Lag0039754 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039754
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr2: 49391709 .. 49392512 (+)
RNA-Seq Expression	Lag0039754
Synteny	Lag0039754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCGTCTTCCAGTACCTCATCCACCGGCAATGACAACGTACCTGAGTTACCAGACCTACCCTCTTCCTCTATCAATACAACCATTCCTGTGACAGCTTTTGCCTCCACTGTTACCACTCTACCGTCGACGCCTGTCAACCTCTCTCTGCGGCCAGGTGTGAATCCCTCCCAAAGACACAACACTTCCCCCAATCCCAAGTTTTCAGGCTTTCCCTCTCGACCATTGAACCCTAATCAGCCTCTATTCTACTTGAATGTTAATCATCAGCCCTTTTCCTCTTCTTTTTCTTTTCCCCAGTCGTCTGTTCCAGCTGGGTTTCGATATCCTCCCCCCACCTCTTCTTCCTTGCCCTTCTTTCCTACTCACAACAATGGCAACCCTTTCTTTCCCTCTCCCCAGCCAACCAACACCCCCTACCCGACTCTCACACCGCCGCTCAACATCAAACTCTCTGATACCAACTATTTACTCTGGAAGAATCAACTTCTTAATCATATTATTGCATTTGATATGGAAGCCTTCATCAATGGAACTCCTCCTCCTCCGAAATTTCTGGATGCTGCTGAATCCCAGGTAAATCCCTTATTTCTTATCTGGCAAAAATATAATAGAACTTTGATGAGTTGGATCTGCTCCTCCCTGAATGAAGATAAGCTAGGTGAGATTATTGGCTGCTCCATTGCGTTTGAAATATGGGAGCACCTCAGAACTGTGTATGAATCTTCTTCCACGGCTCGTCTTATGGGTCTTTGTTCTCAGCTTCAGAAGATTCGTAAAGATGGTTTATCAGTGACTTAA

mRNA sequence

ATGGCCTCGTCTTCCAGTACCTCATCCACCGGCAATGACAACGTACCTGAGTTACCAGACCTACCCTCTTCCTCTATCAATACAACCATTCCTGTGACAGCTTTTGCCTCCACTGTTACCACTCTACCGTCGACGCCTGTCAACCTCTCTCTGCGGCCAGGTGTGAATCCCTCCCAAAGACACAACACTTCCCCCAATCCCAAGTTTTCAGGCTTTCCCTCTCGACCATTGAACCCTAATCAGCCTCTATTCTACTTGAATGTTAATCATCAGCCCTTTTCCTCTTCTTTTTCTTTTCCCCAGTCGTCTGTTCCAGCTGGGTTTCGATATCCTCCCCCCACCTCTTCTTCCTTGCCCTTCTTTCCTACTCACAACAATGGCAACCCTTTCTTTCCCTCTCCCCAGCCAACCAACACCCCCTACCCGACTCTCACACCGCCGCTCAACATCAAACTCTCTGATACCAACTATTTACTCTGGAAGAATCAACTTCTTAATCATATTATTGCATTTGATATGGAAGCCTTCATCAATGGAACTCCTCCTCCTCCGAAATTTCTGGATGCTGCTGAATCCCAGGTAAATCCCTTATTTCTTATCTGGCAAAAATATAATAGAACTTTGATGAGTTGGATCTGCTCCTCCCTGAATGAAGATAAGCTAGGTGAGATTATTGGCTGCTCCATTGCGTTTGAAATATGGGAGCACCTCAGAACTGTGTATGAATCTTCTTCCACGGCTCGTCTTATGGGTCTTTGTTCTCAGCTTCAGAAGATTCGTAAAGATGGTTTATCAGTGACTTAA

Coding sequence (CDS)

ATGGCCTCGTCTTCCAGTACCTCATCCACCGGCAATGACAACGTACCTGAGTTACCAGACCTACCCTCTTCCTCTATCAATACAACCATTCCTGTGACAGCTTTTGCCTCCACTGTTACCACTCTACCGTCGACGCCTGTCAACCTCTCTCTGCGGCCAGGTGTGAATCCCTCCCAAAGACACAACACTTCCCCCAATCCCAAGTTTTCAGGCTTTCCCTCTCGACCATTGAACCCTAATCAGCCTCTATTCTACTTGAATGTTAATCATCAGCCCTTTTCCTCTTCTTTTTCTTTTCCCCAGTCGTCTGTTCCAGCTGGGTTTCGATATCCTCCCCCCACCTCTTCTTCCTTGCCCTTCTTTCCTACTCACAACAATGGCAACCCTTTCTTTCCCTCTCCCCAGCCAACCAACACCCCCTACCCGACTCTCACACCGCCGCTCAACATCAAACTCTCTGATACCAACTATTTACTCTGGAAGAATCAACTTCTTAATCATATTATTGCATTTGATATGGAAGCCTTCATCAATGGAACTCCTCCTCCTCCGAAATTTCTGGATGCTGCTGAATCCCAGGTAAATCCCTTATTTCTTATCTGGCAAAAATATAATAGAACTTTGATGAGTTGGATCTGCTCCTCCCTGAATGAAGATAAGCTAGGTGAGATTATTGGCTGCTCCATTGCGTTTGAAATATGGGAGCACCTCAGAACTGTGTATGAATCTTCTTCCACGGCTCGTCTTATGGGTCTTTGTTCTCAGCTTCAGAAGATTCGTAAAGATGGTTTATCAGTGACTTAA

Protein sequence

MASSSSTSSTGNDNVPELPDLPSSSINTTIPVTAFASTVTTLPSTPVNLSLRPGVNPSQRHNTSPNPKFSGFPSRPLNPNQPLFYLNVNHQPFSSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT

Homology

[Close]

BLAST of Lag0039754 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 155.6 bits (392), Expect = 6.0e-34
Identity = 77/160 (48.12%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 109 RYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHI 168
           ++PPPT + L   P     NPF      +  P+PTL  PLN+KL+D N+LLWKNQLLN +
Sbjct: 2   QFPPPTPNFLAQPP-----NPF------SANPFPTLPQPLNVKLNDNNFLLWKNQLLNAV 61

Query: 169 IAFDMEAFINGT-PPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGC 228
           IA  +  +++GT  PPP+FLD  + Q NP +  W++YNR LM WI SSL+E+K+GE++  
Sbjct: 62  IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 121

Query: 229 SIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT 268
               +IW  L  VY+S +TAR+MGL ++LQ +RKDG SV+
Sbjct: 122 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVS 150

[Close]

BLAST of Lag0039754 vs. NCBI nr
Match: RVW56403.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 136.3 bits (342), Expect = 3.7e-28
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 116 SSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEA 175
           ++L   P + N  P F SP  T   YP+L+ PL IKL +TN  LWKNQLLN IIA  +E 
Sbjct: 9   TTLTINPQNINPTPIF-SPNITQANYPSLSQPLTIKLDETNLFLWKNQLLNVIIANGLED 68

Query: 176 FING-TPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIW 235
           FI G TP P KFLD A+ QVNPLF+ W++ N  +MSWI  SL    +G I+    A EIW
Sbjct: 69  FIEGETPIPAKFLDDAQLQVNPLFIQWERTNILVMSWIYYSLTPAMVGRIVEYKTAQEIW 128

Query: 236 EHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT 268
             L  VY+S S   ++ L SQLQKI+K+G++++
Sbjct: 129 GALNRVYQSPSVTTVLRLNSQLQKIKKEGITIS 160

[Close]

BLAST of Lag0039754 vs. NCBI nr
Match: GFY85402.1 (hypothetical protein Acr_04g0001400 [Actinidia rufa])

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-27
Identity = 78/177 (44.07%), Postives = 110/177 (62.15%), Query Frame = 0


Query: 94  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLN 153
           +SS +   S+ PA    PPPTS+ LP     N      P+PQ  NT      P++  PL 
Sbjct: 2   ASSTTDSASTPPAP---PPPTSNPLPSSSIPN------PNPQILNTSPLPNMPSINQPLA 61

Query: 154 IKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYNRTL 213
           +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  + Q NP F  WQ+YNR +
Sbjct: 62  VKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLV 121

Query: 214 MSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS 266
           MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Sbjct: 122 MSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLT 169

[Close]

BLAST of Lag0039754 vs. NCBI nr
Match: GFZ12741.1 (UBX domain-containing protein [Actinidia rufa])

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-27
Identity = 77/177 (43.50%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 94  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLN 153
           +SS +   S+ PA    PPPTS+ LP      + +   P+PQ  NT      P++  PL 
Sbjct: 2   ASSTTDSSSTPPAP---PPPTSNPLP------SSSIPKPNPQIINTSPLLNMPSINQPLA 61

Query: 154 IKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYNRTL 213
           +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  + Q NP F  WQ+YNR +
Sbjct: 62  VKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLV 121

Query: 214 MSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS 266
           MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Sbjct: 122 MSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLT 169

[Close]

BLAST of Lag0039754 vs. NCBI nr
Match: PON47862.1 (hypothetical protein TorRG33x02_321990 [Trema orientale])

HSP 1 Score: 132.9 bits (333), Expect = 4.1e-27
Identity = 71/160 (44.38%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 125 NNGNPFFPSPQPTNTP------------------YPTLTPPLNIKLSDTNYLLWKNQLLN 184
           + GNP    P PTN P                   P++  P  IKL   NYL+WKNQLLN
Sbjct: 12  STGNPTIQMP-PTNIPNVQDQIIGAQPPLPPLPILPSMNQPFTIKLDADNYLIWKNQLLN 71

Query: 185 HIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEII 244
            IIA  +E FI+G+ P PP+F D A   VN  ++ WQ++NR +MSWI +SL +  +G+I+
Sbjct: 72  VIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIV 131

Query: 245 GCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS 266
           G + AFEIWE L  +Y SSS A++  L ++LQ +RKDGL+
Sbjct: 132 GYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLT 170

[Close]

BLAST of Lag0039754 vs. ExPASy TrEMBL
Match: A0A6J1DQX7 (uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022315 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.9e-34
Identity = 77/160 (48.12%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 109 RYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHI 168
           ++PPPT + L   P     NPF      +  P+PTL  PLN+KL+D N+LLWKNQLLN +
Sbjct: 2   QFPPPTPNFLAQPP-----NPF------SANPFPTLPQPLNVKLNDNNFLLWKNQLLNAV 61

Query: 169 IAFDMEAFINGT-PPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGC 228
           IA  +  +++GT  PPP+FLD  + Q NP +  W++YNR LM WI SSL+E+K+GE++  
Sbjct: 62  IANGLRGYLDGTIMPPPQFLDHHQLQPNPAYYAWERYNRLLMCWIYSSLSEEKMGEVVSL 121

Query: 229 SIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT 268
               +IW  L  VY+S +TAR+MGL ++LQ +RKDG SV+
Sbjct: 122 ETTHDIWSSLTRVYDSKTTARIMGLKTELQNLRKDGSSVS 150

[Close]

BLAST of Lag0039754 vs. ExPASy TrEMBL
Match: A0A438F8X3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2675 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 116 SSLPFFPTHNNGNPFFPSPQPTNTPYPTLTPPLNIKLSDTNYLLWKNQLLNHIIAFDMEA 175
           ++L   P + N  P F SP  T   YP+L+ PL IKL +TN  LWKNQLLN IIA  +E 
Sbjct: 9   TTLTINPQNINPTPIF-SPNITQANYPSLSQPLTIKLDETNLFLWKNQLLNVIIANGLED 68

Query: 176 FING-TPPPPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEIIGCSIAFEIW 235
           FI G TP P KFLD A+ QVNPLF+ W++ N  +MSWI  SL    +G I+    A EIW
Sbjct: 69  FIEGETPIPAKFLDDAQLQVNPLFIQWERTNILVMSWIYYSLTPAMVGRIVEYKTAQEIW 128

Query: 236 EHLRTVYESSSTARLMGLCSQLQKIRKDGLSVT 268
             L  VY+S S   ++ L SQLQKI+K+G++++
Sbjct: 129 GALNRVYQSPSVTTVLRLNSQLQKIKKEGITIS 160

[Close]

BLAST of Lag0039754 vs. ExPASy TrEMBL
Match: A0A7J0EGI5 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.9e-28
Identity = 78/177 (44.07%), Postives = 110/177 (62.15%), Query Frame = 0


Query: 94  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLN 153
           +SS +   S+ PA    PPPTS+ LP     N      P+PQ  NT      P++  PL 
Sbjct: 2   ASSTTDSASTPPAP---PPPTSNPLPSSSIPN------PNPQILNTSPLPNMPSINQPLA 61

Query: 154 IKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYNRTL 213
           +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  + Q NP F  WQ+YNR +
Sbjct: 62  VKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLV 121

Query: 214 MSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS 266
           MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Sbjct: 122 MSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLT 169

[Close]

BLAST of Lag0039754 vs. ExPASy TrEMBL
Match: A0A7J0GPN0 (UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 77/177 (43.50%), Postives = 111/177 (62.71%), Query Frame = 0


Query: 94  SSSFSFPQSSVPAGFRYPPPTSSSLPFFPTHNNGNPFFPSPQPTNTP----YPTLTPPLN 153
           +SS +   S+ PA    PPPTS+ LP      + +   P+PQ  NT      P++  PL 
Sbjct: 2   ASSTTDSSSTPPAP---PPPTSNPLP------SSSIPKPNPQIINTSPLLNMPSINQPLA 61

Query: 154 IKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYNRTL 213
           +KL D NY++WK QLLN +IA  +E F++G+   PP+FLD  + Q NP F  WQ+YNR +
Sbjct: 62  VKLDDHNYIIWKEQLLNIVIANGLEEFLDGSRVCPPRFLDPQQQQSNPEFHSWQRYNRLV 121

Query: 214 MSWICSSLNEDKLGEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS 266
           MSWI +S+NE  LG+I+G + A +IWE L  +Y ++S A L  L + LQ I+K+GL+
Sbjct: 122 MSWIYASINESMLGQIVGYTSASQIWEALERLYAAASFAHLTELRTALQTIKKEGLT 169

[Close]

BLAST of Lag0039754 vs. ExPASy TrEMBL
Match: A0A2P5BGF8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-27
Identity = 71/160 (44.38%), Postives = 97/160 (60.62%), Query Frame = 0


Query: 125 NNGNPFFPSPQPTNTP------------------YPTLTPPLNIKLSDTNYLLWKNQLLN 184
           + GNP    P PTN P                   P++  P  IKL   NYL+WKNQLLN
Sbjct: 12  STGNPTIQMP-PTNIPNVQDQIIGAQPPLPPLPILPSMNQPFTIKLDADNYLIWKNQLLN 71

Query: 185 HIIAFDMEAFINGTPP-PPKFLDAAESQVNPLFLIWQKYNRTLMSWICSSLNEDKLGEII 244
            IIA  +E FI+G+ P PP+F D A   VN  ++ WQ++NR +MSWI +SL +  +G+I+
Sbjct: 72  VIIANGLEDFIDGSRPCPPRFTDPARQIVNAEYIAWQRFNRLIMSWIYASLTQGVMGQIV 131

Query: 245 GCSIAFEIWEHLRTVYESSSTARLMGLCSQLQKIRKDGLS 266
           G + AFEIWE L  +Y SSS A++  L ++LQ +RKDGL+
Sbjct: 132 GYASAFEIWEALNQIYTSSSLAKITELRAKLQNLRKDGLT 170

[Close]

BLAST of Lag0039754 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-05
Identity = 27/112 (24.11%), Postives = 54/112 (48.21%), Query Frame = 0


Query: 147 PLNIKLSDTNYLLWKNQLLNHIIAFDMEAFINGTPPPPKFLDAAESQVNPLFLIWQKYNR 206
           P+ + + ++NY  W+   L H ++FD+   I+GT      L    + VN     WQK + 
Sbjct: 21  PVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT-----LLPTNANDVN-----WQKRDG 80

Query: 207 TLMSWICSSLNEDKL-GEIIGCSIAFEIWEHLRTVYESSSTARLMGLCSQLQ 258
            +   +  +L   +  G  +  S + +IW  ++  + ++  AR + L S+L+
Sbjct: 81  IVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELR 122

The following BLAST results are available for this feature:

BLAST of Lag0039754 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155181.1	6.0e-34	48.13	uncharacterized protein LOC111022315 [Momordica charantia]	[more]
RVW56403.1	3.7e-28	49.02	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
GFY85402.1	1.4e-27	44.07	hypothetical protein Acr_04g0001400 [Actinidia rufa]	[more]
GFZ12741.1	4.1e-27	43.50	UBX domain-containing protein [Actinidia rufa]	[more]
PON47862.1	4.1e-27	44.38	hypothetical protein TorRG33x02_321990 [Trema orientale]	[more]

BLAST of Lag0039754 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0039754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQX7	2.9e-34	48.13	uncharacterized protein LOC111022315 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A438F8X3	1.8e-28	49.02	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A7J0EGI5	6.9e-28	44.07	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0001400 PE=4 SV=1	[more]
A0A7J0GPN0	2.0e-27	43.50	UBX domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_23g0011260 PE=4...	[more]
A0A2P5BGF8	2.0e-27	44.38	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_321990 PE=4 SV...	[more]

BLAST of Lag0039754 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G34070.1	2.8e-05	24.11	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 201..261 e-value: 5.1E-8 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..72
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 138..267
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 138..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039754.1	Lag0039754.1	mRNA