Lag0039770 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039770
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr2: 49607430 .. 49608554 (-)
RNA-Seq Expression	Lag0039770
Synteny	Lag0039770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTGGAAGTTTCAATTTTCATCAATGTTGCGTGCACACAAACTTTTTGGTTTGTTGATGGCTCTAACAAGGCTCCGCCGAAGACTCTTTCTGCTGGATCATCTACTACATCGTCTTCCTCTGAATCTTCTGCTCCTGATCTTAATCCTGAGTATGAAGATTGGCTTGCTAAGGATCAAGCTTTGATGACTTTGATCAATGCTACACTGTCTACGGAAGCCCTAGCCTACATCGTTGGTTGTAATTCTTCAAGAGAGAAGTGGGAAGCCCTAGAAAAACACTATTCTTCTTCGACTCGGTCGAATATTGTCAATCTTAAGACTGATTTGCAGTCTATCACGAAGAAATCGGATGAATCTGTTGATTCATACATCAAGCGCATCAAAGAAATAAAGGACAAACTTGCAAATGTTTCGTCAGTGGTCAATGATGAGGATCTTCTCATCTATACACTCAATGGACTTCCTGTTGAGTACAATACATTTTGCAGTTCTATGCGAATCAGGTCTCAATCCGTTACGTTCGCTGAATTACCTGTCTTACTCAAAGCAGAGGAATCAGCGATTGAAAAACAAGCCAAACGAGAGGATCTGGTTGTTCAACCTACAACGATGCTTGCCTCTTCAGCCAATCAGTTTTGTCCGCCTCCATCATCCTCTTCTCAGTCTTCCTTTCGTGGTCGTGGTCGAGGAGGACGTAATTCAGTACGAGGTCGGAATTCTAGCACTTTTACTTCTCCTAGACGAGGTCGGGGTTTTCCTAATTCTTCGCCATCATCTGTTGATTTTCCAACGGCTTGTCAGATCTGTCACCGACCTGGTCATATGGCTCTCGATTGTTACAATCGAATGAACTACAATTTTCAAGGCAGGCATCCTCCTCCTCAGTTAGCTGCAATGGTAGCCACACAGAATCATCAGTATATATCTACTCAGCATAATCAATTTTCTCCCACCTCTGCGGTTGGATCTCCATGGCTTGCTGATTCTGGATGCAACACTCATGTTACATCAGACCTGTCGAATTTGGCCATCTCCTCTGAGTACAACGATGAAGAAAATGTTGCTGTTGGTAACTGTTGCACGATTTTATACCGCAAGCGTACGGGTCGTCACAAGTAA

mRNA sequence

ATGTTTGTGGAAGTTTCAATTTTCATCAATGTTGCGTGCACACAAACTTTTTGGTTTGTTGATGGCTCTAACAAGGCTCCGCCGAAGACTCTTTCTGCTGGATCATCTACTACATCGTCTTCCTCTGAATCTTCTGCTCCTGATCTTAATCCTGAGTATGAAGATTGGCTTGCTAAGGATCAAGCTTTGATGACTTTGATCAATGCTACACTGTCTACGGAAGCCCTAGCCTACATCGTTGGTTGTAATTCTTCAAGAGAGAAGTGGGAAGCCCTAGAAAAACACTATTCTTCTTCGACTCGGTCGAATATTGTCAATCTTAAGACTGATTTGCAGTCTATCACGAAGAAATCGGATGAATCTGTTGATTCATACATCAAGCGCATCAAAGAAATAAAGGACAAACTTGCAAATGTTTCGTCAGTGGTCAATGATGAGGATCTTCTCATCTATACACTCAATGGACTTCCTGTTGAGTACAATACATTTTGCAGTTCTATGCGAATCAGGTCTCAATCCGTTACGTTCGCTGAATTACCTGTCTTACTCAAAGCAGAGGAATCAGCGATTGAAAAACAAGCCAAACGAGAGGATCTGGTTGTTCAACCTACAACGATGCTTGCCTCTTCAGCCAATCAGTTTTGTCCGCCTCCATCATCCTCTTCTCAGTCTTCCTTTCGTGGTCGTGGTCGAGGAGGACGTAATTCAGTACGAGGTCGGAATTCTAGCACTTTTACTTCTCCTAGACGAGGTCGGGGTTTTCCTAATTCTTCGCCATCATCTGTTGATTTTCCAACGGCTTGTCAGATCTGTCACCGACCTGGTCATATGGCTCTCGATTGTTACAATCGAATGAACTACAATTTTCAAGGCAGGCATCCTCCTCCTCAGTTAGCTGCAATGGTAGCCACACAGAATCATCAGTATATATCTACTCAGCATAATCAATTTTCTCCCACCTCTGCGGTTGGATCTCCATGGCTTGCTGATTCTGGATGCAACACTCATGTTACATCAGACCTGTCGAATTTGGCCATCTCCTCTGAGTACAACGATGAAGAAAATGTTGCTGTTGGTAACTGTTGCACGATTTTATACCGCAAGCGTACGGGTCGTCACAAGTAA

Coding sequence (CDS)

ATGTTTGTGGAAGTTTCAATTTTCATCAATGTTGCGTGCACACAAACTTTTTGGTTTGTTGATGGCTCTAACAAGGCTCCGCCGAAGACTCTTTCTGCTGGATCATCTACTACATCGTCTTCCTCTGAATCTTCTGCTCCTGATCTTAATCCTGAGTATGAAGATTGGCTTGCTAAGGATCAAGCTTTGATGACTTTGATCAATGCTACACTGTCTACGGAAGCCCTAGCCTACATCGTTGGTTGTAATTCTTCAAGAGAGAAGTGGGAAGCCCTAGAAAAACACTATTCTTCTTCGACTCGGTCGAATATTGTCAATCTTAAGACTGATTTGCAGTCTATCACGAAGAAATCGGATGAATCTGTTGATTCATACATCAAGCGCATCAAAGAAATAAAGGACAAACTTGCAAATGTTTCGTCAGTGGTCAATGATGAGGATCTTCTCATCTATACACTCAATGGACTTCCTGTTGAGTACAATACATTTTGCAGTTCTATGCGAATCAGGTCTCAATCCGTTACGTTCGCTGAATTACCTGTCTTACTCAAAGCAGAGGAATCAGCGATTGAAAAACAAGCCAAACGAGAGGATCTGGTTGTTCAACCTACAACGATGCTTGCCTCTTCAGCCAATCAGTTTTGTCCGCCTCCATCATCCTCTTCTCAGTCTTCCTTTCGTGGTCGTGGTCGAGGAGGACGTAATTCAGTACGAGGTCGGAATTCTAGCACTTTTACTTCTCCTAGACGAGGTCGGGGTTTTCCTAATTCTTCGCCATCATCTGTTGATTTTCCAACGGCTTGTCAGATCTGTCACCGACCTGGTCATATGGCTCTCGATTGTTACAATCGAATGAACTACAATTTTCAAGGCAGGCATCCTCCTCCTCAGTTAGCTGCAATGGTAGCCACACAGAATCATCAGTATATATCTACTCAGCATAATCAATTTTCTCCCACCTCTGCGGTTGGATCTCCATGGCTTGCTGATTCTGGATGCAACACTCATGTTACATCAGACCTGTCGAATTTGGCCATCTCCTCTGAGTACAACGATGAAGAAAATGTTGCTGTTGGTAACTGTTGCACGATTTTATACCGCAAGCGTACGGGTCGTCACAAGTAA

Protein sequence

MFVEVSIFINVACTQTFWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEALAYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKLANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKREDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPNSSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQFSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGNCCTILYRKRTGRHK

Homology

[Close]

BLAST of Lag0039770 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 357.1 bits (915), Expect = 1.9e-94
Identity = 205/356 (57.58%), Postives = 261/356 (73.31%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSS-SSESSAPDLNPEYEDWLAKDQALMTLINATLSTEA 76
           F F+DGS  AP + L++ S T S  ++ +S P +NP +EDW+AKDQALMTLINATLS EA
Sbjct: 73  FGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEA 132

Query: 77  LAYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDK 136
           LAY+V   +S++ WE LEKHYSS++R+N+VNLK+DLQSI KK++ES+D+Y+KRIKEIKDK
Sbjct: 133 LAYVVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDK 192

Query: 137 LANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAK 196
            ANVS  +NDE LLIY LNGL  EYNT  +SMR R+QSV+F EL V +K+EESAIEKQ K
Sbjct: 193 FANVSITINDEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMK 252

Query: 197 REDLVVQPTTMLASSANQFCPPPSSSSQSSF-----RGRGRGGRNSVRGRN--SSTFTSP 256
           REDLV QP  + ASS      P S +  S+F       RGR G+N+ RG+   + TFT+ 
Sbjct: 253 REDLVTQPNALFASS------PQSQNRTSAFHPNQSHDRGR-GKNNGRGKANFAPTFTNQ 312

Query: 257 RRGRGFPNSSPS-SVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNH 316
            RGR   N   S   D  + CQIC + GH ALDCYNRMN++FQGRHPPPQLAAMVA QN+
Sbjct: 313 GRGRSSGNFFTSFQADNRSPCQICGKLGHTALDCYNRMNFHFQGRHPPPQLAAMVAVQNN 372

Query: 317 QYISTQHNQFSPTSAVGSPWLADSGCNTHVTSDLSNL---AISSEYNDEENVAVGN 361
            Y++  ++  SPT+     WLADS CNTH+T+DLSNL   +I+S+YN EEN++VG+
Sbjct: 373 SYLAVGNS--SPTT-----WLADSECNTHMTADLSNLSIASIASDYNGEENISVGS 414

[Close]

BLAST of Lag0039770 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.3e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.3e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 342.0 bits (876), Expect = 6.3e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 6.3e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.0e-19
Identity = 86/353 (24.36%), Postives = 154/353 (43.63%), Query Frame = 0


Query: 19  FVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEALAY 78
           F+DGS   PP T+             +AP +NP+Y  W  +D+ + + +   +S      
Sbjct: 50  FLDGSTTMPPATIGT----------DAAPRVNPDYTRWKRQDKLIYSAVLGAISMSVQPA 109

Query: 79  IVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKLAN 138
           +    ++ + WE L K Y++ +  ++  L+T L+  T K  +++D Y++ +    D+LA 
Sbjct: 110 VSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWT-KGTKTIDDYMQGLVTRFDQLAL 169

Query: 139 VSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKRED 198
           +   ++ ++ +   L  LP EY      +  +    T  E+   L   ES I        
Sbjct: 170 LGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLTEIHERLLNHESKI-------- 229

Query: 199 LVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPNSS 258
           L V   T++  +AN      ++++ ++  G  R  R   R  N+++    +    F  ++
Sbjct: 230 LAVSSATVIPITANAVSHRNTTTTNNNNNG-NRNNRYDNRNNNNNSKPWQQSSTNFHPNN 289

Query: 259 PSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQFS 318
             S  +   CQIC   GH A  C               QL   +++ N Q   +    + 
Sbjct: 290 NQSKPYLGKCQICGVQGHSAKRC--------------SQLQHFLSSVNSQQPPSPFTPWQ 349

Query: 319 PTS--AVGSP-----WLADSGCNTHVTSDLSNLAISSEYNDEENVAVGNCCTI 365
           P +  A+GSP     WL DSG   H+TSD +NL++   Y   ++V V +  TI
Sbjct: 350 PRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTI 368

[Close]

BLAST of Lag0039770 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-11
Identity = 76/353 (21.53%), Postives = 140/353 (39.66%), Query Frame = 0


Query: 19  FVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEALAY 78
           F+DGS   PP T+             + P +NP+Y  W  +D+ + + I   +S      
Sbjct: 50  FLDGSTPMPPATIGT----------DAVPRVNPDYTRWRRQDKLIYSAILGAISMSVQPA 109

Query: 79  IVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKLAN 138
           +    ++ + WE L K Y++ +  ++  L+                +I R     D+LA 
Sbjct: 110 VSRATTAAQIWETLRKIYANPSYGHVTQLR----------------FITRF----DQLAL 169

Query: 139 VSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKRED 198
           +   ++ ++ +   L  LP +Y      +  +         P L +  E  I +++K   
Sbjct: 170 LGKPMDHDEQVERVLENLPDDYKPVIDQIAAKDTP------PSLTEIHERLINRESKL-- 229

Query: 199 LVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPNSS 258
           L +    ++  +AN      ++++++      RG   +    N+ + +      G  + +
Sbjct: 230 LALNSAEVVPITANVVTHRNTNTNRNQ---NNRGDNRNYNNNNNRSNSWQPSSSGSRSDN 289

Query: 259 PSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQFS 318
                +   CQIC   GH A  C              PQL    +T N Q  ++    + 
Sbjct: 290 RQPKPYLGRCQICSVQGHSAKRC--------------PQLHQFQSTTNQQQSTSPFTPWQ 347

Query: 319 PTS--AVGSP-----WLADSGCNTHVTSDLSNLAISSEYNDEENVAVGNCCTI 365
           P +  AV SP     WL DSG   H+TSD +NL+    Y   ++V + +  TI
Sbjct: 350 PRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTI 347

[Close]

BLAST of Lag0039770 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 9.2e-95
Identity = 205/356 (57.58%), Postives = 261/356 (73.31%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSS-SSESSAPDLNPEYEDWLAKDQALMTLINATLSTEA 76
           F F+DGS  AP + L++ S T S  ++ +S P +NP +EDW+AKDQALMTLINATLS EA
Sbjct: 73  FGFIDGSVSAPSQFLASSSETESQPTTTTSLPVINPHFEDWIAKDQALMTLINATLSAEA 132

Query: 77  LAYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDK 136
           LAY+V   +S++ WE LEKHYSS++R+N+VNLK+DLQSI KK++ES+D+Y+KRIKEIKDK
Sbjct: 133 LAYVVRSGTSKQVWEVLEKHYSSNSRTNVVNLKSDLQSIVKKTEESIDAYVKRIKEIKDK 192

Query: 137 LANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAK 196
            ANVS  +NDE LLIY LNGL  EYNT  +SMR R+QSV+F EL V +K+EESAIEKQ K
Sbjct: 193 FANVSITINDEYLLIYALNGLSTEYNTLSTSMRTRAQSVSFEELHVFMKSEESAIEKQMK 252

Query: 197 REDLVVQPTTMLASSANQFCPPPSSSSQSSF-----RGRGRGGRNSVRGRN--SSTFTSP 256
           REDLV QP  + ASS      P S +  S+F       RGR G+N+ RG+   + TFT+ 
Sbjct: 253 REDLVTQPNALFASS------PQSQNRTSAFHPNQSHDRGR-GKNNGRGKANFAPTFTNQ 312

Query: 257 RRGRGFPNSSPS-SVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNH 316
            RGR   N   S   D  + CQIC + GH ALDCYNRMN++FQGRHPPPQLAAMVA QN+
Sbjct: 313 GRGRSSGNFFTSFQADNRSPCQICGKLGHTALDCYNRMNFHFQGRHPPPQLAAMVAVQNN 372

Query: 317 QYISTQHNQFSPTSAVGSPWLADSGCNTHVTSDLSNL---AISSEYNDEENVAVGN 361
            Y++  ++  SPT+     WLADS CNTH+T+DLSNL   +I+S+YN EEN++VG+
Sbjct: 373 SYLAVGNS--SPTT-----WLADSECNTHMTADLSNLSIASIASDYNGEENISVGS 414

[Close]

BLAST of Lag0039770 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.0e-90
Identity = 191/344 (55.52%), Postives = 238/344 (69.19%), Query Frame = 0


Query: 17  FWFVDGSNKAPPKTLSAGSSTTSSSSESSAPDLNPEYEDWLAKDQALMTLINATLSTEAL 76
           + F+DG+N  PP+T        SSS+ +  P  NP YEDW+AKDQALMT+INATLS EAL
Sbjct: 56  YGFIDGTNPCPPRT------NNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEAL 115

Query: 77  AYIVGCNSSREKWEALEKHYSSSTRSNIVNLKTDLQSITKKSDESVDSYIKRIKEIKDKL 136
           AY+VG  SS++ W+ L K YSS +RSN+VNLK+DLQ+I KK DES+D+YIKRIKEIKDKL
Sbjct: 116 AYVVGSTSSKQVWDVLAKLYSSGSRSNVVNLKSDLQTIYKKPDESIDAYIKRIKEIKDKL 175

Query: 137 ANVSSVVNDEDLLIYTLNGLPVEYNTFCSSMRIRSQSVTFAELPVLLKAEESAIEKQAKR 196
           ANVS+ +N+EDLLIY LNGLP EYNTF +SMR RSQ VTF EL VLL+AEESA+ KQ+K 
Sbjct: 176 ANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESALAKQSKG 235

Query: 197 EDLVVQPTTMLASSANQFCPPPSSSSQSSFRGRGRGGRNSVRGRNSSTFTSPRRGRGFPN 256
           +D   QPT +L+SS +     P+  + +  RG G G      G    +F +  RG G   
Sbjct: 236 DDSYNQPTVLLSSSQSLLSCAPTFDN-NFVRGNGHGKH---YGHGRFSFDAQTRGHGSSP 295

Query: 257 SSPSSVDFPTACQICHRPGHMALDCYNRMNYNFQGRHPPPQLAAMVATQNHQYISTQHNQ 316
              S  D    CQIC R GH ALDC+NRMNYNFQGRHPP QLAAMVA+QN+ ++      
Sbjct: 296 EQKSVHDNHATCQICSRRGHTALDCFNRMNYNFQGRHPPQQLAAMVASQNNAFL------ 355

Query: 317 FSPTSAVGSPWLADSGCNTHVTSDLSNLAISSEYNDEENVAVGN 361
               S V S  L DSGCNT +TSD++ ++++ EYN EE V +GN
Sbjct: 356 ----SIVNSSSLTDSGCNTRITSDMNYVSLAPEYNGEEQVGIGN 379

[Close]

BLAST of Lag0039770 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-08
Identity = 57/226 (25.22%), Postives = 105/226 (46.46%), Query Frame = 0


Query: 44  SSAPDLNPEYEDWLAKDQALMTLINATLSTEALAYIVGCNSSREKWEALEKHYSSSTRSN 103
           ++A D+N +  D + K    ++L       +     V  ++SR+ W  ++  + ++  + 
Sbjct: 58  TNANDVNWQKRDGIVK----LSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDAR 117

Query: 104 IVNLKTDLQSITKKSDESVDSYIKRIKEIKDKLANVSSVVNDEDLLIYTLNGLPVEYNTF 163
            + L ++L++     D  V  Y +++K++ D L NV   V D +L++Y LNGL  +++  
Sbjct: 118 ALRLDSELRT-KDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNI 177

Query: 164 CSSMRIRSQSVTFAELPVLLKAEESAIEKQAKREDLVVQPTTMLASSANQFCPP-----P 223
            + ++ R    +F +   +L+ EE  +++  K     V  ++     A    PP      
Sbjct: 178 INVIKHRQPFPSFDDAATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQR 237

Query: 224 SSSSQSSFRGRGRGGRNSVRGR-------NSSTFTSPRRGRGFPNS 258
           S  +Q  +RGRGR G N  RGR       N  TF S  R   + NS
Sbjct: 238 SGGNQMGYRGRGR-GNNIFRGRGGRFSYYNMPTFNSWNRPPFYQNS 277

The following BLAST results are available for this feature:

BLAST of Lag0039770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150845.1	1.9e-94	57.58	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
XP_008448007.1	6.3e-90	55.52	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	6.3e-90	55.52	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	6.3e-90	55.52	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]
XP_016900446.1	6.3e-90	55.52	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]

BLAST of Lag0039770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	6.0e-19	24.36	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	3.6e-11	21.53	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Lag0039770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9L6	9.2e-95	57.58	uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5D3CLI6	3.0e-90	55.52	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	3.0e-90	55.52	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	3.0e-90	55.52	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	3.0e-90	55.52	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lag0039770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	2.9e-08	25.22	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 56..189 e-value: 3.9E-25 score: 88.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 210..262
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 16..353
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 16..353

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039770.1	Lag0039770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding