Lag0040031 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040031
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like
Location	chr13: 1672599 .. 1673273 (-)
RNA-Seq Expression	Lag0040031
Synteny	Lag0040031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGGAGTTGGAGCATAGCTCCTGCTTTCCATCTCCCCCCTTCTCTCTTTTCGCTTCGTAAACCCACCATTCCCTTATGCTTCTTCTCCAATCCTTCATCCACTACTCTCCAATCCAGACGCCTCCACCTTCCACATTCACCGCCCTTTTCCTTCCCAACCCACATTTCCAGCGCCGCCGAGTACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCCGTAAGTTCCTCCCTTTCCAAATCTTCTCAAACTGTGTACATATCGGATTCTATCTCCTGATTTGCATTTCGTTTCTGTCCAGGAGACCGAGAAGTTCAGGGCTCATCTCCTTAACAACCTCTCTAAGAAAGACATTTACGGGGACTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGGTATTTCTACTTCTCCATTGGCCTCACTCACTCTGTTGTTTTCTTTGCGTTTTCCCATGGCCTTGGTTCTTCTTCAGATATTCAATACCTTTATGCACACTGAGTATGGTGGCCCTGGCACTTTGTTGGTCATACCTTTCATCGACATGTCTGATACAATCAACGAACGAGGCTTACCTGGAGGACCTCAAGCTGCCCGTGCTGCTGTCAAATGGGCTCAAGATCATGTTGATAAAGACTGGAACGAGTGGACTGGTGATGATGGCACTTAA

mRNA sequence

ATGGCATGGAGTTGGAGCATAGCTCCTGCTTTCCATCTCCCCCCTTCTCTCTTTTCGCTTCGTAAACCCACCATTCCCTTATGCTTCTTCTCCAATCCTTCATCCACTACTCTCCAATCCAGACGCCTCCACCTTCCACATTCACCGCCCTTTTCCTTCCCAACCCACATTTCCAGCGCCGCCGAGTACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCCGAGACCGAGAAGTTCAGGGCTCATCTCCTTAACAACCTCTCTAAGAAAGACATTTACGGGGACTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGATATTCAATACCTTTATGCACACTGAGTATGGTGGCCCTGGCACTTTGTTGGTCATACCTTTCATCGACATGTCTGATACAATCAACGAACGAGGCTTACCTGGAGGACCTCAAGCTGCCCGTGCTGCTGTCAAATGGGCTCAAGATCATGTTGATAAAGACTGGAACGAGTGGACTGGTGATGATGGCACTTAA

Coding sequence (CDS)

ATGGCATGGAGTTGGAGCATAGCTCCTGCTTTCCATCTCCCCCCTTCTCTCTTTTCGCTTCGTAAACCCACCATTCCCTTATGCTTCTTCTCCAATCCTTCATCCACTACTCTCCAATCCAGACGCCTCCACCTTCCACATTCACCGCCCTTTTCCTTCCCAACCCACATTTCCAGCGCCGCCGAGTACAAATTTCCCGACCCAATTCCCGAATTCGCCGTCGCCGAGACCGAGAAGTTCAGGGCTCATCTCCTTAACAACCTCTCTAAGAAAGACATTTACGGGGACTCCGTTCAAGAGGTCGTCGGAATATGCACTGAGATATTCAATACCTTTATGCACACTGAGTATGGTGGCCCTGGCACTTTGTTGGTCATACCTTTCATCGACATGTCTGATACAATCAACGAACGAGGCTTACCTGGAGGACCTCAAGCTGCCCGTGCTGCTGTCAAATGGGCTCAAGATCATGTTGATAAAGACTGGAACGAGTGGACTGGTGATGATGGCACTTAA

Protein sequence

MAWSWSIAPAFHLPPSLFSLRKPTIPLCFFSNPSSTTLQSRRLHLPHSPPFSFPTHISSAAEYKFPDPIPEFAVAETEKFRAHLLNNLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGGPGTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT

Homology

[Close]

BLAST of Lag0040031 vs. NCBI nr
Match: XP_022997795.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima] >XP_022997873.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 136/171 (79.53%), Postives = 143/171 (83.63%), Query Frame = 0


Query: 4   SWSIAPAFHLPPSLFSLRKPTIPLCFFSNPSST---TLQSRRLHLPHSPPFSFPTHISSA 63
           +W+  PAFHL P LF+L KPT P CFFSNPSS    T  S  L LP  P  SF   I  A
Sbjct: 2   AWTTVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTRLSPTLRLPFQPSSSFGNQICRA 61

Query: 64  AEYKFPDPIPEFAVAETEKFRAHLLNNLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGGP 123
           AEYKFPDPIPEFA+AETEKFRAHLL  LSKKDIYGDSVQEVVG+CTEIFNTFMHTEYGGP
Sbjct: 62  AEYKFPDPIPEFAIAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTEYGGP 121

Query: 124 GTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT 172
           GTLLV+PFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 122 GTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]

BLAST of Lag0040031 vs. NCBI nr
Match: XP_023549642.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549649.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549656.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023549666.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 136/171 (79.53%), Postives = 142/171 (83.04%), Query Frame = 0


Query: 4   SWSIAPAFHLPPSLFSLRKPTIPLCFFSNPSST---TLQSRRLHLPHSPPFSFPTHISSA 63
           +W+  PAFHL P LF+L KP  P CFFSNPSS    T  S  L LP  P  SF   I  A
Sbjct: 2   AWTTVPAFHLLPPLFALHKPNSPPCFFSNPSSALQHTRLSPTLRLPFQPSSSFGNQICRA 61

Query: 64  AEYKFPDPIPEFAVAETEKFRAHLLNNLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGGP 123
           AEYKFPDPIPEFAVAETEKFRAHLL  LSKKDIYGDSVQEVVG+CTEIFNTFMHTEYGGP
Sbjct: 62  AEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTEYGGP 121

Query: 124 GTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT 172
           GTLLV+PFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 122 GTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 172

[Close]

BLAST of Lag0040031 vs. NCBI nr
Match: KAG6601379.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 279.6 bits (714), Expect = 1.8e-71
Identity = 138/173 (79.77%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 4   SWSIAPAFHLPPSLFSLRKPTIPLCFFSNPSST---TLQSRRLHLPHSP--PFSFPTHIS 63
           +W+  PAFHL PSLF+L KPT P CFFSNPSS    T  S  L LP  P    SF   I 
Sbjct: 105 AWTTVPAFHLLPSLFALHKPTAPPCFFSNPSSALQHTRLSPTLRLPFQPSSSSSFGNQIC 164

Query: 64  SAAEYKFPDPIPEFAVAETEKFRAHLLNNLSKKDIYGDSVQEVVGICTEIFNTFMHTEYG 123
            AAEYKFPDPIPEFAVAETEKFRAHLL  LSKKDIYGDSVQEVVG+CTEIFNTFMHTEYG
Sbjct: 165 RAAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTEYG 224

Query: 124 GPGTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT 172
           GPGTLLV+PFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 225 GPGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 277

[Close]

BLAST of Lag0040031 vs. NCBI nr
Match: XP_022956596.1 (protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >XP_022956597.1 protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >KAG7032158.1 Protein PLASTID REDOX INSENSITIVE 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.1 bits (710), Expect = 5.1e-71
Identity = 137/172 (79.65%), Postives = 143/172 (83.14%), Query Frame = 0


Query: 4   SWSIAPAFHLPPSLFSLRKPTIPLCFFSNPSST---TLQSRRLHLPHSP-PFSFPTHISS 63
           +W+  PAFHL P LF+L KPT P CFFSNPSS    T  S  L LP  P   SF   I  
Sbjct: 2   AWTTVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTRLSPTLRLPFQPSSSSFGNQICR 61

Query: 64  AAEYKFPDPIPEFAVAETEKFRAHLLNNLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGG 123
           AAEYKFPDPIPEFAVAETEKFRAHLL  LSKKDIYGDSVQEVVG+CTEIFNTFMHTEYGG
Sbjct: 62  AAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTEYGG 121

Query: 124 PGTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT 172
           PGTLLV+PFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 122 PGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 173

[Close]

BLAST of Lag0040031 vs. NCBI nr
Match: KAG6601374.1 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.1 bits (710), Expect = 5.1e-71
Identity = 137/172 (79.65%), Postives = 143/172 (83.14%), Query Frame = 0


Query: 4   SWSIAPAFHLPPSLFSLRKPTIPLCFFSNPSST---TLQSRRLHLPHSP-PFSFPTHISS 63
           +W+  PAFHL P LF+L KPT P CFFSNPSS    T  S  L LP  P   SF   I  
Sbjct: 115 AWTTVPAFHLLPPLFALHKPTAPPCFFSNPSSALQHTRLSPTLRLPFQPSSSSFGNQICR 174

Query: 64  AAEYKFPDPIPEFAVAETEKFRAHLLNNLSKKDIYGDSVQEVVGICTEIFNTFMHTEYGG 123
           AAEYKFPDPIPEFAVAETEKFRAHLL  LSKKDIYGDSVQEVVG+CTEIFNTFMHTEYGG
Sbjct: 175 AAEYKFPDPIPEFAVAETEKFRAHLLTKLSKKDIYGDSVQEVVGVCTEIFNTFMHTEYGG 234

Query: 124 PGTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDDGT 172
           PGTLLV+PFIDMSDTINERGLPGGPQAARAAVKWAQ+HVDKDWN WTGDDGT
Sbjct: 235 PGTLLVLPFIDMSDTINERGLPGGPQAARAAVKWAQEHVDKDWNLWTGDDGT 286

[Close]

BLAST of Lag0040031 vs. ExPASy Swiss-Prot
Match: Q9XIK0 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRIN2 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.7e-51
Identity = 89/113 (78.76%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 57  ISSAAEYKFPDPIPEFAVAETEKFRAHLLNNLSKKDIYGDSVQEVVGICTEIFNTFMHTE 116
           +  AAEYKFPDPIPEFA AETEKFR H+LN LSK+D++ DSV E+VG+CTEIF TF+ +E
Sbjct: 67  VCRAAEYKFPDPIPEFAEAETEKFRDHMLNKLSKRDLFEDSVDEIVGVCTEIFETFLRSE 126

Query: 117 YGGPGTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGDD 170
           YGGPGTLLVIPFIDM+DT+NER LPGGPQAARAA+KWAQDHVDKDW EWTG D
Sbjct: 127 YGGPGTLLVIPFIDMADTLNERELPGGPQAARAAIKWAQDHVDKDWKEWTGTD 179

[Close]

BLAST of Lag0040031 vs. ExPASy Swiss-Prot
Match: Q6H612 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.6e-37
Identity = 81/174 (46.55%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 3   WSWSIAPAFHLPPSLFSLRKPTIPLCFFSNPSSTTLQSR---RLHLPHSPPFSFPTHISS 62
           W+ ++APA        +L  P + L   S+PSS+ L+     RL      P  F    + 
Sbjct: 6   WAAAVAPA--------TLNPPLLTLSASSSPSSSRLRRSVLGRLRSRAPRPADFVCRRAK 65

Query: 63  AA---EYKFPDPIPEFAVAETEKFRAHLLNNLSKK--DIYGDSVQEVVGICTEIFNTFMH 122
            A   +YKFPDPIPEFA  ET KF+ H++  L +K  D +G+ V+E+V +CTEI  TF+ 
Sbjct: 66  NAAYDDYKFPDPIPEFAAQETSKFKEHMMWRLEQKKDDYFGEHVEEIVDVCTEILGTFLE 125

Query: 123 TEYGGPGTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGD 169
            +Y GPGTLLV PF+DM   I ERGLPG PQAARAA+ WA+ ++DKDW  WTG+
Sbjct: 126 HDYCGPGTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNIDKDWKAWTGE 171

[Close]

BLAST of Lag0040031 vs. ExPASy Swiss-Prot
Match: B6UFC7 (Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-35
Identity = 67/109 (61.47%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 62  EYKFPDPIPEFAVAETEKFRAHLLNNL--SKKDIYGDSVQEVVGICTEIFNTFMHTEYGG 121
           +YKFPDPIPEFA  ET KFR H+   L   K+D +GD V+E+V +CTEI  TF+  +Y G
Sbjct: 64  DYKFPDPIPEFAEQETSKFREHMAWRLEQKKEDYFGDHVEEIVDVCTEIMGTFLENDYRG 123

Query: 122 PGTLLVIPFIDMSDTINERGLPGGPQAARAAVKWAQDHVDKDWNEWTGD 169
           PGTLLV PF+DM   I ERGLPG PQAARAA+ WA+ +VDKDW  WTG+
Sbjct: 124 PGTLLVHPFLDMKGEIKERGLPGAPQAARAAIAWAEKNVDKDWKAWTGE 172

The following BLAST results are available for this feature:

BLAST of Lag0040031 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997795.1	2.7e-72	79.53	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita maxima] >XP_0...	[more]
XP_023549642.1	1.0e-71	79.53	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita pepo subsp. p...	[more]
KAG6601379.1	1.8e-71	79.77	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe...	[more]
XP_022956596.1	5.1e-71	79.65	protein PLASTID REDOX INSENSITIVE 2, chloroplastic-like [Cucurbita moschata] >XP...	[more]
KAG6601374.1	5.1e-71	79.65	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic, partial [Cucurbita argyrospe...	[more]

BLAST of Lag0040031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIK0	4.7e-51	78.76	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
Q6H612	8.6e-37	46.55	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Oryza sativa subsp. japoni...	[more]
B6UFC7	1.2e-35	61.47	Protein PLASTID REDOX INSENSITIVE 2, chloroplastic OS=Zea mays OX=4577 GN=PRIN2 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35987:SF2	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC	coord: 38..169
IPR039349	Protein PLASTID REDOX INSENSITIVE 2	PANTHER	PTHR35987	PROTEIN PLASTID REDOX INSENSITIVE 2, CHLOROPLASTIC-RELATED	coord: 38..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040031.1	Lag0040031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0009536	plastid