Lag0039699 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGTGGAAATGGTTCGAGGTATGGATACTCTATGTTAGTACACATCGTGAAGATCTCACGATGTCTTTCTGACACGTGTAATGCGATGTGGAAATAGAATTGTTTAGGTGCATTAGACGGTACGTACATAAAGGTTCATGTTAGTGCGGCTGATCGACTAAGATATAGGATGCGTAAGGGTGAGATTGCCAAATGTATTGGGCGTTGTGTTGCTGAAAGGTGAATTCATTTTCGTTATGTCGGGATGGGAAGGTTCGACTGCTGATTCTCATGTACTCAGGGATGTAATATCACGCCCCAACGGACTGATAGTGCCGAAGGGTATGAAACCCACTATCAATCTAAAATAGGAACACTTATGTCATCCTAAGGTATTAACCTTCTTTTTTGAACAGGCTACTACTATCTCTATCATGTCGGGTATCCAAACGCAGAGGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGTAATGCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGTACGTAATGTTATCGAGAGAGCATTTGGTGCGCTGAAAGGATGGTGGGCGATACTTCGAGGGAAGTCCTACTACCTTGTTCGGACCCAGTGTCGAATCATAACAGCATGCTGTTTACTCCACAACCTCATCACCCGAGAGATGGGTCTGGATGTTGGGTTGGATGAAGGTGATATTGGTATGTCTGAACCCGTATCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACTCAGAAGCGAGATGACCTAGCCAACAGGATGTTCAACGCGTGGGGGAAACATCATTGA ATGGGAGGTGGAAATGGTTCGAGGGTGAGATTGCCAAATGTATTGGGCGTTGTGTTGCTGAAAGGTGAATTCATTTTCGTTATGTCGGGATGGGAAGGTTCGACTGCTGATTCTCATGTACTCAGGGATGTAATATCACGCCCCAACGGACTGATAGTGCCGAAGGGCTACTACTATCTCTATCATGTCGGGTATCCAAACGCAGAGGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGTAATGCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGTACGTAATGTTATCGAGAGAGCATTTGGTGCGCTGAAAGGATGGTGGGCGATACTTCGAGGGAAGTCCTACTACCTTGTTCGGACCCAGTGTCGAATCATAACAGCATGCTGTTTACTCCACAACCTCATCACCCGAGAGATGGGTCTGGATGTTGGGTTGGATGAAGGTGATATTGGTATGTCTGAACCCGTATCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACTCAGAAGCGAGATGACCTAGCCAACAGGATGTTCAACGCGTGGGGGAAACATCATTGA ATGGGAGGTGGAAATGGTTCGAGGGTGAGATTGCCAAATGTATTGGGCGTTGTGTTGCTGAAAGGTGAATTCATTTTCGTTATGTCGGGATGGGAAGGTTCGACTGCTGATTCTCATGTACTCAGGGATGTAATATCACGCCCCAACGGACTGATAGTGCCGAAGGGCTACTACTATCTCTATCATGTCGGGTATCCAAACGCAGAGGGTTTCTTGGCACCTTACAAAGGAGAGCGGTACCACTTAACCGAGTGGCGTGGGGGAGGTAATGCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGTACGTAATGTTATCGAGAGAGCATTTGGTGCGCTGAAAGGATGGTGGGCGATACTTCGAGGGAAGTCCTACTACCTTGTTCGGACCCAGTGTCGAATCATAACAGCATGCTGTTTACTCCACAACCTCATCACCCGAGAGATGGGTCTGGATGTTGGGTTGGATGAAGGTGATATTGGTATGTCTGAACCCGTATCTCTCGATGGCGAGAACATTACCTTCATTCAAAGCTCCACTGAATGGACTCAGAAGCGAGATGACCTAGCCAACAGGATGTTCAACGCGTGGGGGAAACATCATTGA MGGGNGSRVRLPNVLGVVLLKGEFIFVMSGWEGSTADSHVLRDVISRPNGLIVPKGYYYLYHVGYPNAEGFLAPYKGERYHLTEWRGGGNAPTTPREFFNMKHSSVRNVIERAFGALKGWWAILRGKSYYLVRTQCRIITACCLLHNLITREMGLDVGLDEGDIGMSEPVSLDGENITFIQSSTEWTQKRDDLANRMFNAWGKHH Homology
BLAST of Lag0039699 vs. NCBI nr
Match: KAA0062747.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22546.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 265.8 bits (678), Expect = 3.1e-67 Identity = 127/189 (67.20%), Postives = 144/189 (76.19%), Query Frame = 0
BLAST of Lag0039699 vs. NCBI nr
Match: KAA0048149.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK08105.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 264.6 bits (675), Expect = 7.0e-67 Identity = 124/189 (65.61%), Postives = 142/189 (75.13%), Query Frame = 0
BLAST of Lag0039699 vs. NCBI nr
Match: XP_031740445.1 (uncharacterized protein LOC116403439 [Cucumis sativus]) HSP 1 Score: 262.7 bits (670), Expect = 2.7e-66 Identity = 122/189 (64.55%), Postives = 147/189 (77.78%), Query Frame = 0
BLAST of Lag0039699 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 259.2 bits (661), Expect = 2.9e-65 Identity = 124/192 (64.58%), Postives = 145/192 (75.52%), Query Frame = 0
BLAST of Lag0039699 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 258.1 bits (658), Expect = 6.6e-65 Identity = 121/189 (64.02%), Postives = 143/189 (75.66%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy Swiss-Prot
Match: Q9M2U3 (Protein ALP1-like OS=Arabidopsis thaliana OX=3702 GN=At3g55350 PE=2 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.7e-07 Identity = 44/142 (30.99%), Postives = 62/142 (43.66%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy Swiss-Prot
Match: Q96MB7 (Putative nuclease HARBI1 OS=Homo sapiens OX=9606 GN=HARBI1 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 5.5e-06 Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy Swiss-Prot
Match: Q17QR8 (Putative nuclease HARBI1 OS=Bos taurus OX=9913 GN=HARBI1 PE=2 SV=1) HSP 1 Score: 52.0 bits (123), Expect = 9.4e-06 Identity = 46/150 (30.67%), Postives = 68/150 (45.33%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy Swiss-Prot
Match: B0BN95 (Putative nuclease HARBI1 OS=Rattus norvegicus OX=10116 GN=Harbi1 PE=2 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 7.9e-05 Identity = 44/150 (29.33%), Postives = 64/150 (42.67%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy TrEMBL
Match: A0A5D3DG22 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00290 PE=3 SV=1) HSP 1 Score: 265.8 bits (678), Expect = 1.5e-67 Identity = 127/189 (67.20%), Postives = 144/189 (76.19%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy TrEMBL
Match: A0A5A7U3X6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002670 PE=3 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 3.4e-67 Identity = 124/189 (65.61%), Postives = 142/189 (75.13%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy TrEMBL
Match: A0A5A7VL29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00850 PE=3 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 1.4e-65 Identity = 124/192 (64.58%), Postives = 145/192 (75.52%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 3.2e-65 Identity = 121/189 (64.02%), Postives = 143/189 (75.66%), Query Frame = 0
BLAST of Lag0039699 vs. ExPASy TrEMBL
Match: A0A1S3C570 (putative nuclease HARBI1 OS=Cucumis melo OX=3656 GN=LOC103496992 PE=3 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 4.1e-65 Identity = 124/192 (64.58%), Postives = 145/192 (75.52%), Query Frame = 0
BLAST of Lag0039699 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 115.5 bits (288), Expect = 4.9e-26 Identity = 68/187 (36.36%), Postives = 96/187 (51.34%), Query Frame = 0
BLAST of Lag0039699 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23 Identity = 64/209 (30.62%), Postives = 100/209 (47.85%), Query Frame = 0
BLAST of Lag0039699 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 1.2e-11 Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 0
BLAST of Lag0039699 vs. TAIR 10
Match: AT5G12010.1 (unknown protein; INVOLVED IN: response to salt stress; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 7.6e-11 Identity = 43/137 (31.39%), Postives = 63/137 (45.99%), Query Frame = 0
BLAST of Lag0039699 vs. TAIR 10
Match: AT4G10890.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 62.4 bits (150), Expect = 4.9e-10 Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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