Lag0040099 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0040099
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiontranscription factor PRE6-like
Locationchr13: 2148698 .. 2149147 (-)
RNA-Seq ExpressionLag0040099
SyntenyLag0040099
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATTTATCTCTTTTCCCTTCTTTTTCTTCTTTCAATTTCTACATTTTTTTCATTTTTTATTTCCTTTTAATTCAATTTTTTTACAACCAAATGTCAAGTGTATAAATAATGTAGGGAAATTTGATTATTAAAATCTCATAATATATGCCTATGGTGTTCAGGTATCAGCTTCAAAGGTTCTACAAGAGACTTGCAACTACATCAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

mRNA sequence

ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTACAAGAGACTTGCAACTACATCAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Coding sequence (CDS)

ATGTCGACCAGAAGCTCGCGTTCTAGACGCTCGGGTGTTCCTTCTAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGCAATGGCCGTTCCTCCTCCAGGGTATCAGCTTCAAAGGTTCTACAAGAGACTTGCAACTACATCAGAAGCTTACAAAGAGAGGTGGATGACTTAAGCGACCGATTATCAGAGCTATTGGCGTCAACAGACCCTGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTACTTATGTAA

Protein sequence

MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Homology
BLAST of Lag0040099 vs. NCBI nr
Match: XP_038893351.1 (transcription factor PRE6-like [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 8.3e-39
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

BLAST of Lag0040099 vs. NCBI nr
Match: XP_004135185.1 (transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa_009290 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.7e-37
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 95

BLAST of Lag0040099 vs. NCBI nr
Match: XP_022151230.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 164.5 bits (415), Expect = 4.6e-37
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS VPSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLS+RLSELLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

BLAST of Lag0040099 vs. NCBI nr
Match: XP_008446331.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS RSSRSRRSGV SRNISD+QIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR
Sbjct: 1  MSGRSSRSRRSGVGSRNISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREVDDLSDRLS+LLASTDPESAQAAIIRSLLM
Sbjct: 61 SLQREVDDLSDRLSQLLASTDPESAQAAIIRSLLM 95

BLAST of Lag0040099 vs. NCBI nr
Match: XP_022968308.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35
Identity = 88/95 (92.63%), Postives = 90/95 (94.74%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+RSSRSRRS VPS NISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIR
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SLQREV DLSDRLSELL STDPESAQAAIIRSLLM
Sbjct: 61 SLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-27
Identity = 73/93 (78.49%), Postives = 80/93 (86.02%), Query Frame = 0

Query: 2  STRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRS 61
          S RSSRSR+SG  S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+
Sbjct: 3  SRRSSRSRQSG--SSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIRN 62

Query: 62 LQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          L REVDDLSDRLSELLASTD  SA+AAIIRSLL
Sbjct: 63 LHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-25
Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-25
Identity = 67/95 (70.53%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS+R SRSR+SG  S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIR
Sbjct: 1  MSSRRSRSRQSG--SSRITDEQISDLVSKLQDLLPEARL-RSNDRVPSSRVLQETCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLLM 96
          SL +EVDDLS+RLSELLA++D  SAQAAIIRSLLM
Sbjct: 61 SLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 0

Query: 5  SSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQR 64
          SSR  R    S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +
Sbjct: 3  SSRRSRQASSSSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNK 62

Query: 65 EVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          E DDLSDRL++LL S DP S QAA+IRSL+
Sbjct: 63 EADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

BLAST of Lag0040099 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 7.9e-24
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 0

Query: 1  MSTRSSRSRRSGVPSRNISDDQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIR 60
          MS R SRSR+S   SR IS+DQI DLI KLQQL+PE+R+ R S +VSA++VLQ+TCNYIR
Sbjct: 1  MSGRRSRSRQSSGTSR-ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 SLQREVDDLSDRLSELLASTDPESAQAAIIRSLL 95
          +L REVDDLS+RLSELLA++D  +AQAA+IRSLL
Sbjct: 61 NLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038893351.18.3e-3998.95transcription factor PRE6-like [Benincasa hispida][more]
XP_004135185.12.7e-3796.84transcription factor PRE6 [Cucumis sativus] >KGN51900.1 hypothetical protein Csa... [more]
XP_022151230.14.6e-3795.79transcription factor PRE6-like [Momordica charantia][more]
XP_008446331.16.0e-3795.79PREDICTED: transcription factor PRE6-like [Cucumis melo][more]
XP_022968308.12.5e-3592.63transcription factor PRE6-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q8GW321.5e-2778.49Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1[more]
B8APB57.1e-2570.53Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV... [more]
Q0DUR27.1e-2570.53Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ... [more]
Q9LXG51.6e-2468.89Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1[more]
Q9CA647.9e-2469.15Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..79
NoneNo IPR availablePANTHERPTHR46446:SF11TRANSCRIPTION FACTOR PRE6coord: 1..95
NoneNo IPR availableCDDcd11442bHLH_AtPRE_likecoord: 18..79
e-value: 5.30633E-19
score: 71.5655
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 21..63
e-value: 3.4E-7
score: 30.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 7..62
score: 10.213443
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 21..89
e-value: 2.3E-9
score: 39.1
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 21..82
IPR044293Transcription factor PREPANTHERPTHR46446TRANSCRIPTION FACTOR PREcoord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0040099.1Lag0040099.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0040008 regulation of growth
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity