Lag0039733 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039733
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	O-fucosyltransferase family protein
Location	chr2: 49065355 .. 49065843 (-)
RNA-Seq Expression	Lag0039733
Synteny	Lag0039733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGGCTTCAGCCGCCTGAACAGTTCGCATTCCACTGCCTCCCTGTCGCCGCCGGCATCGCCTCGGCACCGGCAACTAAGCAGTCGTACTGGCAGTGCTAGTGGTAGCGGTAGCAGCGGTTTTAGTGTTCGCGACTCGAAGCAGAGCAGCATTATGGAGAAAGTGGTTTTTCTGATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTACATTTCGATGATGTTGTTGTATATGGGCTCCTTGAATTTCGACGTTTCCATTTCCAATCTGAAAACCAGGGTTGTTTCAGTTAACAAACGCGCTCCGCCGGGGTCTGTGTATAGGAGTCCTCAGGTTTTTGAGAAGCTCTGGCCTTTCATGGAAGCTGAGAGCCGAAACAGTACCACACATGCGGTATTTTTGCTTCTCTTTCTACTCCTTGTTACGTGCTTTTGTTGTGGGAATGGCAGTTTGAAAATTGACTGA

mRNA sequence

ATGCATGGCTTCAGCCGCCTGAACAGTTCGCATTCCACTGCCTCCCTGTCGCCGCCGGCATCGCCTCGGCACCGGCAACTAAGCAGTCGTACTGGCAGTGCTAGTGGTAGCGGTAGCAGCGGTTTTAGTGTTCGCGACTCGAAGCAGAGCAGCATTATGGAGAAAGTGGTTTTTCTGATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTACATTTCGATGATGTTGTTGTATATGGGCTCCTTGAATTTCGACGTTTCCATTTCCAATCTGAAAACCAGGGTTGTTTCAGTTAACAAACGCGCTCCGCCGGGGTCTGTGTATAGGAGTCCTCAGGTTTTTGAGAAGCTCTGGCCTTTCATGGAAGCTGAGAGCCGAAACAGTACCACACATGCGGTATTTTTGCTTCTCTTTCTACTCCTTGTTACGTGCTTTTGTTGTGGGAATGGCAGTTTGAAAATTGACTGA

Coding sequence (CDS)

ATGCATGGCTTCAGCCGCCTGAACAGTTCGCATTCCACTGCCTCCCTGTCGCCGCCGGCATCGCCTCGGCACCGGCAACTAAGCAGTCGTACTGGCAGTGCTAGTGGTAGCGGTAGCAGCGGTTTTAGTGTTCGCGACTCGAAGCAGAGCAGCATTATGGAGAAAGTGGTTTTTCTGATTTTGTCGGCGGTGTTCAGAAGGAAAGGGCTACTTCTGTTTGCTCCCTTGTTGTACATTTCGATGATGTTGTTGTATATGGGCTCCTTGAATTTCGACGTTTCCATTTCCAATCTGAAAACCAGGGTTGTTTCAGTTAACAAACGCGCTCCGCCGGGGTCTGTGTATAGGAGTCCTCAGGTTTTTGAGAAGCTCTGGCCTTTCATGGAAGCTGAGAGCCGAAACAGTACCACACATGCGGTATTTTTGCTTCTCTTTCTACTCCTTGTTACGTGCTTTTGTTGTGGGAATGGCAGTTTGAAAATTGACTGA

Protein sequence

MHGFSRLNSSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQSSIMEKVVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFMEAESRNSTTHAVFLLLFLLLVTCFCCGNGSLKID

Homology

[Close]

BLAST of Lag0039733 vs. NCBI nr
Match: XP_038890311.1 (O-fucosyltransferase 9 [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 4.2e-59
Identity = 126/140 (90.00%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MHGFSRLNSSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQSSIMEKVVFLI 60
           MHG+SRLN+S S+ SLSPPASPRHRQL SR+GS SGSG+ GFSVRD KQSSIMEK+VFLI
Sbjct: 1   MHGYSRLNTSRSSVSLSPPASPRHRQLRSRSGSDSGSGTGGFSVRDQKQSSIMEKLVFLI 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKR PPGSVYRSPQV
Sbjct: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRPPPGSVYRSPQV 120

Query: 121 FEKLWPFMEAESRNSTTHAV 141
           FEKLWPFMEAESRNSTTHA+
Sbjct: 121 FEKLWPFMEAESRNSTTHAL 140

[Close]

BLAST of Lag0039733 vs. NCBI nr
Match: XP_004141562.1 (O-fucosyltransferase 9 [Cucumis sativus] >XP_011656115.1 O-fucosyltransferase 9 [Cucumis sativus] >XP_031741889.1 O-fucosyltransferase 9 [Cucumis sativus] >KGN52707.1 hypothetical protein Csa_009303 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 5.5e-59
Identity = 126/140 (90.00%), Postives = 134/140 (95.71%), Query Frame = 0


Query: 1   MHGFSRLNSSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQSSIMEKVVFLI 60
           MHG+SRLN+S S+ SLSPPASPRHRQL SRTGS SG+ S GFSVRDSKQSSIMEK+VFLI
Sbjct: 1   MHGYSRLNTSRSSVSLSPPASPRHRQLRSRTGSDSGNSSGGFSVRDSKQSSIMEKLVFLI 60

Query: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQV 120
           LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSV+KRAPPG+VYRSPQV
Sbjct: 61  LSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVSKRAPPGTVYRSPQV 120

Query: 121 FEKLWPFMEAESRNSTTHAV 141
           FEKLWPFMEAESRNSTTHA+
Sbjct: 121 FEKLWPFMEAESRNSTTHAL 140

[Close]

BLAST of Lag0039733 vs. NCBI nr
Match: XP_022925409.1 (O-fucosyltransferase 9 [Cucurbita moschata] >KAG6592389.1 O-fucosyltransferase 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-51
Identity = 117/144 (81.25%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MHGFSRLNSSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQ----SSIMEKV 60
           MHG+SRL++S S+ S SPP+SPR+RQL S +GS SG GS GFSVRD KQ    SSIMEK+
Sbjct: 1   MHGYSRLSTSRSSLSPSPPSSPRYRQLRSLSGSDSGRGSVGFSVRDPKQSSSSSSIMEKL 60

Query: 61  VFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYR 120
           VFLILSAVFRRKGLLLFAPLLYISMMLLYMGS+NFDVSISNLKTRVVSVNKR P GSVYR
Sbjct: 61  VFLILSAVFRRKGLLLFAPLLYISMMLLYMGSVNFDVSISNLKTRVVSVNKRPPSGSVYR 120

Query: 121 SPQVFEKLWPFMEAESRNSTTHAV 141
           SPQVFEKLWPFMEAE+RNS+THA+
Sbjct: 121 SPQVFEKLWPFMEAETRNSSTHAL 144

[Close]

BLAST of Lag0039733 vs. NCBI nr
Match: XP_023535356.1 (O-fucosyltransferase 9 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.6 bits (540), Expect = 2.5e-51
Identity = 117/144 (81.25%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MHGFSRLNSSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQ----SSIMEKV 60
           MHG+SRL++S S+ S SPP+SPR+RQL S +GS SG GS GFSVRD KQ    SSIMEK+
Sbjct: 1   MHGYSRLSTSRSSLSPSPPSSPRYRQLRSLSGSDSGRGSVGFSVRDPKQSSSSSSIMEKL 60

Query: 61  VFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYR 120
           VFLILSAVFRRKGLLLFAPLLYISMMLLYMGS+NFDVSISNLKTRVVSVNKR P GSVYR
Sbjct: 61  VFLILSAVFRRKGLLLFAPLLYISMMLLYMGSVNFDVSISNLKTRVVSVNKRPPSGSVYR 120

Query: 121 SPQVFEKLWPFMEAESRNSTTHAV 141
           SPQVFEKLWPFMEAE+RNS+THA+
Sbjct: 121 SPQVFEKLWPFMEAETRNSSTHAL 144

[Close]

BLAST of Lag0039733 vs. NCBI nr
Match: KAG7025204.1 (hypothetical protein SDJN02_14027 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 212.2 bits (539), Expect = 3.3e-51
Identity = 117/145 (80.69%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MHGFSRLNSSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQ-----SSIMEK 60
           MHG+SRL++S S+ S SPP+SPR+RQL S +GS SG GS GFSVRD KQ     SSIMEK
Sbjct: 1   MHGYSRLSTSRSSLSPSPPSSPRYRQLRSLSGSDSGRGSVGFSVRDPKQSSSSSSSIMEK 60

Query: 61  VVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVY 120
           +VFLILSAVFRRKGLLLFAPLLYISMMLLYMGS+NFDVSISNLKTRVVSVNKR P GSVY
Sbjct: 61  LVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSVNFDVSISNLKTRVVSVNKRPPSGSVY 120

Query: 121 RSPQVFEKLWPFMEAESRNSTTHAV 141
           RSPQVFEKLWPFMEAE+RNS+THA+
Sbjct: 121 RSPQVFEKLWPFMEAETRNSSTHAL 145

[Close]

BLAST of Lag0039733 vs. ExPASy Swiss-Prot
Match: Q8H1E6 (O-fucosyltransferase 9 OS=Arabidopsis thaliana OX=3702 GN=OFUT9 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 67/147 (45.58%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 1   MHGFSRLNSSHSTA-----SLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQSSIMEK 60
           MHG SRL +  S       S SPP+SPR R    ++  A G    G            E+
Sbjct: 1   MHGLSRLGNGSSNGRINIPSPSPPSSPRIRHTRGKS-LAGGVYKQGLG----------ER 60

Query: 61  VVFLILSAVFRRKGLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVY 120
           +VFL+ S VFRRKG+LL APLLYI+ MLL+MGS  F  ++ +L   V  V +R  PGSVY
Sbjct: 61  LVFLLFSIVFRRKGVLLLAPLLYIAGMLLFMGSFGF--TVLDLGHGVEIVYRRGSPGSVY 120

Query: 121 RSPQVFEKLWPFMEAESRNSTTHAVFL 143
           RSP+VF++LWP MEA+  N ++H V +
Sbjct: 121 RSPKVFKRLWPVMEADV-NGSSHNVLM 133

[Close]

BLAST of Lag0039733 vs. ExPASy Swiss-Prot
Match: Q9ZVF7 (Protein ESMERALDA 1 OS=Arabidopsis thaliana OX=3702 GN=ESMD1 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 0


Query: 9   SSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQSSIMEKVVFLILSAVFRRK 68
           S H+T   SPPASPR         S + +GS   +V+ S+  ++  ++ +++LS + RR+
Sbjct: 10  SGHTTP--SPPASPRRSPRYRHGRSKAAAGSRFPTVQPSR--TLAHRLSWILLSVLLRRQ 69

Query: 69  GLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFM 128
           G+ LFAPL+YIS MLLYMG+++FDV        V  + +R PPGSVY+SPQV+ KL P M
Sbjct: 70  GIFLFAPLIYISCMLLYMGTVSFDV--------VPIIQRRPPPGSVYKSPQVYAKLRPEM 127

Query: 129 EAESRNSTTHAV 141
           +A+  NST  A+
Sbjct: 130 DAD--NSTADAI 127

[Close]

BLAST of Lag0039733 vs. ExPASy Swiss-Prot
Match: F4HXW9 (O-fucosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=OFUT4 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 9   SSHSTASLSPPASPRHRQLSSRTGSASGSGSSGFSVRDSKQSSIMEKVVFLILSAVFRRK 68
           S H+T   SPP SP   +  S++ S SG   S          ++  ++ ++ILS + RR+
Sbjct: 18  SDHTTP--SPPTSPHLCRSRSKSSSVSGQQQS---------RNVAHRLSWIILSVLLRRQ 77

Query: 69  GLLLFAPLLYISMMLLYMGSLNFDVSISNLKTRVVSVNKRAPPGSVYRSPQVFEKLWPFM 128
           G+LLFAP++YIS ML ++ + +FD S          +++R  PGSVYRSPQV+ +L   +
Sbjct: 78  GILLFAPIIYISCMLFHLHAASFDAS--------PIIHRRPAPGSVYRSPQVYARLRGEI 128

Query: 129 EAESRNSTTHAV 141
           EA+  N+T  A+
Sbjct: 138 EAD--NTTADAI 128

The following BLAST results are available for this feature:

BLAST of Lag0039733 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890311.1	4.2e-59	90.00	O-fucosyltransferase 9 [Benincasa hispida]	[more]
XP_004141562.1	5.5e-59	90.00	O-fucosyltransferase 9 [Cucumis sativus] >XP_011656115.1 O-fucosyltransferase 9 ...	[more]
XP_022925409.1	2.5e-51	81.25	O-fucosyltransferase 9 [Cucurbita moschata] >KAG6592389.1 O-fucosyltransferase 9...	[more]
XP_023535356.1	2.5e-51	81.25	O-fucosyltransferase 9 [Cucurbita pepo subsp. pepo]	[more]
KAG7025204.1	3.3e-51	80.69	hypothetical protein SDJN02_14027 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0039733 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H1E6	1.3e-18	45.58	O-fucosyltransferase 9 OS=Arabidopsis thaliana OX=3702 GN=OFUT9 PE=2 SV=1	[more]
Q9ZVF7	2.7e-16	43.94	Protein ESMERALDA 1 OS=Arabidopsis thaliana OX=3702 GN=ESMD1 PE=2 SV=1	[more]
F4HXW9	1.3e-10	37.12	O-fucosyltransferase 4 OS=Arabidopsis thaliana OX=3702 GN=OFUT4 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR31288:SF22	O-FUCOSYLTRANSFERASE 9	coord: 16..140
IPR024709	Putative O-fucosyltransferase, plant	PANTHER	PTHR31288	FAMILY NOT NAMED	coord: 16..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039733.1	Lag0039733.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006004	fucose metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity