Lag0039905 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039905
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Patatin
Location	chr13: 744550 .. 744912 (+)
RNA-Seq Expression	Lag0039905
Synteny	Lag0039905

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAACGACAACTCAATGCTATTTTTAAGGAACGTCACTCCGAGAATAACTATCTTCGCATTCAAGACGACACCCTAAGTGACGTCGTTTCTTCCGTCGACGTGGCGACGAAGGAGAATTTGAATGATCTCGTGAAGATTGGAGAAAGATTGTTGAAGAAAAAAGTATCGAAGGTAAATCTGCAGACGGGTGTTCTTGAGGATTTTGGCACTTCAGAAACCAACGAAGAAGCTATCATCAAATTTGCCAAATTGCTTTCTCAAGATTTTAACTATACACTAATTTCTTCAAATAAACGTGCTCACTTGACAATGACAAACATACACTGCTATTCAAATTCATCAATATTGGAAGCATAG

mRNA sequence

ATGGTGGAACGACAACTCAATGCTATTTTTAAGGAACGTCACTCCGAGAATAACTATCTTCGCATTCAAGACGACACCCTAAGTGACGTCGTTTCTTCCGTCGACGTGGCGACGAAGGAGAATTTGAATGATCTCGTGAAGATTGGAGAAAGATTGTTGAAGAAAAAAGTATCGAAGGTAAATCTGCAGACGGGTGTTCTTGAGGATTTTGGCACTTCAGAAACCAACGAAGAAGCTATCATCAAATTTGCCAAATTGCTTTCTCAAGATTTTAACTATACACTAATTTCTTCAAATAAACGTGCTCACTTGACAATGACAAACATACACTGCTATTCAAATTCATCAATATTGGAAGCATAG

Coding sequence (CDS)

ATGGTGGAACGACAACTCAATGCTATTTTTAAGGAACGTCACTCCGAGAATAACTATCTTCGCATTCAAGACGACACCCTAAGTGACGTCGTTTCTTCCGTCGACGTGGCGACGAAGGAGAATTTGAATGATCTCGTGAAGATTGGAGAAAGATTGTTGAAGAAAAAAGTATCGAAGGTAAATCTGCAGACGGGTGTTCTTGAGGATTTTGGCACTTCAGAAACCAACGAAGAAGCTATCATCAAATTTGCCAAATTGCTTTCTCAAGATTTTAACTATACACTAATTTCTTCAAATAAACGTGCTCACTTGACAATGACAAACATACACTGCTATTCAAATTCATCAATATTGGAAGCATAG

Protein sequence

MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKVNLQTGVLEDFGTSETNEEAIIKFAKLLSQDFNYTLISSNKRAHLTMTNIHCYSNSSILEA

Homology

[Close]

BLAST of Lag0039905 vs. NCBI nr
Match: KAG8632591.1 (hypothetical protein MANES_18G033422v8 [Manihot esculenta])

HSP 1 Score: 120.6 bits (301), Expect = 9.6e-24
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  ++ +FK  HSE+NYLRIQDDTLS  VSSVDVATK+NL+DLVK+GE LLKK VS+V
Sbjct: 304 MVDFHISVVFKALHSESNYLRIQDDTLSRTVSSVDVATKKNLDDLVKVGEGLLKKPVSRV 363

Query: 61  NLQTGVLEDFGTSETNEEAIIKFAKLLSQD 91
           NL+TGV E FG  ETNEEA+I+FAKLLS++
Sbjct: 364 NLETGVFEPFG-KETNEEALIRFAKLLSEE 392

[Close]

BLAST of Lag0039905 vs. NCBI nr
Match: KAG6674747.1 (hypothetical protein I3842_15G060500 [Carya illinoinensis])

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-23
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  L+ +F++ HSEN+YLRIQDDTL+ VVSSVDVAT +NLNDLVK+GE LLKK V++V
Sbjct: 302 MVDVHLSQVFQDLHSENSYLRIQDDTLTGVVSSVDVATTKNLNDLVKVGEELLKKPVARV 361

Query: 61  NLQTGVLEDFGTS-ETNEEAIIKFAKLLSQD 91
           NL+TGV E   TS ETNE+A+I+FAKLLSQ+
Sbjct: 362 NLETGVCEPVKTSNETNEQALIRFAKLLSQE 392

[Close]

BLAST of Lag0039905 vs. NCBI nr
Match: XP_042962913.1 (patatin-like protein 2 [Carya illinoinensis] >KAG6626611.1 hypothetical protein CIPAW_15G062500 [Carya illinoinensis] >KAG7943724.1 hypothetical protein I3843_15G057600 [Carya illinoinensis])

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-23
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  L+ +F++ HSEN+YLRIQDDTL+ VVSSVDVAT +NLNDLVK+GE LLKK V++V
Sbjct: 302 MVDVHLSQVFQDLHSENSYLRIQDDTLTGVVSSVDVATTKNLNDLVKVGEELLKKPVARV 361

Query: 61  NLQTGVLEDFGTS-ETNEEAIIKFAKLLSQD 91
           NL+TGV E   TS ETNE+A+I+FAKLLSQ+
Sbjct: 362 NLETGVCEPVKTSNETNEQALIRFAKLLSQE 392

[Close]

BLAST of Lag0039905 vs. NCBI nr
Match: KAG2666390.1 (hypothetical protein I3760_15G058000 [Carya illinoinensis])

HSP 1 Score: 117.9 bits (294), Expect = 6.2e-23
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  L+ +F++ HSEN+YLRIQDDTL+ VVSSVDVAT +NLNDLVK+GE LLKK V++V
Sbjct: 302 MVDVHLSQVFQDLHSENSYLRIQDDTLTGVVSSVDVATTKNLNDLVKVGEELLKKPVARV 361

Query: 61  NLQTGVLEDFGTS-ETNEEAIIKFAKLLSQD 91
           NL+TGV E   TS ETNE+A+I+FAKLLSQ+
Sbjct: 362 NLETGVCEPVKTSNETNEQALIRFAKLLSQE 392

[Close]

BLAST of Lag0039905 vs. NCBI nr
Match: KAF8006911.1 (hypothetical protein BT93_K1031 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  L+A+F+  H  +NYLRIQDDTLS V+SSVDVATK+NLNDLVK GE LLKK VS+V
Sbjct: 300 MVDFHLSAVFQALHLHDNYLRIQDDTLSGVLSSVDVATKKNLNDLVKTGEALLKKPVSRV 359

Query: 61  NLQTGVLEDFGTSETNEEAIIKFAKLLSQD 91
           NL++GV E     ETNEEA+I+FAKLLSQ+
Sbjct: 360 NLESGVCEPTPNQETNEEALIRFAKLLSQE 389

[Close]

BLAST of Lag0039905 vs. ExPASy Swiss-Prot
Match: O23181 (Patatin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLP3 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-17
Identity = 43/90 (47.78%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+ Q + +F+   SE NYLRI DD+L   + SVD++T++N+  LV++GE LLKK+VS+V
Sbjct: 326 MVDYQSSVVFQALRSEKNYLRIDDDSLKGDLGSVDISTEKNMEGLVEVGEALLKKRVSRV 385

Query: 61  NLQTGVLEDFGTSETNEEAIIKFAKLLSQD 91
           NL++G  +    + TNEEA+ +FAK+LS++
Sbjct: 386 NLESGHYQPISENVTNEEALKRFAKVLSEE 415

[Close]

BLAST of Lag0039905 vs. ExPASy Swiss-Prot
Match: O48723 (Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-16
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  L+A+F+  HSE NY+RIQDDTL+   +SVD+AT ENL+ L K G+ LLKK V++V
Sbjct: 302 MVDFHLSAVFRALHSEANYIRIQDDTLTGDAASVDIATVENLDILAKTGDELLKKPVARV 361

Query: 61  NLQTGVLEDFGTSETNEEAIIKFAKLLSQD 91
           NL +G  E+     TNE A+IK A +LS++
Sbjct: 362 NLDSGCNEN-AYETTNEHALIKLAGILSKE 390

[Close]

BLAST of Lag0039905 vs. ExPASy Swiss-Prot
Match: O23179 (Patatin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PLP1 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           M+    + +FK   SE+ YLRI DDTL   VS++D+ATK NL +L KIGE++L  +V ++
Sbjct: 302 MIHYHSSVVFKALQSEDKYLRIDDDTLEGDVSTMDLATKSNLENLQKIGEKMLTNRVMQM 361

Query: 61  NLQTGVLEDFGTSETNEEAIIKFAKLLSQD 91
           N+ TGV E    + TN+E + ++AK+LS +
Sbjct: 362 NIDTGVYEPVAENITNDEQLKRYAKILSDE 391

[Close]

BLAST of Lag0039905 vs. ExPASy Swiss-Prot
Match: A2YW91 (Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  L  +F     E NYLRIQ D L+    S+D  +KEN+++LVKIGE LL K VS+V
Sbjct: 306 MVDIHLGVLFSALQCEKNYLRIQYDQLTGSAGSIDDCSKENMDNLVKIGEMLLDKNVSRV 365

Query: 61  NLQTGVLEDFGTSETNEEAIIKFAKLLSQD 91
           +L+TG   D     TN + + KFAK LS +
Sbjct: 366 DLETGHYVDVAGEGTNRDQLAKFAKQLSDE 395

[Close]

BLAST of Lag0039905 vs. ExPASy Swiss-Prot
Match: Q6ZJD3 (Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-13
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 1   MVERQLNAIFKERHSENNYLRIQDDTLSDVVSSVDVATKENLNDLVKIGERLLKKKVSKV 60
           MV+  L  +F     E NYLRIQ D L+    S+D  +KEN+++LVKIGE LL K VS+V
Sbjct: 306 MVDIHLGVLFSALQCEKNYLRIQYDQLTGSAGSIDDCSKENMDNLVKIGEMLLDKNVSRV 365

Query: 61  NLQTGVLEDFGTSETNEEAIIKFAKLLSQD 91
           +L+TG   D     TN + + KFAK LS +
Sbjct: 366 DLETGHYVDVAGEGTNRDQLAKFAKQLSDE 395

The following BLAST results are available for this feature:

BLAST of Lag0039905 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8632591.1	9.6e-24	70.00	hypothetical protein MANES_18G033422v8 [Manihot esculenta]	[more]
KAG6674747.1	6.2e-23	68.13	hypothetical protein I3842_15G060500 [Carya illinoinensis]	[more]
XP_042962913.1	6.2e-23	68.13	patatin-like protein 2 [Carya illinoinensis] >KAG6626611.1 hypothetical protein ...	[more]
KAG2666390.1	6.2e-23	68.13	hypothetical protein I3760_15G058000 [Carya illinoinensis]	[more]
KAF8006911.1	1.8e-22	67.78	hypothetical protein BT93_K1031 [Corymbia citriodora subsp. variegata]	[more]

BLAST of Lag0039905 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23181	5.3e-17	47.78	Patatin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PLP3 PE=2 SV=2	[more]
O48723	2.6e-16	52.22	Patatin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PLP2 PE=1 SV=1	[more]
O23179	1.1e-14	44.44	Patatin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PLP1 PE=1 SV=2	[more]
A2YW91	2.1e-13	46.67	Patatin-like protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=PLP2 PE=3 SV=1	[more]
Q6ZJD3	2.1e-13	46.67	Patatin-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=PLP2 PE=3 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1090.10	Cytosolic phospholipase A2 catalytic domain	coord: 1..95 e-value: 6.1E-18 score: 67.1
None	No IPR available	PANTHER	PTHR32176	XYLOSE ISOMERASE	coord: 1..93
None	No IPR available	PANTHER	PTHR32176:SF59	PATATIN-LIKE PROTEIN 2	coord: 1..93
IPR016035	Acyl transferase/acyl hydrolase/lysophospholipase	SUPERFAMILY	52151	FabD/lysophospholipase-like	coord: 3..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039905.1	Lag0039905.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016042	lipid catabolic process
molecular_function	GO:0047372	acylglycerol lipase activity
molecular_function	GO:0004620	phospholipase activity