Lag0039901 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039901
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Location	chr13: 738136 .. 738666 (-)
RNA-Seq Expression	Lag0039901
Synteny	Lag0039901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACAATGGCGACCATGGCCATCCTCAACGCCAAATGCTTCACTCCCAACAAAATTCCAATCATCCCTTCCAAACCCACGAGACCCATTTCCCTTCCCACCCTCCCACCCAAATCTTCCCTCGCCGGAACCGCCATCGCCGGAGCAATCTTCTCAACTCTCTGCTCCGGCGATGCCGCCTTCGCCGCGCAGCAAATCGCGGATCTAGCGGAGGGCGACAACCGGGGGCTGGCCCTGTTGCTGCCGCTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAACCAGCTGAACCGGATGCGGACGGAGAAGGCGATGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCCGGGCTGGTCGGGACACCGGAGGCTATGGCGGCAGAGGCTTCGAGCGACGGGCGGGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTTTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCCGAGTGA

mRNA sequence

ATGGCGGCAACAATGGCGACCATGGCCATCCTCAACGCCAAATGCTTCACTCCCAACAAAATTCCAATCATCCCTTCCAAACCCACGAGACCCATTTCCCTTCCCACCCTCCCACCCAAATCTTCCCTCGCCGGAACCGCCATCGCCGGAGCAATCTTCTCAACTCTCTGCTCCGGCGATGCCGCCTTCGCCGCGCAGCAAATCGCGGATCTAGCGGAGGGCGACAACCGGGGGCTGGCCCTGTTGCTGCCGCTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAACCAGCTGAACCGGATGCGGACGGAGAAGGCGATGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCCGGGCTGGTCGGGACACCGGAGGCTATGGCGGCAGAGGCTTCGAGCGACGGGCGGGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTTTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCCGAGTGA

Coding sequence (CDS)

ATGGCGGCAACAATGGCGACCATGGCCATCCTCAACGCCAAATGCTTCACTCCCAACAAAATTCCAATCATCCCTTCCAAACCCACGAGACCCATTTCCCTTCCCACCCTCCCACCCAAATCTTCCCTCGCCGGAACCGCCATCGCCGGAGCAATCTTCTCAACTCTCTGCTCCGGCGATGCCGCCTTCGCCGCGCAGCAAATCGCGGATCTAGCGGAGGGCGACAACCGGGGGCTGGCCCTGTTGCTGCCGCTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAACCAGCTGAACCGGATGCGGACGGAGAAGGCGATGATTGTTGGGCTGGGGCTCGGCGGGCTGGCGGCGTCCGGGCTGGTCGGGACACCGGAGGCTATGGCGGCAGAGGCTTCGAGCGACGGGCGGGGACAGCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTTTACAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCCGAGTGA

Protein sequence

MAATMATMAILNAKCFTPNKIPIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCSGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTEKAMIVGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of Lag0039901 vs. NCBI nr
Match: XP_038891337.1 (photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 164/178 (92.13%), Postives = 169/178 (94.94%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNKIPIIPSKPTRPISLPTL--PPKSSLAGTAIAGAIFSTLCS 60
           MAATMATMAILNAKCFTPNK P++PSKPTRPISLP+L  P K SLAGTAIAGAIFST  S
Sbjct: 1   MAATMATMAILNAKCFTPNKTPLLPSKPTRPISLPSLPFPTKPSLAGTAIAGAIFSTFSS 60

Query: 61  GDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTEKAMIVGLG 120
           GDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQ+NRMRTEKA+IVGLG
Sbjct: 61  GDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGLG 120

Query: 121 LGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 177
           LGGL ASGLVGTPEAMAAEASSDGRGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASSDGRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Lag0039901 vs. NCBI nr
Match: XP_022998705.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 292.0 bits (746), Expect = 3.5e-75
Identity = 158/178 (88.76%), Postives = 166/178 (93.26%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNK--IPIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCS 60
           MAATMATMAILNAKCFTPN+  +P++PSKPTRPISLP   PKSSLAG+AIAGAIFST   
Sbjct: 1   MAATMATMAILNAKCFTPNRTPLPLLPSKPTRPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  GDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTEKAMIVGLG 120
            DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQ+NRMRTEKA+I GLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 177
           LGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Lag0039901 vs. NCBI nr
Match: XP_008446112.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo] >KAA0034237.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa] >TYK15683.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 1.0e-74
Identity = 161/179 (89.94%), Postives = 168/179 (93.85%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTP-NKIPI-IPSKPTRPISLP-TLPPKSSLAGTAIAGAIFSTLC 60
           MAATMATMAILNAKCFTP NK P+ +PSKPT+PISLP  +P K SLAGTAIAGAIFSTL 
Sbjct: 1   MAATMATMAILNAKCFTPINKTPVLLPSKPTKPISLPFPIPTKPSLAGTAIAGAIFSTLS 60

Query: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTEKAMIVGL 120
           SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQ+NRMRTEKA+IVGL
Sbjct: 61  SGDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIVGL 120

Query: 121 GLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 177
           GLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Sbjct: 121 GLGGLLASGLVGTPEAMAAEASNDSRGQLLLIVVAPAIAWVLYNILQPALNQLNRMRSE 179

[Close]

BLAST of Lag0039901 vs. NCBI nr
Match: XP_023511769.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 1.7e-74
Identity = 157/178 (88.20%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCS 60
           MAATMATMAILNAKCFTPN+   P++PSKPT P+SLP   PKSSLAG+AIAGAIFSTL  
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPLSLPVPSPKSSLAGSAIAGAIFSTLSF 60

Query: 61  GDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTEKAMIVGLG 120
            DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQ+NRMRTEKA+I GLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 177
           LGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Lag0039901 vs. NCBI nr
Match: XP_022956891.1 (photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 288.5 bits (737), Expect = 3.9e-74
Identity = 157/178 (88.20%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNKI--PIIPSKPTRPISLPTLPPKSSLAGTAIAGAIFSTLCS 60
           MAATMATMAILNAKCFTPN+   P++PSKPT PISLP   PKSSLAG+AIAGAIFST   
Sbjct: 1   MAATMATMAILNAKCFTPNRTPPPLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSF 60

Query: 61  GDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTEKAMIVGLG 120
            DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQ+NRMRTEKA+I GLG
Sbjct: 61  TDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMRTEKAVIAGLG 120

Query: 121 LGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 177
           LGGL ASGLVGTPEAMAAEAS+D RGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Sbjct: 121 LGGLLASGLVGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE 178

[Close]

BLAST of Lag0039901 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-45
Identity = 122/199 (61.31%), Postives = 139/199 (69.85%), Query Frame = 0


Query: 1   MAATMA-TMAILNAKCFT--PNKIPIIPSKPT-RPISLPTLPPKSS---------LAGTA 60
           MAATMA TMA+LN KC T   NK      KPT +PISL  L   +S         +   A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAIFSTLCSGDAAFAAQQIADLA----EGDNRGLALLLPLIPAVAWVLFNILQPALNQ 120
           IAGA+F+TL S D AFA QQ+AD+A      DNRGLALLLP+IPA+ WVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 LNRMRTE-KAMIVGLGLGGLAASG-LVGTPEAMAAE----ASSDGRGQLLLIVVAPAILW 177
           +N+MR E KA IVGLGL GLA SG L+ TPEA AA       SD RG LLL+VV PAI W
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

[Close]

BLAST of Lag0039901 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-43
Identity = 114/191 (59.69%), Postives = 134/191 (70.16%), Query Frame = 0


Query: 1   MAATMATMAILNAKCFTPNKIPIIPSKPTRP---ISLPTLP-PKSSLA--GTAIAGAIFS 60
           MAA MAT      KC + N  P      T+    ISLPT P P  SLA   TA+AGA+FS
Sbjct: 1   MAAAMATA----TKCMSLNPSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTALAGAVFS 60

Query: 61  TLCSGDAAFAAQQIADL----AEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTE 120
           +L   + A A QQIA L    A  DNRGLALLLP++PA+AWVL+NILQPA+NQ+N+MR  
Sbjct: 61  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 120

Query: 121 KAMIVGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVAPAILWVLYNILQ 176
           K ++VGLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVV PA+LWVLYNILQ
Sbjct: 121 KGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWVLYNILQ 180

The following BLAST results are available for this feature:

BLAST of Lag0039901 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891337.1	1.2e-78	92.13	photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida...	[more]
XP_022998705.1	3.5e-75	88.76	photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]	[more]
XP_008446112.1	1.0e-74	89.94	PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumi...	[more]
XP_023511769.1	1.7e-74	88.20	photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo su...	[more]
XP_022956891.1	3.9e-74	88.20	photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschat...	[more]

BLAST of Lag0039901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	1.0e-45	61.31	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	2.8e-43	59.69	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 75..107 e-value: 2.0E-14 score: 53.2 coord: 141..173 e-value: 1.1E-9 score: 38.0
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 75..109 score: 10.897942
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 1..176
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 1..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039901.1	Lag0039901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding