Lag0039805 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039805
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transcription elongation factor B polypeptide 3 isoform X2
Location	chr13: 139103 .. 139759 (+)
RNA-Seq Expression	Lag0039805
Synteny	Lag0039805

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGGTGGAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGTAAGAGGGAGAATGGGAGGAAAGTGGTAATTGAGGAACGGCGAGGATCAAGAATGATTCGCTTGGATGTGGATGTGGGTACTTTCGCTTGGGTCAGGGATTGCCTCATGGCAATAACGAAGTCTGAAAACTTGAACGGATTTTGGAGGAGGAGGAAACTAGAGACAATGATAATCTTTTTCCAGGTTCTATCCAACTAGAAAGGAAGATTTGGGCTCTTATCTCTAGAGTCGAATAGGGGGAGGAAATCTTTTATCTTCATCCCTGAGGGCCCGAATCGCAAAGGTTGGGGGCCGCTTGAGGCAGCCATGACGGATTTGCTTCCCCCACCAAAAGCATCCAACCGGATAGAAAAAGGGCCAGTTAAAGAGAAAGATAGTGGGGATGGCCTAATCGAGTTAGGGGCTCGGAACTCTAAATCTTTTGTGGAAATAGTGAGAAAGGATTCAAAGAAAGGAAACGAGGCGATTAAAAAGTCACCGGTTGTTGGGGAGCTTGTTTTCGATTGTTCTTCTGCGGTCATCATCGAGAGGGTAAACATTGACATTCAGTGGATGGGTATAAAAGAAGAGTGCTTGAGATTTGGCCAAGATAGGGTTCATCCTTAA

mRNA sequence

ATGGATCGGTGGAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGTAAGAGGGAGAATGGGAGGAAAGTGGTAATTGAGGAACGGCGAGGATCAAGAATGATTCGCTTGGATGTGGATGTGGGTACTTTCGCTTGGGTCAGGGATTGCCTCATGGCAATAACGAAGGGGAGGAAATCTTTTATCTTCATCCCTGAGGGCCCGAATCGCAAAGGTTGGGGGCCGCTTGAGGCAGCCATGACGGATTTGCTTCCCCCACCAAAAGCATCCAACCGGATAGAAAAAGGGCCAGTTAAAGAGAAAGATAGTGGGGATGGCCTAATCGAGTTAGGGGCTCGGAACTCTAAATCTTTTGTGGAAATAGTGAGAAAGGATTCAAAGAAAGGAAACGAGGCGATTAAAAAGTCACCGGTTGTTGGGGAGCTTGTTTTCGATTGTTCTTCTGCGGTCATCATCGAGAGGGTAAACATTGACATTCAGTGGATGGGTATAAAAGAAGAGTGCTTGAGATTTGGCCAAGATAGGGTTCATCCTTAA

Coding sequence (CDS)

ATGGATCGGTGGAAGAAGGTGAACATCGATTGGAAGGTGTTTCACCTTCGTAAGAGGGAGAATGGGAGGAAAGTGGTAATTGAGGAACGGCGAGGATCAAGAATGATTCGCTTGGATGTGGATGTGGGTACTTTCGCTTGGGTCAGGGATTGCCTCATGGCAATAACGAAGGGGAGGAAATCTTTTATCTTCATCCCTGAGGGCCCGAATCGCAAAGGTTGGGGGCCGCTTGAGGCAGCCATGACGGATTTGCTTCCCCCACCAAAAGCATCCAACCGGATAGAAAAAGGGCCAGTTAAAGAGAAAGATAGTGGGGATGGCCTAATCGAGTTAGGGGCTCGGAACTCTAAATCTTTTGTGGAAATAGTGAGAAAGGATTCAAAGAAAGGAAACGAGGCGATTAAAAAGTCACCGGTTGTTGGGGAGCTTGTTTTCGATTGTTCTTCTGCGGTCATCATCGAGAGGGTAAACATTGACATTCAGTGGATGGGTATAAAAGAAGAGTGCTTGAGATTTGGCCAAGATAGGGTTCATCCTTAA

Protein sequence

MDRWKKVNIDWKVFHLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAITKGRKSFIFIPEGPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKDSGDGLIELGARNSKSFVEIVRKDSKKGNEAIKKSPVVGELVFDCSSAVIIERVNIDIQWMGIKEECLRFGQDRVHP

Homology

[Close]

BLAST of Lag0039805 vs. NCBI nr
Match: TYK14183.1 (hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-07
Identity = 54/200 (27.00%), Postives = 82/200 (41.00%), Query Frame = 0


Query: 6   KVNIDWKVFHLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAIT--------- 65
           K+ ID K F +      RK+ IEER G    +L++D GT AWVRDCL+            
Sbjct: 3   KLKIDRKEFLVGFMVKARKIYIEERNGRIFGKLELDFGTSAWVRDCLVGAAGANNSMVFW 62

Query: 66  -----------------------------KGRKSFIFIPEGPNRKGWGPLEAAMTDLLPP 125
                                        K RK+ IFIPEG    GW  L   ++ LLP 
Sbjct: 63  QRRLEFAIIFFQVLENEKGRFAILSLESFKERKTRIFIPEGSRGSGWRSLAGEISALLP- 122

Query: 126 PKASNRIEKGPVKEKDSGDGLIELGARNSKSFVEIVRKDSKKGNEAIKKSPVVGELVFDC 168
                    G + +K    G +   A+N ++F  + +   ++ +E+ K      E  F+ 
Sbjct: 123 -------WSGTINQK---TGSMSQPAKNREAFKGLGKMVRRRTDESGKDV----EFAFEW 182

[Close]

BLAST of Lag0039805 vs. NCBI nr
Match: KAA0054521.1 (transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-05
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 0


Query: 15  HLRKRENGRKVVIEERRGSRMIRLDVDVGTFAWVRDCLMAITKGRKSFIF---------- 74
           H R  E GRK+ IEER G R  +L++++GT AWVRDCL+A  +     +F          
Sbjct: 131 HGRSSECGRKICIEERNGERSRKLELELGTSAWVRDCLVAAAELSNPLVFWRRRWLETRV 190

Query: 75  -IPEGPNRKGWGPLEAAMTDLLPPPKASNRIEKGPVKEKDSGDGLIELGARNSKSFVEIV 134
            IP+G N  G  PL A                +  ++ +   +G ++ G    K    +V
Sbjct: 191 LIPDGKNGSGRRPLAA----------------EASLEGRAGSEGSLKSG----KELDAVV 250

Query: 135 RKDSKK----GNEAIKKSPVVGELVFDCSSAVIIERVNIDIQ 162
           + D  K    G+   KK     +L  DC + VII+  +  ++
Sbjct: 251 KADCSKVESEGSPEDKKWEF--DLRSDCEATVIIKMTSAAVE 270

The following BLAST results are available for this feature:

BLAST of Lag0039805 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14183.1	4.2e-07	27.00	hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]	[more]
KAA0054521.1	3.9e-05	29.01	transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. ma...	[more]

BLAST of Lag0039805 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039805.1	Lag0039805.1	mRNA