Lag0039986 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTACTGATTCCGCTTCTTCATTGTCGATCGCCGTTCTTGAAGCTTCGAAAATCCTTCGCCTGCTCTGTTTCGTATTCTGTATAATTTTGCTCTGTTTTTTCAGGTGATCGGTAACAAATGGGACACTTATCTTGAACTTCTACAAGCAGACTATCCGGAAGGGTAAGAGAGAACGAACGTCTCTTTCTTCTGCTCCTTCCTCTTCTTAAATTTGAATCGCTTTCCTTTGATTTTGATCCTACCATCGCGAACACGATCCTTCCGATTTCTTTCTCGTATTTTGAATTTTTCGAAACGCATTTTGATTTGGAAGACCTAATTTCTTCAATATTAAGGCTCTGCGTTTAGAAATAGTTATGAATTTGTTAGAAGTAGCAAGGAAGTGGAAGGATTGAAAGATGATGAAATAGTAATTGAGGATGCAGGGAGGCATTGGATATGTTAGGGCTAGTTCGATACTGCTGCCGGCGGATGCTTATGACTCATGTGGATCTCATAGAGAAGCTCTTGAATTACAACAGTAATCTCTTTTTCTCTGGATTTTATTGATGATTTAGAAGTGTTTCTGATGGATTTATGTGTTGTTGACGCTGATTATTTTGCAGCCATGGATAAGTCTGAAATCGTGTAGCTGATGAGGAAGCCTTTCGATATGCCAACAAGAAGAATGCTGCAATGCAATGCAATGCTGTGTAA ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTGATCGGTAACAAATGGGACACTTATCTTGAACTTCTACAAGCAGACTATCCGGAAGGGGAGGCATTGGATATGTTAGGGCTAGTTCGATACTGCTGCCGGCGGATGCTTATGACTCATGTGGATCTCATAGAGAAGCTCTTGAATTACAACACTGATGAGGAAGCCTTTCGATATGCCAACAAGAAGAATGCTGCAATGCAATGCAATGCTGTGTAA ATGATAATTCCGGTGCGCTGTTTCACGTGCGGCAAGGTGATCGGTAACAAATGGGACACTTATCTTGAACTTCTACAAGCAGACTATCCGGAAGGGGAGGCATTGGATATGTTAGGGCTAGTTCGATACTGCTGCCGGCGGATGCTTATGACTCATGTGGATCTCATAGAGAAGCTCTTGAATTACAACACTGATGAGGAAGCCTTTCGATATGCCAACAAGAAGAATGCTGCAATGCAATGCAATGCTGTGTAA MIIPVRCFTCGKVIGNKWDTYLELLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLLNYNTDEEAFRYANKKNAAMQCNAV Homology
BLAST of Lag0039986 vs. NCBI nr
Match: XP_038893151.1 (DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]) HSP 1 Score: 142.1 bits (357), Expect = 2.1e-30 Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 0
BLAST of Lag0039986 vs. NCBI nr
Match: XP_004135479.1 (DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus] >KGN51793.1 hypothetical protein Csa_009052 [Cucumis sativus]) HSP 1 Score: 141.0 bits (354), Expect = 4.8e-30 Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 0
BLAST of Lag0039986 vs. NCBI nr
Match: XP_022151052.1 (DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]) HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29 Identity = 62/68 (91.18%), Postives = 67/68 (98.53%), Query Frame = 0
BLAST of Lag0039986 vs. NCBI nr
Match: XP_008446194.1 (PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo] >KAA0034305.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 138.7 bits (348), Expect = 2.4e-29 Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lag0039986 vs. NCBI nr
Match: XP_040374532.1 (DNA-directed RNA polymerase subunit 10-like protein [Rosa chinensis] >PRQ40975.1 putative DNA-directed RNA polymerase transcription regulator Homeodomain-LIKE family [Rosa chinensis]) HSP 1 Score: 138.3 bits (347), Expect = 3.1e-29 Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 0
BLAST of Lag0039986 vs. ExPASy Swiss-Prot
Match: Q9SYA6 (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana OX=3702 GN=NRPB10L PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 1.5e-31 Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0
BLAST of Lag0039986 vs. ExPASy Swiss-Prot
Match: Q39290 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus OX=3708 PE=3 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 2.5e-29 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of Lag0039986 vs. ExPASy Swiss-Prot
Match: Q8LFJ6 (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana OX=3702 GN=NRPB10 PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 5.5e-29 Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0
BLAST of Lag0039986 vs. ExPASy Swiss-Prot
Match: Q55AB6 (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum OX=44689 GN=polr2l PE=3 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 4.4e-26 Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 0
BLAST of Lag0039986 vs. ExPASy Swiss-Prot
Match: Q32P78 (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus OX=9913 GN=POLR2L PE=1 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 9.7e-26 Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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