Lag0040091 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040091
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	polyvinylalcohol dehydrogenase-like
Location	chr13: 2089246 .. 2089638 (-)
RNA-Seq Expression	Lag0040091
Synteny	Lag0040091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGTTGAAAAGGTTGAAGCCGAAGTATTTGTTCATATTCCGGCAGTTGGCCCGACCTGTAGGCAAAGAAGGAGGCCGCACATAGGGCGGAACGACCGGAGGAAGAAGAATGTACATGTACATCGTCAACAGCGAACGAGCCCTTCACCCTCGCACCTTCTAACCACCCAACAACGGCGGGCGGCTGGGCGGCGCTGGACGCCAATACCGGTCGAATCCTCTGGTCCACGGCGAACCCCAGCAACGAAACAGCTTACGTGCCTCTGTCGGTGCCCAGCGGCATCCTTTTCGCCGGCCAAATGGTCGGATTTACGCCATGGACATCGAAAATGGAGAAATTATCTGGTCCTACAACACCAGAGCTACTGTTTATGGAGGAATTTCTGTGA

mRNA sequence

ATGGCAAAGAAGGAGGCCGCACATAGGGCGGAACGACCGGAGGAAGAAGAATGTACATGTACATCGTCAACAGCGAACGAGCCCTTCACCCTCGCACCTTCTAACCACCCAACAACGGCGGGCGGCTGGGCGGCGCTGGACGCCAATACCGGTCGAATCCTCTGGTCCACGGCGAACCCCAGCAACGAAACAGCTTACGTGCCTCTGTCGGTGCCCAGCGGCATCCTTTTCGCCGGCCAAATGGTCGGATTTACGCCATGGACATCGAAAATGGAGAAATTATCTGGTCCTACAACACCAGAGCTACTGTTTATGGAGGAATTTCTGTGA

Coding sequence (CDS)

ATGGCAAAGAAGGAGGCCGCACATAGGGCGGAACGACCGGAGGAAGAAGAATGTACATGTACATCGTCAACAGCGAACGAGCCCTTCACCCTCGCACCTTCTAACCACCCAACAACGGCGGGCGGCTGGGCGGCGCTGGACGCCAATACCGGTCGAATCCTCTGGTCCACGGCGAACCCCAGCAACGAAACAGCTTACGTGCCTCTGTCGGTGCCCAGCGGCATCCTTTTCGCCGGCCAAATGGTCGGATTTACGCCATGGACATCGAAAATGGAGAAATTATCTGGTCCTACAACACCAGAGCTACTGTTTATGGAGGAATTTCTGTGA

Protein sequence

MAKKEAAHRAERPEEEECTCTSSTANEPFTLAPSNHPTTAGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFTPWTSKMEKLSGPTTPELLFMEEFL

Homology

[Close]

BLAST of Lag0040091 vs. NCBI nr
Match: XP_042049086.1 (polyvinylalcohol dehydrogenase-like [Salvia splendens])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 26  NEPFTLAPSNHPTTAGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFT 85
           NEPFTL PS   TTAGGW A+DANTG+ILW+TANPSNETA+ P+++ +G+LFAG +    
Sbjct: 407 NEPFTLKPSTRNTTAGGWVAMDANTGKILWTTANPSNETAHGPVTIVNGVLFAGSVAPTG 466

Query: 86  P 87
           P
Sbjct: 467 P 467

[Close]

BLAST of Lag0040091 vs. NCBI nr
Match: KAG6429682.1 (hypothetical protein SASPL_107734 [Salvia splendens])

HSP 1 Score: 88.6 bits (218), Expect = 3.7e-14
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 26  NEPFTLAPSNHPTTAGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFT 85
           NEPFTL PS   TTAGGW A+DANTG+ILW+TANPSNETA+ P+++ +G+LFAG +    
Sbjct: 407 NEPFTLKPSTRNTTAGGWVAMDANTGKILWTTANPSNETAHGPVTIVNGVLFAGSVAPTG 466

Query: 86  P 87
           P
Sbjct: 467 P 467

[Close]

BLAST of Lag0040091 vs. NCBI nr
Match: KAG8366311.1 (hypothetical protein BUALT_Bualt17G0066200 [Buddleja alternifolia])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 26  NEPFTLAPSNHPTTAGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQMVGFT 85
           N PFTL PSN  TTAGGW A+DANTGRI+W+TANPSNETA+ P+++ +G+LF G +    
Sbjct: 408 NLPFTLKPSNRTTTAGGWVAMDANTGRIIWTTANPSNETAHGPVTIVNGVLFVGSVAPSG 467

Query: 86  P 87
           P
Sbjct: 468 P 468

[Close]

BLAST of Lag0040091 vs. NCBI nr
Match: XP_019265633.1 (PREDICTED: uncharacterized protein LOC109243175 [Nicotiana attenuata])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 28  PFTLAPSNHPTTAGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQM 82
           PFTLAPSN  TTAGGW ALDANTG+ILW+TA+PSNETA+ P+++ +G+LFAG +
Sbjct: 397 PFTLAPSNQTTTAGGWVALDANTGQILWTTADPSNETAHGPVTIVNGLLFAGSV 450

[Close]

BLAST of Lag0040091 vs. NCBI nr
Match: OIT35578.1 (hypothetical protein A4A49_02656 [Nicotiana attenuata])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 28  PFTLAPSNHPTTAGGWAALDANTGRILWSTANPSNETAYVPLSVPSGILFAGQM 82
           PFTLAPSN  TTAGGW ALDANTG+ILW+TA+PSNETA+ P+++ +G+LFAG +
Sbjct: 431 PFTLAPSNQTTTAGGWVALDANTGQILWTTADPSNETAHGPVTIVNGLLFAGSV 484

The following BLAST results are available for this feature:

BLAST of Lag0040091 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042049086.1	3.7e-14	63.93	polyvinylalcohol dehydrogenase-like [Salvia splendens]	[more]
KAG6429682.1	3.7e-14	63.93	hypothetical protein SASPL_107734 [Salvia splendens]	[more]
KAG8366311.1	1.1e-13	62.30	hypothetical protein BUALT_Bualt17G0066200 [Buddleja alternifolia]	[more]
XP_019265633.1	1.1e-13	70.37	PREDICTED: uncharacterized protein LOC109243175 [Nicotiana attenuata]	[more]
OIT35578.1	1.1e-13	70.37	hypothetical protein A4A49_02656 [Nicotiana attenuata]	[more]

BLAST of Lag0040091 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR32303:SF18	POLYVINYLALCOHOL DEHYDROGENASE-LIKE	coord: 21..82
None	No IPR available	PANTHER	PTHR32303	QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C)	coord: 21..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040091.1	Lag0040091.1	mRNA