Lag0040099 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040099
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription factor PRE6-like
Location	chr13: 2148698 .. 2149147 (-)
RNA-Seq Expression	Lag0040099
Synteny	Lag0040099

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATTTATCTCTTTTCCCTTCTTTTTCTTCTTTCAATTTCTACATTTTTTTCATTTTTTATTTCCTTTTAATTCAATTTTTTTACAACCAAATGTCAAGTGTATAAATAATGTAGGGAAATTTGATTATTAAAATCTCATAATATATGCCTATGGTGTTCAGGTATCAGCTTCAAAGGTTCTACAAGAGACTTGCAACTACATCAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

mRNA sequence

ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTACAAGAGACTTGCAACTACATCAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Coding sequence (CDS)

ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTACAAGAGACTTGCAACTACATCAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Protein sequence

MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM

Homology

[Close]

BLAST of Lag0040099 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 8.3e-39
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lag0040099 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-37
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lag0040099 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 4.6e-37
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lag0040099 vs. NCBI nr
Match: XP_008446331.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lag0040099 vs. NCBI nr
Match: XP_022968308.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-27
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 2  STRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-25
Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-25
Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 5  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 0


Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

The following BLAST results are available for this feature:

BLAST of Lag0040099 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893351.1	8.3e-39	98.95	transcription factor PRE6-like [Benincasa hispida]	[more]
XP_004135185.1	2.7e-37	96.84	transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa...	[more]
XP_022151230.1	4.6e-37	95.79	transcription factor PRE6-like [Momordica charantia]	[more]
XP_008446331.1	6.0e-37	95.79	PREDICTED: transcription factor PRE6-like [Cucumis melo]	[more]
XP_022968308.1	2.5e-35	92.63	transcription factor PRE6-like [Cucurbita maxima]	[more]

BLAST of Lag0040099 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	1.5e-27	78.49	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	7.1e-25	70.53	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	7.1e-25	70.53	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9LXG5	1.6e-24	68.89	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q9CA64	7.9e-24	69.15	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 52..79
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..95
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 18..79 e-value: 5.30633E-19 score: 71.5655
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..63 e-value: 3.4E-7 score: 30.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 7..62 score: 10.213443
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 21..89 e-value: 2.3E-9 score: 39.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..82
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040099.1	Lag0040099.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity