Lag0039681 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039681
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr2: 48316805 .. 48318548 (-)
RNA-Seq Expression	Lag0039681
Synteny	Lag0039681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATGTTCATAGGAATGTATTGTCTTTAGAGTATCGGGACGAGATTGTTAAAGTTAGTATACCTAAGGTTGTTAAGTATCCTGATACTTCTGCTTCCCTTTACCAAATTGAGGTAGTTGATTCTGTAGTGCAGGATGTTGTTGTTAATGATAAAATTAACATGGGTCTTGAACAGGATACCCAAGATGATGATATTGATAAGACAGGGGAGTTGGTTCCTGATTCTTCCCTTGATTCTATTTCTTTTGATCTTGGTATTTCTGTTACTTCTGGTGAAATGCTACCCTCTATTATGCAAACACCCAAATTGGAGTTGAAAGCATTACCTGAGCACCTCAAATACACATATCTAAGAAAAAGTAATACTTTACCTATTATTATTTCTAAAAAGTTAACTGCAGAATAGGAGGAACGACTGTTGAACGTGTTGAGGGAGCATAAGAAAGCTATTGGATGGACCTTGGTCGACATTAGTGGAATCGACCTAGCCACCTACATGCATACGATTCAGTTGGAGGAGGATGTGAAAGATTGAAATTCCTAAATTCCCAGTGGAAGCGTATAGGACCGATTCGTATTTTAATTAAGTATTCTAAAATGTCAGTACAATGGCTAATCATACAGTACAATTCTATATATAAACTAGGCTAAACATGCATTAGATCTAAATCTAATAATTGAAAGAATGAAATACTTGTTGAAGACTTTCTTCAATGAATTCCACCAAGAACAGTATGATCATAGTAGGGACACTACCACCGAGATCTTACACTGTTATATCTCTGAACTAGGAACCAGGTTGTGGGACTTGGTGTTCTTGAATTTTTGGAAAAGAATTTCACTAGAATGTTGTGAAAATTCTTGGAAGAGAAATTTTTGCTTGAGAGCAAAGTCTTCAGTTATCAATTGAGAAGACATTTTGTGTTTTATATAGAATGTCATACCCCTTTTCCTAGTCATAATAGGATAAGGATTTAATTAATTAATAATTAATTACTTTCCCAATCATAGTAGGATGAGGATTTATTTAATTAATTAATAATAATTAATTAATTAAATCAAATTTTCTAAAAAAAATTAATTAAATCAAGTTTAATTAATTTCATTTAAATAATATTTAATAAAAATATATTTTTTATTCTTTTCTTCTCTGTTCTTTTCCTTCTTTTTTTTCAAGTCTTCGTTTAAGTCGTCTTCTTCTTCAAGTCGTGCCCAGTCGCCGTCAGAGTCGTTTATTTTTTTATTTTTCATTTTTTTCTTATTTATTTCTCTCTTTCTATCTCTCTCGTATCCCCCTCTCTTCATCTTATCTCTCCTAGCGAGCACGAGCAAATCCACCAGCGAAGCAGATTTTGGTTTTAGACTAGCACGAGTAGATCGATGAGGCAGGCTTCTTCTCTACTCGATTTTTCAAGTTCTAGTGGAATCTGAATGGGTTTCGTTTCAGATCTGGGCGTTTTCAGGCGTTCTCCGGTGGCATGGGACCCACGACGTCTCTAGGCGTTCTTCGACGAGCACGGGACCCACGACGGCGACATCACAACAGCAGTTTGGAGGGGGGTTTTGCCTTGTTTCACGGTGGGTTTTCTTTCTTATTCGAGCTGCCCTCCCTCACACGATCTCTCTCCCTATCTTTCTGTTTTCCCTATCTCAATTTTGAGGGCACAACTGCACTCCCTCCCGTCGTTGGCGTTGGAAAGGAAGGAGGAGGTCTCTTCGCTCTCCCTCCTTTTAATTAA

mRNA sequence

ATGATGAATGTTCATAGGAATGTATTGTCTTTAGAGTATCGGGACGAGATTGTTAAAGTTAGTATACCTAAGGTTGTTAAGTATCCTGATACTTCTGCTTCCCTTTACCAAATTGAGGTAGTTGATTCTGTAGTGCAGGATGTTGTTGTTAATGATAAAATTAACATGGGTCTTGAACAGGATACCCAAGATGATGATATTGATAAGACAGGGGAGTTGGTTCCTGATTCTTCCCTTGATTCTATTTCTTTTGATCTTGGTATTTCTGTTACTTCTGGTGAAATGCTACCCTCTATTATGCAAACACCCAAATTGGAGTTGAAAGCATTACCTGAGCACCTCAAATACACATATCTAAGAAAAAAACAGTATGATCATAGTAGGGACACTACCACCGAGATCTTACACTGTTATATCTCTGAACTAGGAACCAGATCTGGGCGTTTTCAGGCGTTCTCCGGTGGCATGGGACCCACGACGTCTCTAGGCGTTCTTCGACGAGCACGGGACCCACGACGGCGACATCACAACAGCAGTTTGGAGGGGGGTTTTGCCTTGTTTCACGGTGGGTTTTCTTTCTTATTCGAGCTGCCCTCCCTCACACGATCTCTCTCCCTATCTTTCTGTTTTCCCTATCTCAATTTTGAGGGCACAACTGCACTCCCTCCCGTCGTTGGCGTTGGAAAGGAAGGAGGAGGTCTCTTCGCTCTCCCTCCTTTTAATTAA

Coding sequence (CDS)

ATGATGAATGTTCATAGGAATGTATTGTCTTTAGAGTATCGGGACGAGATTGTTAAAGTTAGTATACCTAAGGTTGTTAAGTATCCTGATACTTCTGCTTCCCTTTACCAAATTGAGGTAGTTGATTCTGTAGTGCAGGATGTTGTTGTTAATGATAAAATTAACATGGGTCTTGAACAGGATACCCAAGATGATGATATTGATAAGACAGGGGAGTTGGTTCCTGATTCTTCCCTTGATTCTATTTCTTTTGATCTTGGTATTTCTGTTACTTCTGGTGAAATGCTACCCTCTATTATGCAAACACCCAAATTGGAGTTGAAAGCATTACCTGAGCACCTCAAATACACATATCTAAGAAAAAAACAGTATGATCATAGTAGGGACACTACCACCGAGATCTTACACTGTTATATCTCTGAACTAGGAACCAGATCTGGGCGTTTTCAGGCGTTCTCCGGTGGCATGGGACCCACGACGTCTCTAGGCGTTCTTCGACGAGCACGGGACCCACGACGGCGACATCACAACAGCAGTTTGGAGGGGGGTTTTGCCTTGTTTCACGGTGGGTTTTCTTTCTTATTCGAGCTGCCCTCCCTCACACGATCTCTCTCCCTATCTTTCTGTTTTCCCTATCTCAATTTTGAGGGCACAACTGCACTCCCTCCCGTCGTTGGCGTTGGAAAGGAAGGAGGAGGTCTCTTCGCTCTCCCTCCTTTTAATTAA

Protein sequence

MMNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVVVNDKINMGLEQDTQDDDIDKTGELVPDSSLDSISFDLGISVTSGEMLPSIMQTPKLELKALPEHLKYTYLRKKQYDHSRDTTTEILHCYISELGTRSGRFQAFSGGMGPTTSLGVLRRARDPRRRHHNSSLEGGFALFHGGFSFLFELPSLTRSLSLSFCFPYLNFEGTTALPPVVGVGKEGGGLFALPPFN

Homology

[Close]

BLAST of Lag0039681 vs. NCBI nr
Match: XP_022159045.1 (uncharacterized protein LOC111025486 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-12
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVVVNDKINMGLEQD 61
           ++V    LS+E+  EIVK +I   +KYP+   SL QI+++DS+VQD    D  +   + D
Sbjct: 176 IDVDEGTLSVEFDKEIVKFNIFDAMKYPNDEYSLCQIDIIDSIVQDKFTKDNDDHLHKLD 235

Query: 62  TQ-----DDDIDKTGELVPDSSLDSISFDLGISVTSGEMLPSIMQTPKLELKALPEHLKY 120
            Q     +D+IDK            ++FD  IS T+ +++PSI+Q PKLELKALP+HLKY
Sbjct: 236 EQSLAEVEDEIDKE---------KMLNFDAKISTTNNKIIPSIVQAPKLELKALPDHLKY 289

[Close]

BLAST of Lag0039681 vs. NCBI nr
Match: XP_019198426.1 (PREDICTED: uncharacterized protein LOC109192308 [Ipomoea nil])

HSP 1 Score: 77.8 bits (190), Expect = 1.4e-10
Identity = 49/124 (39.52%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDV----VVNDKINMG 61
           ++V + +LS+E+  EI K +I   +KYPD   SLY ++V+DS+VQDV       +  ++ 
Sbjct: 666 VDVDKGILSVEFNGEIAKFNISDAMKYPDDYHSLYNVDVIDSIVQDVFEDSFAENLFDLE 725

Query: 62  LEQDTQDDDIDKTGELVPD--SSLDSISFDLGISVTSGEMLPSIMQTPKLELKALPEHLK 120
            E D  D+ +D + E++    S L+S + D   S+T  ++LPS+++ P LELK LP+HLK
Sbjct: 726 AEFDL-DEFVDSSCEVLSAVISGLNSANAD--FSLTHEKILPSVLRAPTLELKTLPDHLK 785

[Close]

BLAST of Lag0039681 vs. NCBI nr
Match: XP_010246599.1 (PREDICTED: uncharacterized protein LOC104589861 [Nelumbo nucifera])

HSP 1 Score: 75.9 bits (185), Expect = 5.4e-10
Identity = 46/127 (36.22%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVVVNDKINMGLEQD 61
           ++V    LS+E+  EIVK +I + +KYP+   S+  +++VDS+VQ++   + +N  L+  
Sbjct: 197 IDVDEGTLSVEFDGEIVKFNIFEAMKYPNECHSICSVDIVDSIVQEIFGEEDMNAELKLS 256

Query: 62  TQ---DDDIDKTGELVPDSSLDS--ISFDLGISVTSGEMLPSIMQTPKLELKALPEHLKY 121
            Q   ++++D + E  P+  L+    + ++  S +  ++LPSI+Q PKLELK LP+HLKY
Sbjct: 257 AQLDMEEELDTSCE-APEPILEQKVTNSNIPSSFSHKKLLPSILQAPKLELKTLPDHLKY 316

Query: 122 TYLRKKQ 124
            YL  K+
Sbjct: 317 PYLGNKE 322

[Close]

BLAST of Lag0039681 vs. NCBI nr
Match: GEZ42778.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-08
Identity = 43/134 (32.09%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 4   VHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDV--------------- 63
           VH   L++++  +++K +I   +KYP+   S++ I+V+DS+VQ V               
Sbjct: 12  VHEGTLTMKFDGQVIKFNIYDSMKYPNNEHSVFSIDVIDSLVQKVFTLNDDDSLKVALTN 71

Query: 64  VVNDKINMGLEQDTQ-DDDIDKTGELVPDSSLDSISFDLGISVTSGEMLPSIMQTPKLEL 122
            +++K+N  L+ ++   + I +   L P   ++ I   LG+ + + ++L SI+Q PKLEL
Sbjct: 72  TISEKVNQELKPNSNLQESIAELNSLTP---INKIVSYLGLPLNNDKLLSSIVQAPKLEL 131

[Close]

BLAST of Lag0039681 vs. NCBI nr
Match: XP_031402644.1 (uncharacterized protein LOC116212216 [Punica granatum])

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-08
Identity = 50/136 (36.76%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVV----VNDKINMG 61
           ++VH   LSLE+  E +  +I   +++PDT  S+  ++V+DS V+DV     V D+++  
Sbjct: 737 IDVHNGTLSLEFDKETITFNIFDAMRHPDTLESISCVDVIDSFVRDVAEQIFVQDEVDWA 796

Query: 62  LEQ----DTQ-DDDIDKTGELVPDSSLDSIS--FD---LGISVTSGEMLPSIMQTPKLEL 121
           ++Q    D Q ++D      + P  SL  +S  F+   L +  ++  +LPSI+Q PKLEL
Sbjct: 797 IQQIKDYDAQWEEDGRAQDSIQPLKSLIDVSRRFESSVLPLPTSTDRILPSIVQAPKLEL 856

Query: 122 KALPEHLKYTYLRKKQ 124
           K LPE+LKY YL +K+
Sbjct: 857 KKLPENLKYVYLGEKE 872

[Close]

BLAST of Lag0039681 vs. ExPASy TrEMBL
Match: A0A6J1DXI8 (uncharacterized protein LOC111025486 OS=Momordica charantia OX=3673 GN=LOC111025486 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.4e-13
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVVVNDKINMGLEQD 61
           ++V    LS+E+  EIVK +I   +KYP+   SL QI+++DS+VQD    D  +   + D
Sbjct: 176 IDVDEGTLSVEFDKEIVKFNIFDAMKYPNDEYSLCQIDIIDSIVQDKFTKDNDDHLHKLD 235

Query: 62  TQ-----DDDIDKTGELVPDSSLDSISFDLGISVTSGEMLPSIMQTPKLELKALPEHLKY 120
            Q     +D+IDK            ++FD  IS T+ +++PSI+Q PKLELKALP+HLKY
Sbjct: 236 EQSLAEVEDEIDKE---------KMLNFDAKISTTNNKIIPSIVQAPKLELKALPDHLKY 289

[Close]

BLAST of Lag0039681 vs. ExPASy TrEMBL
Match: A0A1U7Z3A1 (uncharacterized protein LOC104589861 OS=Nelumbo nucifera OX=4432 GN=LOC104589861 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.6e-10
Identity = 46/127 (36.22%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVVVNDKINMGLEQD 61
           ++V    LS+E+  EIVK +I + +KYP+   S+  +++VDS+VQ++   + +N  L+  
Sbjct: 197 IDVDEGTLSVEFDGEIVKFNIFEAMKYPNECHSICSVDIVDSIVQEIFGEEDMNAELKLS 256

Query: 62  TQ---DDDIDKTGELVPDSSLDS--ISFDLGISVTSGEMLPSIMQTPKLELKALPEHLKY 121
            Q   ++++D + E  P+  L+    + ++  S +  ++LPSI+Q PKLELK LP+HLKY
Sbjct: 257 AQLDMEEELDTSCE-APEPILEQKVTNSNIPSSFSHKKLLPSILQAPKLELKTLPDHLKY 316

Query: 122 TYLRKKQ 124
            YL  K+
Sbjct: 317 PYLGNKE 322

[Close]

BLAST of Lag0039681 vs. ExPASy TrEMBL
Match: A0A6P8E7Z7 (uncharacterized protein LOC116212216 OS=Punica granatum OX=22663 GN=LOC116212216 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-08
Identity = 50/136 (36.76%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVV----VNDKINMG 61
           ++VH   LSLE+  E +  +I   +++PDT  S+  ++V+DS V+DV     V D+++  
Sbjct: 737 IDVHNGTLSLEFDKETITFNIFDAMRHPDTLESISCVDVIDSFVRDVAEQIFVQDEVDWA 796

Query: 62  LEQ----DTQ-DDDIDKTGELVPDSSLDSIS--FD---LGISVTSGEMLPSIMQTPKLEL 121
           ++Q    D Q ++D      + P  SL  +S  F+   L +  ++  +LPSI+Q PKLEL
Sbjct: 797 IQQIKDYDAQWEEDGRAQDSIQPLKSLIDVSRRFESSVLPLPTSTDRILPSIVQAPKLEL 856

Query: 122 KALPEHLKYTYLRKKQ 124
           K LPE+LKY YL +K+
Sbjct: 857 KKLPENLKYVYLGEKE 872

[Close]

BLAST of Lag0039681 vs. ExPASy TrEMBL
Match: A0A6P8DJV3 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 49/136 (36.03%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVV----VNDKINMG 61
           ++VH   LSLE+  E +  +I   +++PDT  S+  ++V+DS V+DV     V ++++  
Sbjct: 698 IDVHNGTLSLEFDKETITFNIFDAMRHPDTLESISCVDVIDSFVRDVAEQIFVQEEVDWA 757

Query: 62  LEQ----DTQ-DDDIDKTGELVPDSSLDSIS--FD---LGISVTSGEMLPSIMQTPKLEL 121
           ++Q    D Q ++D      + P  SL  +S  F+   L +  ++  +LPSI+Q PKLEL
Sbjct: 758 IQQNKDYDAQWEEDGRAKDSIQPLKSLIDVSRRFESSVLPLPTSTDRLLPSIVQAPKLEL 817

Query: 122 KALPEHLKYTYLRKKQ 124
           K LPE+LKY YL +K+
Sbjct: 818 KKLPENLKYVYLGEKE 833

[Close]

BLAST of Lag0039681 vs. ExPASy TrEMBL
Match: A0A6P8D4X0 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 49/136 (36.03%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 2   MNVHRNVLSLEYRDEIVKVSIPKVVKYPDTSASLYQIEVVDSVVQDVV----VNDKINMG 61
           ++VH   LSLE+  E +  +I   +++PDT  S+  ++V+DS V+DV     V ++++  
Sbjct: 698 IDVHNGTLSLEFDKETITFNIFDAMRHPDTLESISCVDVIDSFVRDVAEQIFVQEEVDWA 757

Query: 62  LEQ----DTQ-DDDIDKTGELVPDSSLDSIS--FD---LGISVTSGEMLPSIMQTPKLEL 121
           ++Q    D Q ++D      + P  SL  +S  F+   L +  ++  +LPSI+Q PKLEL
Sbjct: 758 IQQNKDYDAQWEEDGRAKDSIQPLKSLIDVSRRFESSVLPLPTSTDRLLPSIVQAPKLEL 817

Query: 122 KALPEHLKYTYLRKKQ 124
           K LPE+LKY YL +K+
Sbjct: 818 KKLPENLKYVYLGEKE 833

The following BLAST results are available for this feature:

BLAST of Lag0039681 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159045.1	1.5e-12	42.28	uncharacterized protein LOC111025486 [Momordica charantia]	[more]
XP_019198426.1	1.4e-10	39.52	PREDICTED: uncharacterized protein LOC109192308 [Ipomoea nil]	[more]
XP_010246599.1	5.4e-10	36.22	PREDICTED: uncharacterized protein LOC104589861 [Nelumbo nucifera]	[more]
GEZ42778.1	1.3e-08	32.09	hypothetical protein [Tanacetum cinerariifolium]	[more]
XP_031402644.1	2.3e-08	36.76	uncharacterized protein LOC116212216 [Punica granatum]	[more]

BLAST of Lag0039681 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0039681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXI8	7.4e-13	42.28	uncharacterized protein LOC111025486 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A1U7Z3A1	2.6e-10	36.22	uncharacterized protein LOC104589861 OS=Nelumbo nucifera OX=4432 GN=LOC104589861...	[more]
A0A6P8E7Z7	1.1e-08	36.76	uncharacterized protein LOC116212216 OS=Punica granatum OX=22663 GN=LOC116212216...	[more]
A0A6P8DJV3	2.5e-08	36.03	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1	[more]
A0A6P8D4X0	2.5e-08	36.03	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1	[more]

BLAST of Lag0039681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039681.1	Lag0039681.1	mRNA