++ S+SL LRSP + ++SI+ + +LK + M+ F D EL+VR+YELDQFGVVNN
Sbjct: 31 FPISRPSTSLHLRSPPVTRSSITSS---FDLKPGKGMDGFLDIELKVRDYELDQFGVVNN 90
Query: 73 AVYANYCSNGRQELMERITGVSADAVARSGNALALSDLSFKFLAPLRSGDRFVLKVRISS 132
AVYA+YC +GR EL+E I G+S DAVAR G+ALALS+LS KFLAPLR+GDRFV+KVRIS
Sbjct: 91 AVYASYCQHGRHELLESI-GLSPDAVARDGDALALSELSLKFLAPLRTGDRFVVKVRISG 150
Query: 133 TTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYRPMRIPQEYLTKLAQFVRDHESK 190
T+ R Y DH IFKLPNME ILEAK TAVWL+++YRP+RIPQE+L+K AQFVRDHESK
Sbjct: 151 TSAARFYFDHFIFKLPNMEPILEAKGTAVWLNKSYRPVRIPQEFLSKFAQFVRDHESK 204
BLAST of Lag0040308 vs. NCBI nr
Match:
XP_023541637.1 (acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 226.5 bits (576), Expect = 1.9e-55
Identity = 127/208 (61.06%), Postives = 153/208 (73.56%), Query Frame = 0
Query: 4 LQASFNPIQFP----HTKAS-----------------SSLRLRSPMLIKTSISQTVLHLN 63
LQAS NPIQ P H K + +SLRLRSP + +TSIS +
Sbjct: 2 LQASINPIQSPPPAFHYKTAGLAFPSSLACTISRPSPTSLRLRSPSVTRTSISSS---FQ 61
Query: 64 LKAAR-MNHFQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVARSG 123
LKA + M+ F D EL+VR+YELDQFGVVNNAVYA+YC +GR EL+E I G+S DAVAR G
Sbjct: 62 LKAGKGMDGFLDVELKVRDYELDQFGVVNNAVYASYCQHGRHELLESI-GLSPDAVARDG 121
Query: 124 NALALSDLSFKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVW 183
+ALALS+L+ KFLAPL+SGDRFV+KVRIS + R YIDH IFKLPNME ILEAK TAVW
Sbjct: 122 DALALSELTLKFLAPLKSGDRFVVKVRISGMSAARFYIDHFIFKLPNMEPILEAKGTAVW 181
Query: 184 LDQNYRPMRIPQEYLTKLAQFVRDHESK 190
L+++YRP+RIP E+L+K AQFVRDH+SK
Sbjct: 182 LNKSYRPVRIPHEFLSKFAQFVRDHDSK 205
BLAST of Lag0040308 vs. NCBI nr
Match:
XP_023541635.1 (acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023541636.1 acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 226.5 bits (576), Expect = 1.9e-55
Identity = 128/211 (60.66%), Postives = 153/211 (72.51%), Query Frame = 0
Query: 4 LQASFNPIQFP----HTKAS-----------------SSLRLRSPMLIKTSISQTVLHLN 63
LQAS NPIQ P H K + +SLRLRSP + +TSIS +
Sbjct: 2 LQASINPIQSPPPAFHYKTAGLAFPSSLACTISRPSPTSLRLRSPSVTRTSISSS---FQ 61
Query: 64 LKAA----RMNHFQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVA 123
LKA RM+ F D EL+VR+YELDQFGVVNNAVYA+YC +GR EL+E I G+S DAVA
Sbjct: 62 LKAGKGHYRMDGFLDVELKVRDYELDQFGVVNNAVYASYCQHGRHELLESI-GLSPDAVA 121
Query: 124 RSGNALALSDLSFKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKAT 183
R G+ALALS+L+ KFLAPL+SGDRFV+KVRIS + R YIDH IFKLPNME ILEAK T
Sbjct: 122 RDGDALALSELTLKFLAPLKSGDRFVVKVRISGMSAARFYIDHFIFKLPNMEPILEAKGT 181
Query: 184 AVWLDQNYRPMRIPQEYLTKLAQFVRDHESK 190
AVWL+++YRP+RIP E+L+K AQFVRDH+SK
Sbjct: 182 AVWLNKSYRPVRIPHEFLSKFAQFVRDHDSK 208
BLAST of Lag0040308 vs. NCBI nr
Match:
XP_004135087.1 (acyl-acyl carrier protein thioesterase ATL3, chloroplastic [Cucumis sativus])
HSP 1 Score: 224.9 bits (572), Expect = 5.7e-55
Identity = 119/180 (66.11%), Postives = 146/180 (81.11%), Query Frame = 0
Query: 11 IQFPHTKASSSLRLRSPMLIKTSISQTVLHLNLKAAR-MNHFQDFELQVRNYELDQFGVV 70
+ FP + S+SLRLRS ++SIS + +LKA + M+ F D EL+VR+YELDQFGVV
Sbjct: 29 VVFPIARPSTSLRLRSLPATRSSISSS---FDLKAGKGMDSFLDIELKVRDYELDQFGVV 88
Query: 71 NNAVYANYCSNGRQELMERITGVSADAVARSGNALALSDLSFKFLAPLRSGDRFVLKVRI 130
NNAVYA+YC +GR EL+E I G+S DAVAR G+ALALS+LS KFLAPLRSGD+FV+KVRI
Sbjct: 89 NNAVYASYCQHGRHELLESI-GLSPDAVARDGDALALSELSLKFLAPLRSGDKFVVKVRI 148
Query: 131 SSTTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYRPMRIPQEYLTKLAQFVRDHESK 190
S + R YIDHLIFKLPNME ILEAK TAVWL+++YRP+RIPQE+L+K QFV+DHESK
Sbjct: 149 SGISVARFYIDHLIFKLPNMEPILEAKGTAVWLNKSYRPVRIPQEFLSKFGQFVQDHESK 204
BLAST of Lag0040308 vs. ExPASy Swiss-Prot
Match:
S4TE15 (Acyl-acyl carrier protein thioesterase TE3, chloroplastic OS=Humulus lupulus OX=3486 GN=TE3 PE=2 SV=1)
HSP 1 Score: 196.8 bits (499), Expect = 2.2e-49
Identity = 104/184 (56.52%), Postives = 138/184 (75.00%), Query Frame = 0
Query: 6 ASFNPIQFPHTKASSSLRLRSPMLIKTSISQTVLHLNLKAAR-MNHFQDFELQVRNYELD 65
+S + + FP T+ RLR +L + L +++ + M+ F + EL+VR+YELD
Sbjct: 27 SSASSVAFPVTRLLIPPRLR--VLPNPRRRCSALPFDIRGGKGMSEFYEVELKVRDYELD 86
Query: 66 QFGVVNNAVYANYCSNGRQELMERITGVSADAVARSGNALALSDLSFKFLAPLRSGDRFV 125
Q+GVVNNAVYA+YC +GR EL+E G+S DAVAR+G+ALALS+LS KFLAPLRSGD+FV
Sbjct: 87 QYGVVNNAVYASYCQHGRHELLESF-GLSCDAVARNGDALALSELSLKFLAPLRSGDKFV 146
Query: 126 LKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYRPMRIPQEYLTKLAQFVR 185
+KVR+S ++ R+Y DHLIFKLPN E IL+AK TAVWLD+NYRP+RIP E +KL QF+R
Sbjct: 147 VKVRLSGSSAARLYFDHLIFKLPNQEPILDAKGTAVWLDKNYRPVRIPPEVRSKLVQFLR 206
Query: 186 DHES 189
+ ES
Sbjct: 207 NEES 207
BLAST of Lag0040308 vs. ExPASy Swiss-Prot
Match:
Q8W583 (Acyl-acyl carrier protein thioesterase ATL3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALT3 PE=2 SV=1)
HSP 1 Score: 183.0 bits (463), Expect = 3.2e-45
Identity = 88/141 (62.41%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 48 MNHFQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVARSGNALALS 107
M+ F + EL+VR+YELDQFGVVNNAVYANYC +GR E +E I G++ D VARSG ALA+S
Sbjct: 50 MSEFHEVELKVRDYELDQFGVVNNAVYANYCQHGRHEFLESI-GINCDEVARSGEALAIS 109
Query: 108 DLSFKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYR 167
+L+ KFL+PLRSGD+FV+K RIS T+ RIY DH IFKLPN E ILEAK AVWLD YR
Sbjct: 110 ELTMKFLSPLRSGDKFVVKARISGTSAARIYFDHFIFKLPNQEPILEAKGIAVWLDNKYR 169
Query: 168 PMRIPQEYLTKLAQFVRDHES 189
P+RIP +K F+R ++
Sbjct: 170 PVRIPSSIRSKFVHFLRQDDA 189
BLAST of Lag0040308 vs. ExPASy Swiss-Prot
Match:
F4HX80 (Acyl-acyl carrier protein thioesterase ATL4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALT4 PE=2 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 8.0e-44
Identity = 92/168 (54.76%), Postives = 120/168 (71.43%), Query Frame = 0
Query: 25 RSPMLIKTSISQTV---LHLNLKAAR-MNHFQDFELQVRNYELDQFGVVNNAVYANYCSN 84
R P+++ ++T L+LK + M+ F + EL+VR+YELDQFGVVNNAVYANYC +
Sbjct: 21 RQPVMLPLRSAKTFKPHTFLDLKGGKEMSEFHEVELKVRDYELDQFGVVNNAVYANYCQH 80
Query: 85 GRQELMERITGVSADAVARSGNALALSDLSFKFLAPLRSGDRFVLKVRISSTTTTRIYID 144
G E +E I G++ D VARSG ALA+S+L+ FLAPLRSGD+FV+KV IS T+ RIY D
Sbjct: 81 GMHEFLESI-GINCDEVARSGEALAISELTMNFLAPLRSGDKFVVKVNISRTSAARIYFD 140
Query: 145 HLIFKLPNMESILEAKATAVWLDQNYRPMRIPQEYLTKLAQFVRDHES 189
H I KLPN E ILEAKAT VWLD +RP+RIP +K F+R +++
Sbjct: 141 HSILKLPNQEVILEAKATVVWLDNKHRPVRIPSSIRSKFVHFLRQNDT 187
BLAST of Lag0040308 vs. ExPASy Swiss-Prot
Match:
Q9C7I5 (Acyl-acyl carrier protein thioesterase ATL1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALT1 PE=1 SV=1)
HSP 1 Score: 170.2 bits (430), Expect = 2.2e-41
Identity = 85/139 (61.15%), Postives = 103/139 (74.10%), Query Frame = 0
Query: 48 MNHFQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVARSGNALALS 107
MN + EL+VR+YELDQFGVVNNAVYANYC +G+ E ME I G++ D V+RSG ALA+S
Sbjct: 48 MNGVHEIELKVRDYELDQFGVVNNAVYANYCQHGQHEFMETI-GINCDEVSRSGEALAVS 107
Query: 108 DLSFKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYR 167
+L+ KFLAPLRSG +FV+K RIS T+ TRIY + IFKLPN E ILEAK AVWLD+ YR
Sbjct: 108 ELTIKFLAPLRSGCKFVVKTRISGTSMTRIYFEQFIFKLPNQEPILEAKGMAVWLDKRYR 167
Query: 168 PMRIPQEYLTKLAQFVRDH 187
P+ IP + F R H
Sbjct: 168 PVCIPSYIRSNFGHFQRQH 185
BLAST of Lag0040308 vs. ExPASy Swiss-Prot
Match:
Q9C7I8 (Acyl-acyl carrier protein thioesterase ATL2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ALT2 PE=2 SV=1)
HSP 1 Score: 164.5 bits (415), Expect = 1.2e-39
Identity = 81/136 (59.56%), Postives = 98/136 (72.06%), Query Frame = 0
Query: 51 FQDFELQVRNYELDQFGVVNNAVYANYCSNGRQELMERITGVSADAVARSGNALALSDLS 110
F + EL+VR+YELDQFGVVNNAVYANYC +GR E M+ I G++ + V+RSG ALA+ +L+
Sbjct: 51 FHEIELKVRDYELDQFGVVNNAVYANYCQHGRHEFMDSI-GINCNEVSRSGGALAIPELT 110
Query: 111 FKFLAPLRSGDRFVLKVRISSTTTTRIYIDHLIFKLPNMESILEAKATAVWLDQNYRPMR 170
KFLAPLRSG RFV+K RIS + RIY + IFKLPN E ILEAK TAVWLD YRP R
Sbjct: 111 IKFLAPLRSGCRFVVKTRISGISLVRIYFEQFIFKLPNQEPILEAKGTAVWLDNKYRPTR 170
Query: 171 IPQEYLTKLAQFVRDH 187
+P + F H
Sbjct: 171 VPSHVRSYFGHFQCQH 185
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022968132.1 | 1.1e-55 | 61.54 | acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like [Cucurbita maxim... | [more] |
XP_038892747.1 | 1.5e-55 | 66.29 | acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like [Benincasa hispi... | [more] |
XP_023541637.1 | 1.9e-55 | 61.06 | acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like isoform X2 [Cucu... | [more] |
XP_023541635.1 | 1.9e-55 | 60.66 | acyl-acyl carrier protein thioesterase ATL3, chloroplastic-like isoform X1 [Cucu... | [more] |
XP_004135087.1 | 5.7e-55 | 66.11 | acyl-acyl carrier protein thioesterase ATL3, chloroplastic [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
S4TE15 | 2.2e-49 | 56.52 | Acyl-acyl carrier protein thioesterase TE3, chloroplastic OS=Humulus lupulus OX=... | [more] |
Q8W583 | 3.2e-45 | 62.41 | Acyl-acyl carrier protein thioesterase ATL3, chloroplastic OS=Arabidopsis thalia... | [more] |
F4HX80 | 8.0e-44 | 54.76 | Acyl-acyl carrier protein thioesterase ATL4, chloroplastic OS=Arabidopsis thalia... | [more] |
Q9C7I5 | 2.2e-41 | 61.15 | Acyl-acyl carrier protein thioesterase ATL1, chloroplastic OS=Arabidopsis thalia... | [more] |
Q9C7I8 | 1.2e-39 | 59.56 | Acyl-acyl carrier protein thioesterase ATL2, chloroplastic OS=Arabidopsis thalia... | [more] |