Lag0039997 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039997
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein of unknown function (DUF1645)
Locationchr13: 1391536 .. 1392111 (+)
RNA-Seq ExpressionLag0039997
SyntenyLag0039997
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGAATTCGTTGAAGAAGACGCCTCTCCGATCGACGATTTCTCTTTCGTTTGTTTGAATCCAGATGGCTCTCCGATCAGTGCCGAAGACGCCTTCGTTAACGGCCTGATTCGCCCCGTTTTTCCCATCTTCGATCCACGGATTTTGCCTCATGTAAACGAAACAACGACGCCGGTTCCAGTTCGACCCCAGTTGAAGAAGCTATTCATGGAGGAAGAATTAGTCTGTTCGACCACTGAGGATCGGACTAGGGCTTCGGCTTCGGCGCCGGCGCCGGAGCTGGGTAAGAAGAGCTATTCCACGGGGTTCTCGAAGCTGCTGAGGTTCGGGGAGAAGATTCGGCGGAGCAGCAGCGACGGGAAGGAGGCGCTGGTGTTTCTGAGAAGTGCTTCGTCGGAGAAAGGGAAGGGAGAGAAGCGGACGAAAGGGGAAACGGCGTCGGATTGTCACGAGCGGCTTTACGCGAGGAATAGAGCGGAGAATGAAATGAATAAACGGAAATCGTATCTGCCGTACAGAAGCAATCTCATGGGGTTTTTTACCACTCCTAATGGCTTGAACAGAAATTTTTGA

mRNA sequence

ATGCAAGAATTCGTTGAAGAAGACGCCTCTCCGATCGACGATTTCTCTTTCGTTTGTTTGAATCCAGATGGCTCTCCGATCAGTGCCGAAGACGCCTTCGTTAACGGCCTGATTCGCCCCGTTTTTCCCATCTTCGATCCACGGATTTTGCCTCATGTAAACGAAACAACGACGCCGGTTCCAGTTCGACCCCAGTTGAAGAAGCTATTCATGGAGGAAGAATTAGTCTGTTCGACCACTGAGGATCGGACTAGGGCTTCGGCTTCGGCGCCGGCGCCGGAGCTGGGTAAGAAGAGCTATTCCACGGGGTTCTCGAAGCTGCTGAGGTTCGGGGAGAAGATTCGGCGGAGCAGCAGCGACGGGAAGGAGGCGCTGGTGTTTCTGAGAAGTGCTTCGTCGGAGAAAGGGAAGGGAGAGAAGCGGACGAAAGGGGAAACGGCGTCGGATTGTCACGAGCGGCTTTACGCGAGGAATAGAGCGGAGAATGAAATGAATAAACGGAAATCGTATCTGCCGTACAGAAGCAATCTCATGGGGTTTTTTACCACTCCTAATGGCTTGAACAGAAATTTTTGA

Coding sequence (CDS)

ATGCAAGAATTCGTTGAAGAAGACGCCTCTCCGATCGACGATTTCTCTTTCGTTTGTTTGAATCCAGATGGCTCTCCGATCAGTGCCGAAGACGCCTTCGTTAACGGCCTGATTCGCCCCGTTTTTCCCATCTTCGATCCACGGATTTTGCCTCATGTAAACGAAACAACGACGCCGGTTCCAGTTCGACCCCAGTTGAAGAAGCTATTCATGGAGGAAGAATTAGTCTGTTCGACCACTGAGGATCGGACTAGGGCTTCGGCTTCGGCGCCGGCGCCGGAGCTGGGTAAGAAGAGCTATTCCACGGGGTTCTCGAAGCTGCTGAGGTTCGGGGAGAAGATTCGGCGGAGCAGCAGCGACGGGAAGGAGGCGCTGGTGTTTCTGAGAAGTGCTTCGTCGGAGAAAGGGAAGGGAGAGAAGCGGACGAAAGGGGAAACGGCGTCGGATTGTCACGAGCGGCTTTACGCGAGGAATAGAGCGGAGAATGAAATGAATAAACGGAAATCGTATCTGCCGTACAGAAGCAATCTCATGGGGTTTTTTACCACTCCTAATGGCTTGAACAGAAATTTTTGA

Protein sequence

MQEFVEEDASPIDDFSFVCLNPDGSPISAEDAFVNGLIRPVFPIFDPRILPHVNETTTPVPVRPQLKKLFMEEELVCSTTEDRTRASASAPAPELGKKSYSTGFSKLLRFGEKIRRSSSDGKEALVFLRSASSEKGKGEKRTKGETASDCHERLYARNRAENEMNKRKSYLPYRSNLMGFFTTPNGLNRNF
Homology
BLAST of Lag0039997 vs. NCBI nr
Match: XP_038891720.1 (uncharacterized protein LOC120081118 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-58
Identity = 143/198 (72.22%), Postives = 153/198 (77.27%), Query Frame = 0

Query: 7   EDASPIDDFSFVCLNPDGSPISAEDAFVNGLIRPVFPIFDPRILP----HVNETTTPVPV 66
           ED    DDFSFV LNPDGSPISAEDAF+NG IRPVFPIFD RIL      V ETT+   V
Sbjct: 16  EDNGIDDDFSFVYLNPDGSPISAEDAFLNGQIRPVFPIFDQRILTDGGFEVKETTS---V 75

Query: 67  RPQLKKLFMEEELVCSTTEDRTRASASAPAPELGKKSYSTGFSKLLRFGEKIRRSSSDGK 126
           RP LKKLFM E+ VCS TE +TRAS SAP   LGKKSYSTGFSKL RFG+KI RSSS+GK
Sbjct: 76  RPHLKKLFM-EDFVCSRTETQTRASTSAPG--LGKKSYSTGFSKLWRFGDKIWRSSSEGK 135

Query: 127 -EALVFLRSASSEKG-----KGEKR---TKGETASDCHERLYARNRAENEMNKRKSYLPY 186
            EA +FLRSASS  G     K EK+   TKGETAS  HER YARNRAE+E+NKRKSYLPY
Sbjct: 136 EEAFLFLRSASSRSGGGGGDKAEKKKTTTKGETASYYHERHYARNRAESEVNKRKSYLPY 195

Query: 187 RSNLMGFFTTPNGLNRNF 192
           RSNLMGFFT PNGLNRNF
Sbjct: 196 RSNLMGFFTAPNGLNRNF 207

BLAST of Lag0039997 vs. NCBI nr
Match: XP_011656255.1 (uncharacterized protein LOC105435701 [Cucumis sativus] >KGN51805.1 hypothetical protein Csa_008044 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 3.4e-55
Identity = 136/195 (69.74%), Postives = 149/195 (76.41%), Query Frame = 0

Query: 7   EDASPIDDFSFVCLNPDGSPISAEDAFVNGLIRPVFPIFDPRIL-PHVNETTTPVPVRPQ 66
           +D   +DDFSFVCLNPDGSPI AEDAF+NG IRPVFP+FD RIL   VN TT+      Q
Sbjct: 15  DDNEVLDDFSFVCLNPDGSPIRAEDAFLNGQIRPVFPLFDQRILSDDVNGTTS------Q 74

Query: 67  LKKLFMEEELVCSTTEDRTRAS-ASAPAPELGKKSYSTGFSKLLRFGEKIRRSSSDGK-E 126
           LK LF+EE     T   +TRAS  +APAP LGKKSYSTGFSKL RFG+KIRRSSS+GK E
Sbjct: 75  LKNLFVEE----FTEIPQTRASTTTAPAPVLGKKSYSTGFSKLWRFGDKIRRSSSEGKEE 134

Query: 127 ALVFLRSASSEKG-KGEKRTK------GETASDCHERLYARNRAENEMNKRKSYLPYRSN 186
           A +FLRSASS  G K EK+TK       ETAS  HER YARNRAENE+NKRKSYLPYRSN
Sbjct: 135 AFLFLRSASSGSGEKAEKKTKKKKKQQNETASYYHERHYARNRAENEVNKRKSYLPYRSN 194

Query: 187 LMGFFTTPNGLNRNF 192
           LMGFFT PNGLNRNF
Sbjct: 195 LMGFFTAPNGLNRNF 199

BLAST of Lag0039997 vs. NCBI nr
Match: ADN33835.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0034315.1 hypothetical protein E6C27_scaffold65G003150 [Cucumis melo var. makuwa] >TYK15605.1 hypothetical protein E5676_scaffold35G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 7.0e-53
Identity = 131/198 (66.16%), Postives = 145/198 (73.23%), Query Frame = 0

Query: 7   EDASPIDDFSFVCLNPDGSPISAEDAFVNGLIRPVFPIFDPRIL-PHVNETTTPVPVRPQ 66
           ED   +DDFSFVCLNPDGSPI AEDAF+NG IRPVFP+FD RIL   VN TT+      Q
Sbjct: 19  EDNEVLDDFSFVCLNPDGSPIRAEDAFLNGQIRPVFPLFDQRILSDDVNGTTS------Q 78

Query: 67  LKKLFMEEELVCSTTEDRTRASASAPAPELGKKSYSTGFSKLLRFGEKIRRSSSDGK-EA 126
           LK LF+EE     T   +TRA+    AP LGKKSYSTGFSKL RFG+KIRRSSS+GK EA
Sbjct: 79  LKNLFVEE----FTESPQTRAA----APVLGKKSYSTGFSKLWRFGDKIRRSSSEGKEEA 138

Query: 127 LVFLRSASSEKG-----------KGEKRTKGETASDCHERLYARNRAENEMNKRKSYLPY 186
            +FLRSASS  G           + +K+ K ETAS  HER YARNRAENE+NKRKSYLPY
Sbjct: 139 FLFLRSASSGSGEKAEKEKEKEKEKKKKKKAETASYYHERHYARNRAENEVNKRKSYLPY 198

Query: 187 RSNLMGFFTTPNGLNRNF 192
           RSNLMGFFT PNGLNRNF
Sbjct: 199 RSNLMGFFTAPNGLNRNF 202

BLAST of Lag0039997 vs. NCBI nr
Match: XP_022151187.1 (uncharacterized protein LOC111019169 [Momordica charantia])

HSP 1 Score: 218.0 bits (554), Expect = 7.0e-53
Identity = 137/219 (62.56%), Postives = 149/219 (68.04%), Query Frame = 0

Query: 9   ASPIDDFSFVCLNPDGSPISAEDAFVNGLIRPVFPIFDPRIL---PHVNETTT---PVPV 68
           A   DDFSFVC NPDGSPISAEDAFVNG IRPVFP+FD R+L       ETT+   PV V
Sbjct: 22  ADDYDDFSFVCSNPDGSPISAEDAFVNGQIRPVFPVFDQRLLFSQTKAEETTSLPLPVRV 81

Query: 69  RP--QLKKLFMEEELVCSTTEDRTRAS-----------ASAPAPELGKKSYSTGFSKLLR 128
           RP  QLKKLFME+E + S T+D TR +               APELGKKSYSTGFSKL R
Sbjct: 82  RPQAQLKKLFMEDEELRSDTQDLTRVAPEIYCEWSPRKVGEAAPELGKKSYSTGFSKLWR 141

Query: 129 FGEKIRRSSSDGKEALVFLRSASSEKGKGE----------------KRTKG--ETASDCH 188
           FG++IRRSSSDGKEA VFLRS SS  G GE                +RTKG  ETAS  H
Sbjct: 142 FGDRIRRSSSDGKEAFVFLRSPSS-GGGGEAKLKANGGSGSGSGSGRRTKGERETASCYH 201

Query: 189 ERLYARNRAENEMNKRKSYLPYRSNLMGFFTTPNGLNRN 191
           ER YARNRAENEMNKRKSYLPYRSNL+GFFT+ N  N N
Sbjct: 202 ERHYARNRAENEMNKRKSYLPYRSNLVGFFTSVNNNNNN 239

BLAST of Lag0039997 vs. NCBI nr
Match: XP_023542069.1 (uncharacterized protein LOC111802044 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207.6 bits (527), Expect = 9.5e-50
Identity = 128/194 (65.98%), Postives = 138/194 (71.13%), Query Frame = 0

Query: 12  IDDFSFVCLNPDGSPISAEDAFVNGLIRPVFPIFDPRILPHVNETTTPVPVRPQLKKLFM 71
           +DDFSF+ LNPD SPISAEDAF+NG IR VFP      L    +T  P  VRP LK LFM
Sbjct: 18  LDDFSFLSLNPDRSPISAEDAFLNGQIRSVFP------LAIEAKTKEPQAVRPPLKNLFM 77

Query: 72  EEELVCSTTEDRTRA-----SASAPAPELGKKSYSTGFSKLLRFGEKIRRSSSDGKEALV 131
           EE  + S TE+R+       SASA    LGKKS+STGFSKL RFGEKIRRSSSDGKEA V
Sbjct: 78  EE--LISPTENRSNVSPDEWSASAAPTTLGKKSHSTGFSKLWRFGEKIRRSSSDGKEAFV 137

Query: 132 FLRSASSEKG--------KGEKRTKGETASDCHERLYARNRAENEMNKRKSYLPYRSNLM 191
           FLRS SSE G        KG KRTKGETAS  HERLY RNRAE E+NKRKS+LPYRSNLM
Sbjct: 138 FLRSDSSESGGEKAAENRKGGKRTKGETASCYHERLYTRNRAEKEINKRKSFLPYRSNLM 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038891720.11.5e-5872.22uncharacterized protein LOC120081118 [Benincasa hispida][more]
XP_011656255.13.4e-5569.74uncharacterized protein LOC105435701 [Cucumis sativus] >KGN51805.1 hypothetical ... [more]
ADN33835.17.0e-5366.16hypothetical protein [Cucumis melo subsp. melo] >KAA0034315.1 hypothetical prote... [more]
XP_022151187.17.0e-5362.56uncharacterized protein LOC111019169 [Momordica charantia][more]
XP_023542069.19.5e-5065.98uncharacterized protein LOC111802044 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33095FAMILY NOT NAMEDcoord: 10..189
NoneNo IPR availablePANTHERPTHR33095:SF73DUF1645 FAMILY PROTEINcoord: 10..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039997.1Lag0039997.1mRNA