Lag0039955 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039955
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L27A
Location	chr13: 1123997 .. 1124437 (+)
RNA-Seq Expression	Lag0039955
Synteny	Lag0039955

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGCGCCGGTCATGGTCGAATCGGCAAACACCGCAAGCATCCAGGTGGTCGGGGTAACGCCGGAGGTATGCACCACCACCGGATTCTCTTTGACAAATATCACCCTGGTTATTTCGGTAAAGTCGGTATGCGTTACTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACATTGACAAGATCTGGTCGTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCTTTGGTTGATGTCACGCAGTTCGGGTACTTCAAGGTTTTGGGCAAGGGTGTCTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTCGTGTCGAAGATCGCCGAGAAGAAGATCAAGGAGGCTGGTGGCGCGGTGGTTCTCACAGCTTAG

mRNA sequence

ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGCGCCGGTCATGGTCGAATCGGCAAACACCGCAAGCATCCAGGTGGTCGGGGTAACGCCGGAGGTATGCACCACCACCGGATTCTCTTTGACAAATATCACCCTGGTTATTTCGGTAAAGTCGGTATGCGTTACTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACATTGACAAGATCTGGTCGTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCTTTGGTTGATGTCACGCAGTTCGGGTACTTCAAGGTTTTGGGCAAGGGTGTCTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTCGTGTCGAAGATCGCCGAGAAGAAGATCAAGGAGGCTGGTGGCGCGGTGGTTCTCACAGCTTAG

Coding sequence (CDS)

ATGACGACTCGTTTCAAGAAGAACAGGAAGAAGAGAGGACATGTGAGCGCCGGTCATGGTCGAATCGGCAAACACCGCAAGCATCCAGGTGGTCGGGGTAACGCCGGAGGTATGCACCACCACCGGATTCTCTTTGACAAATATCACCCTGGTTATTTCGGTAAAGTCGGTATGCGTTACTTCCACAAGCTTCGCAACAAGTTCTATTGCCCGATTGTCAACATTGACAAGATCTGGTCGTTGATCCCTCAAGAAGTGAAGGATAAGGCCTCCAAAGACAACGTTCCTTTGGTTGATGTCACGCAGTTCGGGTACTTCAAGGTTTTGGGCAAGGGTGTCTTGCCGGAGAATCAGCCTATTGTGGTGAAGGCCAAGCTCGTGTCGAAGATCGCCGAGAAGAAGATCAAGGAGGCTGGTGGCGCGGTGGTTCTCACAGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPIVVKAKLVSKIAEKKIKEAGGAVVLTA

Homology

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BLAST of Lag0039955 vs. NCBI nr
Match: XP_008446169.1 (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022957581.1 60S ribosomal protein L27a-3 [Cucurbita moschata] >XP_022966982.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_022984987.1 60S ribosomal protein L27a-3 [Cucurbita maxima] >XP_023523163.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_023541079.1 60S ribosomal protein L27a-3 [Cucurbita pepo subsp. pepo] >XP_031741794.1 60S ribosomal protein L27a-3 [Cucumis sativus] >KAA0034278.1 60S ribosomal protein L27a-3-like [Cucumis melo var. makuwa] >KAG6573714.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012791.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6601534.1 60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. sororia] >KGN51763.1 hypothetical protein Csa_007887 [Cucumis sativus])

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 145/146 (99.32%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Lag0039955 vs. NCBI nr
Match: XP_038891740.1 (60S ribosomal protein L27a-3-like [Benincasa hispida])

HSP 1 Score: 294.7 bits (753), Expect = 4.5e-76
Identity = 144/146 (98.63%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGG+VVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGSVVLTA 146

[Close]

BLAST of Lag0039955 vs. NCBI nr
Match: KAG7032307.1 (60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIK AGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKGAGGAVVLTA 146

[Close]

BLAST of Lag0039955 vs. NCBI nr
Match: XP_010102488.1 (60S ribosomal protein L27a-3 [Morus notabilis] >XP_010113107.1 60S ribosomal protein L27a-3 [Morus notabilis] >EXB93552.1 hypothetical protein L484_014543 [Morus notabilis] >EXC65297.1 hypothetical protein L484_000089 [Morus notabilis])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNIDK+WS++PQ+VKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQDVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Lag0039955 vs. NCBI nr
Match: XP_024023976.1 (60S ribosomal protein L27a-3-like [Morus notabilis])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 140/146 (95.89%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNIDK+W+++PQEVKDKASKDNVPL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWAMVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKLVSKIAEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Lag0039955 vs. ExPASy Swiss-Prot
Match: P49637 (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 3.1e-72
Identity = 129/146 (88.36%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K++KDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Lag0039955 vs. ExPASy Swiss-Prot
Match: Q9LR33 (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-70
Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DK+WSL+P++VK K+SKDNVPL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           VVKAKL+SK AEKKIKEAGGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Lag0039955 vs. ExPASy Swiss-Prot
Match: P48160 (60S ribosomal protein L27a OS=Dictyostelium discoideum OX=44689 GN=rpl27a PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.4e-50
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1   MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           FH LRN+++CP V+++KIW+L+P+ V+   +  N    P+VDVTQ G+FKVLG G+LP  
Sbjct: 61  FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QPI+VKA+  SK+AEKKIK  GGA +L A
Sbjct: 121 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

[Close]

BLAST of Lag0039955 vs. ExPASy Swiss-Prot
Match: O01358 (60S ribosomal protein L27a OS=Oscheius tipulae OX=141969 GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-49
Identity = 95/146 (65.07%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPGYFGKVGMR 
Sbjct: 1   MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120
           FH  +N  YCP VN+D++W+L+P+E K K S +  P++D  + GYFKVLGKG+LP+ QP+
Sbjct: 61  FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPL 120

Query: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 147
           +VKAK  S  AE KIK AGGA +L A
Sbjct: 121 IVKAKFFSHEAENKIKAAGGACILVA 145

[Close]

BLAST of Lag0039955 vs. ExPASy Swiss-Prot
Match: Q56K03 (60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3)

HSP 1 Score: 196.1 bits (497), Expect = 2.9e-49
Identity = 95/149 (63.76%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNIDKIWSLIPQEVKDKASKDN---VPLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DK+W+L+ ++ +  A+K+     P++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLVSKIAEKKIKEAGGAVVLTA 147
           QP++VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

The following BLAST results are available for this feature:

BLAST of Lag0039955 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446169.1	2.0e-76	99.32	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis melo] >XP_022945883.1 60S ribos...	[more]
XP_038891740.1	4.5e-76	98.63	60S ribosomal protein L27a-3-like [Benincasa hispida]	[more]
KAG7032307.1	1.3e-75	98.63	60S ribosomal protein L27a-3, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_010102488.1	2.2e-75	95.89	60S ribosomal protein L27a-3 [Morus notabilis] >XP_010113107.1 60S ribosomal pro...	[more]
XP_024023976.1	2.2e-75	95.89	60S ribosomal protein L27a-3-like [Morus notabilis]	[more]

BLAST of Lag0039955 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49637	3.1e-72	88.36	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27AC PE=2 SV=...	[more]
Q9LR33	1.3e-70	86.99	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27AB PE=2 SV=...	[more]
P48160	4.4e-50	64.43	60S ribosomal protein L27a OS=Dictyostelium discoideum OX=44689 GN=rpl27a PE=3 S...	[more]
O01358	2.2e-49	65.07	60S ribosomal protein L27a OS=Oscheius tipulae OX=141969 GN=rpl-27a PE=3 SV=1	[more]
Q56K03	2.9e-49	63.76	60S ribosomal protein L27a OS=Bos taurus OX=9913 GN=RPL27A PE=2 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.100.10.10		coord: 58..146 e-value: 1.8E-39 score: 135.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146
None	No IPR available	PANTHER	PTHR11721:SF21	60S RIBOSOMAL PROTEIN L27A-3	coord: 1..146
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 e-value: 3.9E-20 score: 72.8
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139
IPR030878	Ribosomal protein L15	HAMAP	MF_01341	Ribosomal_L15	coord: 1..145 score: 11.992333
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 6..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039955.1	Lag0039955.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome