Lag0040024 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0040024
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AD domain-containing protein
Location	chr13: 1629156 .. 1631877 (+)
RNA-Seq Expression	Lag0040024
Synteny	Lag0040024

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGCTTTCTAACTTCGTTTAATCATTATCACTGTCTCTGCTTCTTGAATTCCTTGACTTCTTTTTCTGTCTTCTCTTTATTTTGCGGTTGCCACAGGAGGGTTCGAAGCCAGGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGTACGTCAACAACCCATTCAAAATTCTTGTGGGTTTTCGTTGCTTAGTTGAGATTTTTGCAGTTTCTGATTCAATTATGTGTTTTCATTCTCTTTTGGTCATTGGGTCGTTCTGAATTTTGCAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGTAAGTTTAGTTTTATTTTGTTCGTTGGAATATTTGGAAAGTCTATTTCGATTGTACTTAAAACATTTACGAAGATTTCATTCATACTATTTTTAGTCCATGCCCACGCATTTTTGGTAATATGTGGCAATTTTATCAGTTTTCTTTGCTTATGCAATTGTTCCACTAATCCTGATCATTTCTATATATTGATTTCGTATTAAGAGAAGCCATGAATGCTTGTGTCTTTATCATCTATATGCCTTTTTATGTGTGCTGGGTTGGTGAACTTGTTTACGGATCATTACAGTGCATTCTCCCTCTTACGCAAGTTATTCTCTAGAAATTCTTTAGAAGCTTTGCTACATTGGAAGATAGTTTAATTTACCGGGATGAGGAAATTGAACCATAGACCAATATTTTGGATTTGAGGGGAGTACAAAAGCCATATCACCTTCATGAATCTGTGACATTTTTGGAAATTGAAGAGGTCTTTATGATAACTAGGAAGTCCATGTAATGGTCTAGGTCTGCTTGATTTTCAACATTCACAACACACGGTTTAATGGTTTTGATTAGTTACTTATCTACTAAACACCATGATATGTTATTGTGTTGTGCCATATGTTTCCTATAGTGTTGGCAACGGACGAGATGCAATAATTCATCCTCTTAGGTGCAATGGGATATGAACATTGTTGTCCAGTTTGTTCAGCATAGTTTTTTTTTTTTACTCTGAACATTTACCTCAATGATGCTGAGATAATGGAAAAAATTGGGTAATTTAAACTTAATGATTTGGCTTTACTATAATTAAGACCTTGAGCTACTGTACCATAGTTCTAATTCTTGTGCTATCAGCCAAGATTGTTGGCAATCTTAGAAATCATTTTATAAGTTTTAACAAGTCTTTGGATGATATCACATTCAGACTTTACCTTTCCCTTAAACCATGTATGGTACTTGCATCTTTTGGTTTCTATGATGTTGATCTTTTTACGAACTTTTGAAAGTCACGAAAGTTGTTTAGTAGCACCACTCAATTAGTTTTACATATAATTGCTTTCCAACAGTTATGGAACTTATTTATTTTTGCTGTTCCCAATGCAGAAGTCATAGTTTTTATTGCTGTGGTGCAAGTTCCTCGATATGAAGTTGGAACTTATGTCAGCTCCATTCTTTATTTGGTTTTTTGTAGAACCAGGACGTGTTAGTTTATCTTAAGAACTTATTTTTTTCAGTACTGACTGGTTTTGGTAACGTATATGCTTTACATACTTTTGAGCCTGAGAAGTAGTAATCAAGAACTTTTTCTTCAAGAGAATATTGTTCATTCTTATGTAAATGATGTCAGTGACTTGGTTAGAATGATGAATTTTACTGTTAACGTTGCTAAACCAAATGCATCTATCTTTTTGGCTTCTGTTATGGAGTCTGAAAATTGGAGAATGGTTTGGGCACCTAGTGGAGTTGTAAACCCAAGTATGCTCATCTGATGATCTGATTTTATGAGGCATGGACATACAGAATAACAGATGCAACAGAAATGAGATACAAAATCATCACCATAGGCGTTTATCTTCTCGAACTTTTTATTGCATGGATCATTTTCTCTTGCTGCTTCAGCTGTATAATTTTCCTACTTTGTAGTCTCTGCATTATTGTTTTGATATTCTGACTAAGGTGATTGGTGCAATCCTAGGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGAGCGGGTAAAGAAAGTGGTAAGAATCTTTTGGTAATGCTGTTTGATTCATACTGAAAAACTTAACAATGGATATAACTAGCTTTTCACTTCTTTCTTTGCAATGCCTTGCACAAACCTCTTTACATATCCATTTTTTTTTTCTTAAAGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGCGTTGGTCAGTGATGGTTATTCATCCTTATCCTTCTTTACTGGGTGACAGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGGGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTGTTTAA

mRNA sequence

ATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGAGGGTTCGAAGCCAGGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGAGCGGGTAAAGAAAGTGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGGGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTGTTTAA

Coding sequence (CDS)

ATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGAGGGTTCGAAGCCAGGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGAGCGGGTAAAGAAAGTGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGGGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTGTTTAA

Protein sequence

MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKVAMACTEPFANWGEGIISFRGISVSAITKGFSV

Homology

[Close]

BLAST of Lag0040024 vs. NCBI nr
Match: KGN52415.2 (hypothetical protein Csa_008581 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 4.1e-74
Identity = 148/163 (90.80%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANY 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANY
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPRRNIRLLKANY 60

Query: 61  IKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120
           IKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS
Sbjct: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120

Query: 121 KTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           KTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Sbjct: 121 KTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKV 163

[Close]

BLAST of Lag0040024 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 9.1e-74
Identity = 148/166 (89.16%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQG              QEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKV 166

[Close]

BLAST of Lag0040024 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 9.1e-74
Identity = 148/166 (89.16%), Postives = 151/166 (90.96%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQG--------------QEGSKPGPRRNIRLLK 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQG              QEGSKPGPRRNIRLLK
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGSKPGPRRNIRLLK 60

Query: 61  ANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120
           ANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD
Sbjct: 61  ANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFD 120

Query: 121 ALSKTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           ALSKTLPVRWDKTVIVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Sbjct: 121 ALSKTLPVRWDKTVIVVMNEVRVSSPYLPESVSGGTPAANERVKKV 166

[Close]

BLAST of Lag0040024 vs. NCBI nr
Match: TYK15583.1 (protein LSM12-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 146/163 (89.57%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQ-----------EGSKPGPRRNIRLLKANY 60
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQ           EGSKPGPRRNIRLLKANY
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILEGSKPGPRRNIRLLKANY 60

Query: 61  IKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120
           IKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS
Sbjct: 61  IKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 120

Query: 121 KTLPVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           KTLPVRWDKTVIVVMNEVRV++PYLP+SV+GGTPAANERVKKV
Sbjct: 121 KTLPVRWDKTVIVVMNEVRVNSPYLPDSVSGGTPAANERVKKV 163

[Close]

BLAST of Lag0040024 vs. NCBI nr
Match: KAG6601368.1 (Protein LSM12-like A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 145/152 (95.39%), Postives = 148/152 (97.37%), Query Frame = 0


Query: 1   MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRRNIRLLKANYIKEFSFLGHGE 60
           MALD SGNGDDF+VGSFFSIKTTLGDEFQ QEGSKPGPRRNIRLLKANYIKEFSFLGHGE
Sbjct: 1   MALD-SGNGDDFSVGSFFSIKTTLGDEFQAQEGSKPGPRRNIRLLKANYIKEFSFLGHGE 60

Query: 61  DPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKTLPVRWDKTV 120
           DPLDLK CYLDLNTLRAREELAIRQAE EAERIGVGVTSEAQSIFDALSKTLPVRWDKTV
Sbjct: 61  DPLDLKNCYLDLNTLRAREELAIRQAEIEAERIGVGVTSEAQSIFDALSKTLPVRWDKTV 120

Query: 121 IVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           IVVMNEVRVS+PYLPESV+GGTPAANERVKKV
Sbjct: 121 IVVMNEVRVSSPYLPESVSGGTPAANERVKKV 151

[Close]

BLAST of Lag0040024 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-07
Identity = 45/164 (27.44%), Postives = 74/164 (45.12%), Query Frame = 0


Query: 7   GNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYI 66
           G G+ F+VGS  S  T LG   QG+  +   P +                ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYV 64

Query: 67  KEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L    +     RAR E   + ++A A  I  GV+ E Q +F  + 
Sbjct: 65  SEVDIINDRTETPPPLASLNISKLANRARTEKEDKLSQAYA--ISAGVSIEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           KT+   +W +  I+VM++V +S PY  E+  G   +A   ++K+
Sbjct: 125 KTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKI 166

[Close]

BLAST of Lag0040024 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-06
Identity = 44/164 (26.83%), Postives = 73/164 (44.51%), Query Frame = 0


Query: 7   GNGDDFTVGSFFSIKTTLGDEFQGQEGSKPGPRR----------------NIRLLKANYI 66
           G G+ F+VGS  S  T LG   QG+  +   P +                ++ L+   Y+
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYV 64

Query: 67  KEFSFL-GHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALS 126
            E   +    E P  L     +    RAR E   + + A A  +  GV+ E Q +F  + 
Sbjct: 65  SEVDIITDRAETPPPLASLNFNKLVNRARAEKEDKLSLAYA--VSAGVSVEGQQLFQTIH 124

Query: 127 KTL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           KT+   +W +  I+VM++V +S PY  ++  G   +A   V+K+
Sbjct: 125 KTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKI 166

[Close]

BLAST of Lag0040024 vs. ExPASy Swiss-Prot
Match: Q0VCF9 (Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 45/163 (27.61%), Postives = 70/163 (42.94%), Query Frame = 0


Query: 9   GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIK 68
           G+ F+VGS  S +T      QG+                    KP    +I L+   Y+ 
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPN-HADILLINLQYVS 65

Query: 69  EFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 128
           E   +    E P  L    +     +AR E   + ++A A  I  GV+ E Q +F  + K
Sbjct: 66  EVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHK 125

Query: 129 TL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           T+   +W +  IVVM EV ++ PY  E+  G   +A   V+K+
Sbjct: 126 TIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKI 165

[Close]

BLAST of Lag0040024 vs. ExPASy Swiss-Prot
Match: Q3MHD2 (Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 45/163 (27.61%), Postives = 70/163 (42.94%), Query Frame = 0


Query: 9   GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIK 68
           G+ F+VGS  S +T      QG+                    KP    +I L+   Y+ 
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPN-HADILLINLQYVS 65

Query: 69  EFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 128
           E   +    E P  L    +     +AR E   + ++A A  I  GV+ E Q +F  + K
Sbjct: 66  EVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHK 125

Query: 129 TL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           T+   +W +  IVVM EV ++ PY  E+  G   +A   V+K+
Sbjct: 126 TIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKI 165

[Close]

BLAST of Lag0040024 vs. ExPASy Swiss-Prot
Match: Q9D0R8 (Protein LSM12 homolog OS=Mus musculus OX=10090 GN=Lsm12 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-06
Identity = 45/163 (27.61%), Postives = 70/163 (42.94%), Query Frame = 0


Query: 9   GDDFTVGSFFSIKTTLGDEFQGQ-----------------EGSKPGPRRNIRLLKANYIK 68
           G+ F+VGS  S +T      QG+                    KP    +I L+   Y+ 
Sbjct: 6   GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPN-HADILLINLQYVS 65

Query: 69  EFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSK 128
           E   +    E P  L    +     +AR E   + ++A A  I  GV+ E Q +F  + K
Sbjct: 66  EVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYA--ISAGVSLEGQQLFQTIHK 125

Query: 129 TL-PVRWDKTVIVVMNEVRVSNPYLPESVTGGTPAANERVKKV 153
           T+   +W +  IVVM EV ++ PY  E+  G   +A   V+K+
Sbjct: 126 TIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKI 165

The following BLAST results are available for this feature:

BLAST of Lag0040024 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52415.2	4.1e-74	90.80	hypothetical protein Csa_008581 [Cucumis sativus]	[more]
XP_038892233.1	9.1e-74	89.16	protein LSM12 homolog A-like [Benincasa hispida]	[more]
XP_004135229.1	9.1e-74	89.16	protein LSM12 homolog A [Cucumis sativus]	[more]
TYK15583.1	2.0e-73	89.57	protein LSM12-like protein A [Cucumis melo var. makuwa]	[more]
KAG6601368.1	2.0e-73	95.39	Protein LSM12-like A, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lag0040024 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBA2	2.0e-07	27.44	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1	[more]
Q6NSN1	1.3e-06	26.83	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1	[more]
Q0VCF9	4.9e-06	27.61	Protein LSM12 homolog OS=Bos taurus OX=9913 GN=LSM12 PE=2 SV=2	[more]
Q3MHD2	4.9e-06	27.61	Protein LSM12 homolog OS=Homo sapiens OX=9606 GN=LSM12 PE=1 SV=2	[more]
Q9D0R8	4.9e-06	27.61	Protein LSM12 homolog OS=Mus musculus OX=10090 GN=Lsm12 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019181	Anticodon-binding domain	SMART	SM00995	AD_2	coord: 66..152 e-value: 5.3E-31 score: 119.0
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 70..152 e-value: 1.4E-23 score: 82.7
IPR039683	Protein Lsm12-like	PANTHER	PTHR13542	LSM12 HOMOLOG	coord: 7..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0040024.1	Lag0040024.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding