Lag0039693 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039693
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionPlant protein of unknown function (DUF247)
Locationchr2: 48481392 .. 48481874 (-)
RNA-Seq ExpressionLag0039693
SyntenyLag0039693
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATCAACACCACCTTCGCCGAAGTAGTTTTCAGAAATTTGGTGGCGTTTGAAGCAGCAACAAAACTAAACCCACCACACTTGAGCTATTACGTAGCATTGATGAGTGGGTTAATAACCACAGCCAAGGATGTCAAGATATTGAAGCAACAATACATCATTGACCACGAATCAGGAAGTGACGAAGAGGTGGTGAAAGTGTTTGGTGGGCTAAGAAATGTCTTGGAGCTTCACCAGCAGAGTTGTAACTCTAGTACGATCATGAAGATGGCCGAAATTCAAATCGTTAAAGACATCAATGGCTATTACGAAAGCTGCTGGACGGTGAAACTCAAAAGATTCATTAAGAGATATATTTATCCAGTAATGAAGATGGTATTTCTTATTCTTGTGATTTTGCTTATTGTTGTCGTTGTTGTACGCACGTTTTGTGGTTGGTTTGGTTGCTCTGGAATTTTGTATGTGGTTTCTGGTGTGTGA

mRNA sequence

ATGATCATCAACACCACCTTCGCCGAAGTAGTTTTCAGAAATTTGGTGGCGTTTGAAGCAGCAACAAAACTAAACCCACCACACTTGAGCTATTACGTAGCATTGATGAGTGGGTTAATAACCACAGCCAAGGATGTCAAGATATTGAAGCAACAATACATCATTGACCACGAATCAGGAAGTGACGAAGAGGTGGTGAAAGTGTTTGGTGGGCTAAGAAATGTCTTGGAGCTTCACCAGCAGAGTTGTAACTCTAGTACGATCATGAAGATGGCCGAAATTCAAATCGTTAAAGACATCAATGGCTATTACGAAAGCTGCTGGACGGTGAAACTCAAAAGATTCATTAAGAGATATATTTATCCAGTAATGAAGATGGTATTTCTTATTCTTGTGATTTTGCTTATTGTTGTCGTTGTTGTACGCACGTTTTGTGGTTGGTTTGGTTGCTCTGGAATTTTGTATGTGGTTTCTGGTGTGTGA

Coding sequence (CDS)

ATGATCATCAACACCACCTTCGCCGAAGTAGTTTTCAGAAATTTGGTGGCGTTTGAAGCAGCAACAAAACTAAACCCACCACACTTGAGCTATTACGTAGCATTGATGAGTGGGTTAATAACCACAGCCAAGGATGTCAAGATATTGAAGCAACAATACATCATTGACCACGAATCAGGAAGTGACGAAGAGGTGGTGAAAGTGTTTGGTGGGCTAAGAAATGTCTTGGAGCTTCACCAGCAGAGTTGTAACTCTAGTACGATCATGAAGATGGCCGAAATTCAAATCGTTAAAGACATCAATGGCTATTACGAAAGCTGCTGGACGGTGAAACTCAAAAGATTCATTAAGAGATATATTTATCCAGTAATGAAGATGGTATTTCTTATTCTTGTGATTTTGCTTATTGTTGTCGTTGTTGTACGCACGTTTTGTGGTTGGTTTGGTTGCTCTGGAATTTTGTATGTGGTTTCTGGTGTGTGA

Protein sequence

MIINTTFAEVVFRNLVAFEAATKLNPPHLSYYVALMSGLITTAKDVKILKQQYIIDHESGSDEEVVKVFGGLRNVLELHQQSCNSSTIMKMAEIQIVKDINGYYESCWTVKLKRFIKRYIYPVMKMVFLILVILLIVVVVVRTFCGWFGCSGILYVVSGV
Homology
BLAST of Lag0039693 vs. NCBI nr
Match: XP_038889519.1 (putative UPF0481 protein At3g02645 [Benincasa hispida])

HSP 1 Score: 224.9 bits (572), Expect = 4.8e-55
Identity = 118/154 (76.62%), Postives = 132/154 (85.71%), Query Frame = 0

Query: 7   FAEVVFRNLVAFEAATKLNPPHLSYYVALMSGLITTAKDVKILKQQYIIDHESGSDEEVV 66
           FAEVVFRNLVAFEAAT LNPP   YYVALMSGLITTA DVKILKQ+ II+  SGS+EEVV
Sbjct: 383 FAEVVFRNLVAFEAATNLNPPWFGYYVALMSGLITTANDVKILKQERIIESHSGSEEEVV 442

Query: 67  KVFGGLRNVLELHQQSCNSSTIMKMAEIQIVKDINGYYESCWTVKLKRFIKRYIYPVMKM 126
           K+F GLRNVLELHQQ   S  IM MAE+QIVKDIN YYESCW VK KR +KRY+ PV+K+
Sbjct: 443 KLFSGLRNVLELHQQRYKSCRIMNMAELQIVKDINYYYESCWKVKAKRLVKRYVNPVVKI 502

Query: 127 VFLILVILLIVVVVVRTFCGWFGCSGILYVVSGV 161
           +F+I+VILLIVVVVV TFCGWFGCS IL+VVSG+
Sbjct: 503 LFVIVVILLIVVVVVGTFCGWFGCSRILHVVSGL 536

BLAST of Lag0039693 vs. NCBI nr
Match: XP_008459652.1 (PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 2.4e-54
Identity = 118/155 (76.13%), Postives = 135/155 (87.10%), Query Frame = 0

Query: 7   FAEVVFRNLVAFEAATKLNPPHLSYYVALMSGLITTAKDVKILKQQYIIDHESGSDEEVV 66
           F+EVVFRNL+AFEAATKLNPP  SYYVALMS LITTA DVKILKQ+ II+ +S S+EE+V
Sbjct: 385 FSEVVFRNLMAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESQSCSEEEIV 444

Query: 67  KVFGGLRNVLELHQQS-CNSSTIMKMAEIQIVKDINGYYESCWTVKLKRFIKRYIYPVMK 126
           KVF GLRNVLELHQQS   S TIM MAEIQI KDIN YYESCW VK +R +KRY+ PV+K
Sbjct: 445 KVFSGLRNVLELHQQSNYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLK 504

Query: 127 MVFLILVILLIVVVVVRTFCGWFGCSGILYVVSGV 161
           ++F+++VILLIVVVVVRTFCGWFGCS IL+VVSGV
Sbjct: 505 LIFVMVVILLIVVVVVRTFCGWFGCSRILHVVSGV 539

BLAST of Lag0039693 vs. NCBI nr
Match: KAE8649012.1 (hypothetical protein Csa_008980 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 9.1e-54
Identity = 116/154 (75.32%), Postives = 134/154 (87.01%), Query Frame = 0

Query: 7   FAEVVFRNLVAFEAATKLNPPHLSYYVALMSGLITTAKDVKILKQQYIIDHESGSDEEVV 66
           F+EV+FRNL+AFEAATKLNPP  SYYVALMS LITTA DVKILKQ+ II+  S S+EEVV
Sbjct: 385 FSEVLFRNLMAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESHSCSEEEVV 444

Query: 67  KVFGGLRNVLELHQQS-CNSSTIMKMAEIQIVKDINGYYESCWTVKLKRFIKRYIYPVMK 126
           KVFGGLRNVLELHQ+S   S TIM MAEIQI KDIN YYESCW VK +R +KRY+ PV+K
Sbjct: 445 KVFGGLRNVLELHQKSYYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLK 504

Query: 127 MVFLILVILLIVVVVVRTFCGWFGCSGILYVVSG 160
           ++F+++VILL+VVVVVRTFCGWFGCS IL+VVSG
Sbjct: 505 LIFILVVILLVVVVVVRTFCGWFGCSRILHVVSG 538

BLAST of Lag0039693 vs. NCBI nr
Match: XP_011656112.2 (putative UPF0481 protein At3g02645 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 9.1e-54
Identity = 116/154 (75.32%), Postives = 134/154 (87.01%), Query Frame = 0

Query: 7   FAEVVFRNLVAFEAATKLNPPHLSYYVALMSGLITTAKDVKILKQQYIIDHESGSDEEVV 66
           F+EV+FRNL+AFEAATKLNPP  SYYVALMS LITTA DVKILKQ+ II+  S S+EEVV
Sbjct: 394 FSEVLFRNLMAFEAATKLNPPCFSYYVALMSWLITTANDVKILKQERIIESHSCSEEEVV 453

Query: 67  KVFGGLRNVLELHQQS-CNSSTIMKMAEIQIVKDINGYYESCWTVKLKRFIKRYIYPVMK 126
           KVFGGLRNVLELHQ+S   S TIM MAEIQI KDIN YYESCW VK +R +KRY+ PV+K
Sbjct: 454 KVFGGLRNVLELHQKSYYKSCTIMNMAEIQIAKDINCYYESCWKVKARRLVKRYVNPVLK 513

Query: 127 MVFLILVILLIVVVVVRTFCGWFGCSGILYVVSG 160
           ++F+++VILL+VVVVVRTFCGWFGCS IL+VVSG
Sbjct: 514 LIFILVVILLVVVVVVRTFCGWFGCSRILHVVSG 547

BLAST of Lag0039693 vs. NCBI nr
Match: KAG6592378.1 (putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211.5 bits (537), Expect = 5.5e-51
Identity = 113/154 (73.38%), Postives = 128/154 (83.12%), Query Frame = 0

Query: 7   FAEVVFRNLVAFEAATKLNPPHLSYYVALMSGLITTAKDVKILKQQYIIDHESGSDEEVV 66
           F+EVVFRNLVAFE ATKLNPP  S YVALMSGLITT KDVKILK+  II   SGS+E+VV
Sbjct: 119 FSEVVFRNLVAFEVATKLNPPCFSNYVALMSGLITTTKDVKILKEASIIKRHSGSEEKVV 178

Query: 67  KVFGGLRNVLELHQQSCNSSTIMKMAEIQIVKDINGYYESCWTVKLKRFIKRYIYPVMKM 126
           K+F GL+NVLELHQ S N   I  MA+IQIVKDIN YYESCWTVK KRFI++YI PVMK+
Sbjct: 179 KLFDGLKNVLELHQHSDNLCRINNMAKIQIVKDINSYYESCWTVKAKRFIQKYINPVMKV 238

Query: 127 VFLILVILLIVVVVVRTFCGWFGCSGILYVVSGV 161
           + L++VILLI VVV+RTFCGWFGCS IL VVS +
Sbjct: 239 IVLVVVILLIGVVVLRTFCGWFGCSRILNVVSPI 272

BLAST of Lag0039693 vs. ExPASy Swiss-Prot
Match: P0C897 (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-10
Identity = 42/142 (29.58%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 3   INTTFAEVVFRNLVAFEAATKLNPPHLSYYVALMSGLITTAKDVKILKQQYIIDHESGSD 62
           INT   E V RNLVA+EA     P   + Y  L++G+I + +DV++L++Q ++     SD
Sbjct: 387 INT---ETVLRNLVAYEATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSD 446

Query: 63  EEVVKVFGGLRNVLELHQQSCNSSTIMKMAEIQIVKDINGYYESCWTVKLKRFIKRYIYP 122
           +E  +++ G+   + L +      TI         +D+N YY   W VK+ R ++ Y+Y 
Sbjct: 447 QEAAEMWNGMSKSVRLTKVGFLDKTI---------EDVNRYYTGRWKVKIGRLVEVYVYG 506

Query: 123 VMKMVFLILVILLIVVVVVRTF 145
             +++  +  +LL+++V ++ F
Sbjct: 507 SWQILAFLAAVLLLMLVSLQLF 516

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889519.14.8e-5576.62putative UPF0481 protein At3g02645 [Benincasa hispida][more]
XP_008459652.12.4e-5476.13PREDICTED: putative UPF0481 protein At3g02645 [Cucumis melo][more]
KAE8649012.19.1e-5475.32hypothetical protein Csa_008980 [Cucumis sativus][more]
XP_011656112.29.1e-5475.32putative UPF0481 protein At3g02645 [Cucumis sativus][more]
KAG6592378.15.5e-5173.38putative UPF0481 protein, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
P0C8972.2e-1029.58Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana OX=3702 GN=At3g02645 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 8..137
e-value: 1.3E-24
score: 87.3
IPR004158Protein of unknown function DUF247, plantPANTHERPTHR31549PROTEIN, PUTATIVE (DUF247)-RELATED-RELATEDcoord: 8..149
NoneNo IPR availablePANTHERPTHR31549:SF207SUBFAMILY NOT NAMEDcoord: 8..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039693.1Lag0039693.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane