Lag0040137 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040137
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GCK domain-containing protein
Location	chr13: 2425705 .. 2426365 (+)
RNA-Seq Expression	Lag0040137
Synteny	Lag0040137

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGTAAGTGAAGTTGGTTGCTGCTCGTTGGATCTGATTCATGAGGCGGGAAGCATTGTTTTGTTGAGAGTATTTTAGTTTCTAATCGATCTTTTAACAGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG

mRNA sequence

ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG

Coding sequence (CDS)

ATGTCCACTTCGGAGTCGAAACTCCAAGACGCAGAATCAAACGCCGCCGCCACCGCTAAAACCCTGGAGGATCAACAACAATCGGGTTCCCCAATTCACTCTGAGGAAAAATCTTCTGAGGAATCAGGCCAATCAGGAAAGGTTCCCGAGAATGGAGGTGAAGATGAAGGAGGAGAGGATCTAGAAGAGGAAGAAGAGGGGGAGTGTGGATTTTGCTTGTTTATGAAAGGGGGTGGTTGCAGAGATAGCTTCATCAATTGGGAGAAGTGCATCGAGGAGGCGGAGAAGAACAAGGAGGATATTGTGGAGAAGTGCTTTGAAGTGACGGGGGCTCTGAAGAAGTGTATGGAGGCTCATGCGGATTATTACGAGCCGATTCTAAAGGCGGAGAAACTGGCAGAGGAGGAGGCGATTATCGAATTGGAGAAGGAAATAACTCCGAGCGCTACGCAACAAAATACGAACTCCAAAGACCTGGATGCTGGTGGCTGTGGAGGATATCCTCCTCGAACTCTTTGTCATAGTGCACCGAAAGCTGATCATATTAATTTCAGAGTATCATAG

Protein sequence

MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGEDLEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHADYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLDAGGCGGYPPRTLCHSAPKADHINFRVS

Homology

[Close]

BLAST of Lag0040137 vs. NCBI nr
Match: XP_023536143.1 (uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.0 bits (676), Expect = 4.9e-67
Identity = 138/160 (86.25%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60
           MSTSESKLQDAESNAAA  KT EDQQQ G+P HSEEKS EESGQSGK+  +GGEDEGGED
Sbjct: 1   MSTSESKLQDAESNAAAATKTPEDQQQLGAPNHSEEKSPEESGQSGKISGSGGEDEGGED 60

Query: 61  LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           L+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA
Sbjct: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120

Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161
           DYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+S DL+
Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLE 160

[Close]

BLAST of Lag0040137 vs. NCBI nr
Match: XP_038893081.1 (uncharacterized protein LOC120081968 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 8.3e-67
Identity = 141/160 (88.12%), Postives = 149/160 (93.12%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60
           MSTSESKLQDAES AAAT KTLEDQ QSGS   SEEK SEES QSG++PE+GG DE GED
Sbjct: 1   MSTSESKLQDAESKAAAT-KTLEDQPQSGSSNRSEEKYSEESAQSGRIPESGGGDEEGED 60

Query: 61  LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           LEEEEEGECGFCLFMKGGGC+DSFI WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA
Sbjct: 61  LEEEEEGECGFCLFMKGGGCKDSFIEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120

Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161
           DYYEPILKAEK+AEEEAIIELEKEITP+ATQQN+NSKDL+
Sbjct: 121 DYYEPILKAEKMAEEEAIIELEKEITPNATQQNSNSKDLE 159

[Close]

BLAST of Lag0040137 vs. NCBI nr
Match: XP_022997117.1 (uncharacterized protein LOC111492108 [Cucurbita maxima])

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-66
Identity = 139/161 (86.34%), Postives = 150/161 (93.17%), Query Frame = 0


Query: 1   MSTSESKLQDAESN-AAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGE 60
           MSTSESKLQDAESN AAA AKT EDQQQ G+P HSEEKS +ES QSGK+ E+GGEDEGGE
Sbjct: 1   MSTSESKLQDAESNAAAAAAKTPEDQQQLGAPNHSEEKSPQESVQSGKISESGGEDEGGE 60

Query: 61  DLEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120
           DL+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH
Sbjct: 61  DLDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAH 120

Query: 121 ADYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161
           ADYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+SKDL+
Sbjct: 121 ADYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSKDLE 161

[Close]

BLAST of Lag0040137 vs. NCBI nr
Match: KAG7032232.1 (hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 262.3 bits (669), Expect = 3.2e-66
Identity = 136/160 (85.00%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60
           MSTS SK QDAESNAAA AK+ EDQQQ G+P HSEEKS EESGQSGK+ E+GGEDEGGED
Sbjct: 1   MSTSGSKRQDAESNAAAAAKSPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEGGED 60

Query: 61  LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           L+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFE+TGALKKCMEAHA
Sbjct: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCMEAHA 120

Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161
           DYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+S DL+
Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLE 160

[Close]

BLAST of Lag0040137 vs. NCBI nr
Match: KAG6601449.1 (hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 262.3 bits (669), Expect = 3.2e-66
Identity = 136/160 (85.00%), Postives = 148/160 (92.50%), Query Frame = 0


Query: 1   MSTSESKLQDAESNAAATAKTLEDQQQSGSPIHSEEKSSEESGQSGKVPENGGEDEGGED 60
           MSTS SK QDAESNAAA AK+ EDQQQ G+P HSEEKS EESGQSGK+ E+GGEDEGGED
Sbjct: 1   MSTSGSKRQDAESNAAAAAKSPEDQQQLGAPNHSEEKSPEESGQSGKISESGGEDEGGED 60

Query: 61  LEEEEEGECGFCLFMKGGGCRDSFINWEKCIEEAEKNKEDIVEKCFEVTGALKKCMEAHA 120
           L+EEEEGECGFCLFMKGGGCRDSF+ WEKCIEEAEKNKEDIVEKCFE+TGALKKCMEAHA
Sbjct: 61  LDEEEEGECGFCLFMKGGGCRDSFVEWEKCIEEAEKNKEDIVEKCFEITGALKKCMEAHA 120

Query: 121 DYYEPILKAEKLAEEEAIIELEKEITPSATQQNTNSKDLD 161
           DYYEPILKAEK+AE EAIIELEKE TP+ATQQ+T+S DL+
Sbjct: 121 DYYEPILKAEKMAENEAIIELEKESTPNATQQHTDSIDLE 160

The following BLAST results are available for this feature:

BLAST of Lag0040137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536143.1	4.9e-67	86.25	uncharacterized protein LOC111797387 [Cucurbita pepo subsp. pepo]	[more]
XP_038893081.1	8.3e-67	88.13	uncharacterized protein LOC120081968 [Benincasa hispida]	[more]
XP_022997117.1	1.9e-66	86.34	uncharacterized protein LOC111492108 [Cucurbita maxima]	[more]
KAG7032232.1	3.2e-66	85.00	hypothetical protein SDJN02_06275, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601449.1	3.2e-66	85.00	hypothetical protein SDJN03_06682, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0040137 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..28
None	No IPR available	SMART	SM01227	GCK_2	coord: 67..141 e-value: 4.9E-40 score: 149.0
None	No IPR available	GENE3D	1.10.287.2900		coord: 48..127 e-value: 3.3E-7 score: 32.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	PANTHER	PTHR34357	F7A19.14 PROTEIN-RELATED	coord: 4..157
None	No IPR available	PANTHER	PTHR34357:SF2	F7A19.14 PROTEIN-RELATED	coord: 4..157
IPR012891	GCK	PFAM	PF07802	GCK	coord: 67..137 e-value: 1.1E-35 score: 121.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040137.1	Lag0040137.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
molecular_function	GO:0003746	translation elongation factor activity