Lag0039710 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039710
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr2: 48717470 .. 48718301 (+)
RNA-Seq ExpressionLag0039710
SyntenyLag0039710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACACCGCGTGGCTTGCCTGCTTGTCTTCTTGTTGAGCATTTTTACAATGGATTGAATCAAACTTCCAAAGCAATAGTCAATGCATCAGCTAATGCTTTGTTGCTTAAAAATACTTTCAATGAGGCAAATGAGATTTTAGACGCAATTGTTGCAAATAACAGTCAATGTGGAGAAGAAGAAACACCATCTAGAAGCAGTGTCAAGATCCAAGAAGTCAATCATCTCGAGACACTATCGGAGCGGATGCTAACTATGAATGGTATGCTTATGAATCTTACTTTAGGGAATCAAGTTCAAGTTCCAGTCGTGAGTCAAGTTTTAACCCCCATGTGCACTACTTGTATGAAGAGCACTCATTTGAAGATTGTCCTCAAAATCCAACTTTAGTATATTTTGTAGGTGCACAGAACCAAATAAATCCTTATTCCAACGCATATAATCCATGATGGAGACAACACCCTAACTTATCATGGGGAGGAAAAAATGCAAGTGCATCCAATGTAAAACCTTTCGTTAAATAGGGAGAAACACCAAAATTAAAAGGTCAAGCTCAACTAAAGATTTCACAGCCTTTGCAGCCGCAAATGCAGCAATAGCCAATGCAAGTGCAACCCCTATCAACAACAAACTGGAGAATCTTATGAGGGAACTAATGACCAAGAATGACGTAGTAATTCAAAGTCAAATAGCTTCCTTGAGGAGTTTAGAATCTCAAATTGGGCAGTTAGCCAAGGAAATGAGGAACAGACCAATAGGGACCCTACCAAGCAATACAAAGAACTCGAAAAAAGAAGGCCTAAGCAAGGATAAGGCCTCCATTTCCTAA

mRNA sequence

ATGTCCACACCGCGTGGCTTGCCTGCTTGTCTTCTTGTTGAGCATTTTTACAATGGATTGAATCAAACTTCCAAAGCAATAGTCAATGCATCAGCTAATGCTTTGTTGCTTAAAAATACTTTCAATGAGGCAAATGAGATTTTAGACGCAATTGTTGCAAATAACAGTCAATGTGGAGAAGAAGAAACACCATCTAGAAGCAGTGTCAAGATCCAAGAAGTCAATCATCTCGAGACACTATCGGAGCGGATGCTAACTATGAATGCCGCAAATGCAGCAATAGCCAATGCAAGTGCAACCCCTATCAACAACAAACTGGAGAATCTTATGAGGGAACTAATGACCAAGAATGACGTAGTAATTCAAAGTCAAATAGCTTCCTTGAGGAGTTTAGAATCTCAAATTGGGCAGTTAGCCAAGGAAATGAGGAACAGACCAATAGGGACCCTACCAAGCAATACAAAGAACTCGAAAAAAGAAGGCCTAAGCAAGGATAAGGCCTCCATTTCCTAA

Coding sequence (CDS)

ATGTCCACACCGCGTGGCTTGCCTGCTTGTCTTCTTGTTGAGCATTTTTACAATGGATTGAATCAAACTTCCAAAGCAATAGTCAATGCATCAGCTAATGCTTTGTTGCTTAAAAATACTTTCAATGAGGCAAATGAGATTTTAGACGCAATTGTTGCAAATAACAGTCAATGTGGAGAAGAAGAAACACCATCTAGAAGCAGTGTCAAGATCCAAGAAGTCAATCATCTCGAGACACTATCGGAGCGGATGCTAACTATGAATGCCGCAAATGCAGCAATAGCCAATGCAAGTGCAACCCCTATCAACAACAAACTGGAGAATCTTATGAGGGAACTAATGACCAAGAATGACGTAGTAATTCAAAGTCAAATAGCTTCCTTGAGGAGTTTAGAATCTCAAATTGGGCAGTTAGCCAAGGAAATGAGGAACAGACCAATAGGGACCCTACCAAGCAATACAAAGAACTCGAAAAAAGAAGGCCTAAGCAAGGATAAGGCCTCCATTTCCTAA

Protein sequence

MSTPRGLPACLLVEHFYNGLNQTSKAIVNASANALLLKNTFNEANEILDAIVANNSQCGEEETPSRSSVKIQEVNHLETLSERMLTMNAANAAIANASATPINNKLENLMRELMTKNDVVIQSQIASLRSLESQIGQLAKEMRNRPIGTLPSNTKNSKKEGLSKDKASIS
Homology
BLAST of Lag0039710 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-21
Identity = 72/193 (37.31%), Postives = 109/193 (56.48%), Query Frame = 0

Query: 6   GLPACLLVEHFYNGLNQTSKAIVNASANALLLKNTFNEANEILDAIVANNSQCGEEETP- 65
           G+P C+ +E FYNGLN  S+ +++ASAN  +L  ++NEA EIL+ I +NN Q      P 
Sbjct: 80  GIPHCIQMETFYNGLNAASRMVLDASANGAILSKSYNEAFEILETIASNNYQWSNTRAPT 139

Query: 66  SRSSVKIQEVNHLETLSERMLTMNAANAAI------ANASATPINNK------------- 125
           SR    + EV+ +  L+ +M +M   +  +      A++S  P   +             
Sbjct: 140 SRKVAGVLEVDAITALTAQMASMTNNHPNLSWGGQGASSSTAPAQGRQAYPPGFSQQPRH 199

Query: 126 -----------LENLMRELMTKNDVVIQSQIASLRSLESQIGQLAKEMRNRPIGTLPSNT 168
                      LE+LMR+ M KND VIQSQ ASLR+LE Q+G LA E++ RP G+LPS+T
Sbjct: 200 SQHAQNAQPSSLESLMRDYMAKNDAVIQSQAASLRNLELQLGHLANELKARPQGSLPSDT 259

BLAST of Lag0039710 vs. NCBI nr
Match: XP_023522102.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-19
Identity = 70/169 (41.42%), Postives = 103/169 (60.95%), Query Frame = 0

Query: 13  VEHFYNGLNQTSKAIVNASANALLLKNTFNEANEILDAIVANNSQCGE-EETPSRSSVKI 72
           +E FYNGLN  +K +V+ASAN  +L  T+NEA EIL+ I +NN Q  +    P R +  +
Sbjct: 1   METFYNGLNIATKQVVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGV 60

Query: 73  QEVNHLETLSERM--LTMNAANAAIANAS--------ATPINNKLE---NLMRELMTKND 132
            EV+ L +++ ++  +T    N A+   S        A  IN       +L++E M KND
Sbjct: 61  LEVDALSSINAQLASVTNILQNLALGQDSMIKAPVHTAAVINQTAAESCSLIKEYMAKND 120

Query: 133 VVIQSQIASLRSLESQIGQLAKEMRNRPIGTLPSNTKNSKKEGLSKDKA 168
             IQSQ ASLR+LE Q+GQLA E+RNRP+  LP++T+  K+EG+ + +A
Sbjct: 121 AAIQSQQASLRNLEVQVGQLANELRNRPLSKLPADTEMPKREGMEQCQA 169

BLAST of Lag0039710 vs. NCBI nr
Match: XP_030494802.1 (uncharacterized protein LOC115710583 [Cannabis sativa])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-18
Identity = 76/232 (32.76%), Postives = 110/232 (47.41%), Query Frame = 0

Query: 6   GLPACLLVEHFYNGLNQTSKAIVNASANALLLKNTFNEANEILDAIVANNSQCGEEETP- 65
           G+P C+ +E FYNGLN  S+ +++ASAN  +L  ++NEA EIL+ I +NN Q      P 
Sbjct: 111 GIPHCIQLETFYNGLNAASRMVLDASANGAILSKSYNEAFEILERIASNNYQWSTNRAPT 170

Query: 66  SRSSVKIQEVNHLETLSERMLTM------------------------------------- 125
           SR    + EV+ L  L+ +M +M                                     
Sbjct: 171 SRKVAGVLEVDALTALTAQMASMTNILKNMNMGGSVQPAATIQRAEISCVYCGDGHTFEN 230

Query: 126 ---NAANAAIANASATPI-----------------------------NNKLENLMRELMT 168
              N A+     AS++                                + LE+LMR+ M 
Sbjct: 231 CPSNPASVCYVGASSSGAEQAQGKQSFPPGFSQQPRPQQPHQPQGSQTSSLESLMRDYMA 290

BLAST of Lag0039710 vs. NCBI nr
Match: XP_030490806.1 (uncharacterized protein LOC115707099 [Cannabis sativa])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-18
Identity = 73/206 (35.44%), Postives = 105/206 (50.97%), Query Frame = 0

Query: 6   GLPACLLVEHFYNGLNQTSKAIVNASANALLLKNTFNEANEILDAIVANNSQCGEEETP- 65
           G+P C+ +E F NGLN  S+ +++ASAN  +L  ++NE  EIL+ I +NN Q      P 
Sbjct: 189 GIPHCIQLETFCNGLNGASRMVLDASANGAILSKSYNETFEILERIASNNYQWSTNRAPT 248

Query: 66  SRSSVKIQEVNHLETLSERMLTMNAA-----------------NAAIANASATPINNK-- 125
           SR    + EV+ L  L+ ++  +  A                     A++S      K  
Sbjct: 249 SRKVAGVLEVDALTALTAQIQLLKIALQIQLRFAMWHHPNFSWGGQRASSSGAQAQGKQS 308

Query: 126 ------------------------LENLMRELMTKNDVVIQSQIASLRSLESQIGQLAKE 168
                                   LE+LMR+ M KNDVVIQSQ ASLR+LE Q+GQLA +
Sbjct: 309 FPSGFSQQPRPQQPHQPQGSQTSSLESLMRDYMAKNDVVIQSQAASLRNLEIQLGQLAND 368

BLAST of Lag0039710 vs. NCBI nr
Match: KAG8475506.1 (hypothetical protein CXB51_032293 [Gossypium anomalum])

HSP 1 Score: 102.1 bits (253), Expect = 5.0e-18
Identity = 76/230 (33.04%), Postives = 110/230 (47.83%), Query Frame = 0

Query: 6   GLPACLLVEHFYNGLNQTSKAIVNASANALLLKNTFNEANEILDAIVANNSQCGEEETPS 65
           G+P C+ +E FYNGLN  ++ +V+A+AN ++L  ++NEA EI++ I +NN Q       S
Sbjct: 183 GIPHCIQLETFYNGLNAHTRLMVDATANGVILSKSYNEAYEIIERIASNNYQWPSNRAAS 242

Query: 66  RSSVKIQEVNHLETLSE------------RMLTMNAANAAIA------------------ 125
           R  V   EV+ ++TL+             +  T N+AN  +A                  
Sbjct: 243 RRHV--AEVHEVDTLTSLIAQLSSIFSMLKQFTANSANNFVAQPPSPFEVVSCVYYGKSY 302

Query: 126 ---NASATP-----------------------------------INNKLENLMRELMTKN 168
              N  + P                                    +N LENL++  M KN
Sbjct: 303 SFENCPSNPESNNQGNGPNNNLLQHRPNQSQGFTQQAPELPQVEASNSLENLLKMCMAKN 362

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_030509265.12.8e-2137.31uncharacterized protein LOC115723943 [Cannabis sativa][more]
XP_023522102.13.5e-1941.42LOW QUALITY PROTEIN: uncharacterized protein LOC111785979 [Cucurbita pepo subsp.... [more]
XP_030494802.11.7e-1832.76uncharacterized protein LOC115710583 [Cannabis sativa][more]
XP_030490806.12.9e-1835.44uncharacterized protein LOC115707099 [Cannabis sativa][more]
KAG8475506.15.0e-1833.04hypothetical protein CXB51_032293 [Gossypium anomalum][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039710.1Lag0039710.1mRNA