Lag0039675 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039675
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr2: 48162468 .. 48162809 (+)
RNA-Seq Expression	Lag0039675
Synteny	Lag0039675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAGCGTCAATTCCTCCGGTAATTCAGCCCCAGTCTCCGGCACTAATTTTAGCAGTCCACCGTTGAATCAGCTTCTCAACCAAATCACCTCTATAAAACTTGATAGAGGTAATTTTCTTCTCTGGAAAAATCTTGCGTTACCGATTCTTCGAAGTTATCGATTGGAAGGACATCTGTCTGGCTCTAAGCCATGTCCTCCAAAGTATGTCCAAGCTCCAGCTGCTGTAGCAGATCCCTCGCCATCGTCTGGTGCAGGAGGCGTGAACACAGAAGCAGTGGTTAGTCAAGCCTCTGTTTCGGCCTTAGTTGGAGAAATTAATCCAACATATGAAGCGTGA

mRNA sequence

ATGACCAGCGTCAATTCCTCCGGTAATTCAGCCCCAGTCTCCGGCACTAATTTTAGCAGTCCACCGTTGAATCAGCTTCTCAACCAAATCACCTCTATAAAACTTGATAGAGGTAATTTTCTTCTCTGGAAAAATCTTGCGTTACCGATTCTTCGAAGTTATCGATTGGAAGGACATCTGTCTGGCTCTAAGCCATGTCCTCCAAAGTATGTCCAAGCTCCAGCTGCTGTAGCAGATCCCTCGCCATCGTCTGGTGCAGGAGGCGTGAACACAGAAGCAGTGGTTAGTCAAGCCTCTGTTTCGGCCTTAGTTGGAGAAATTAATCCAACATATGAAGCGTGA

Coding sequence (CDS)

ATGACCAGCGTCAATTCCTCCGGTAATTCAGCCCCAGTCTCCGGCACTAATTTTAGCAGTCCACCGTTGAATCAGCTTCTCAACCAAATCACCTCTATAAAACTTGATAGAGGTAATTTTCTTCTCTGGAAAAATCTTGCGTTACCGATTCTTCGAAGTTATCGATTGGAAGGACATCTGTCTGGCTCTAAGCCATGTCCTCCAAAGTATGTCCAAGCTCCAGCTGCTGTAGCAGATCCCTCGCCATCGTCTGGTGCAGGAGGCGTGAACACAGAAGCAGTGGTTAGTCAAGCCTCTGTTTCGGCCTTAGTTGGAGAAATTAATCCAACATATGAAGCGTGA

Protein sequence

MTSVNSSGNSAPVSGTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYRLEGHLSGSKPCPPKYVQAPAAVADPSPSSGAGGVNTEAVVSQASVSALVGEINPTYEA

Homology

[Close]

BLAST of Lag0039675 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 1.3e-17
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 11  APVSGTNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYRLEGHLSGSKPCPPKY 70
           A VSG  F+SPPLNQLLNQITSIK+DRGNFLLW+NLALPILRSY+L  +L+G KPCPP +
Sbjct: 15  AVVSGAVFTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPPTH 74

Query: 71  VQAPAAVADPSPSSGAGGVNTEAVVSQASVSALVGEINPTYEA 114
           +     V   +P++  G  +     SQ+S +     +NPTYEA
Sbjct: 75  L-----VPTDTPTNIEGSTS-----SQSSPT-----LNPTYEA 102

[Close]

BLAST of Lag0039675 vs. NCBI nr
Match: KAA0060627.1 (Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 16  TNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYRLEGHLSGSKPCPPKYVQAPA 75
           TNFS+PPLNQLLNQ++S+KLDRGN+LLWK LALPI++SY+ EGHL+G  PCPPK++    
Sbjct: 13  TNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQI 72

Query: 76  AVADPSPSSGAGGVNTEAVVSQASVSALVGEINPTYE 113
             +       A     EA    +S S     +NP ++
Sbjct: 73  GESQSEIDGTA-----EATDGASSRSTATKTVNPKFD 104

[Close]

BLAST of Lag0039675 vs. NCBI nr
Match: TYK02246.1 (uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 16  TNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYRLEGHLSGSKPCPPKYVQAPA 75
           TNFS+PPLNQLLNQ++S+KLDRGN+LLWK LALPI++SY+ EGHL+G  PCPPK++    
Sbjct: 13  TNFSNPPLNQLLNQLSSVKLDRGNYLLWKTLALPIMKSYKFEGHLTGENPCPPKFITNQI 72

Query: 76  AVADPSPSSGAGGVNTEAVVSQASVSALVGEINPTYE 113
             +       A     EA    +S S     +NP ++
Sbjct: 73  GESQSEIDGTA-----EATDGASSRSTATKTVNPKFD 104

[Close]

BLAST of Lag0039675 vs. NCBI nr
Match: XP_038882253.1 (uncharacterized protein LOC120073479 [Benincasa hispida])

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-16
Identity = 52/96 (54.17%), Postives = 68/96 (70.83%), Query Frame = 0


Query: 18  FSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYRLEGHLSGSKPCPPKYVQAPAAV 77
           FS+PPLNQLLNQITSIKL+RG F+LWK L+LPIL+ YRLEGHLS +K CP  ++ + ++V
Sbjct: 18  FSTPPLNQLLNQITSIKLERGTFMLWKTLSLPILKGYRLEGHLSRTKVCPLMFILSTSSV 77

Query: 78  ADPSPSSGAGGVNTEAVVSQASVSALVGEINPTYEA 114
           A P      G V+++A     S S  +  +NP YEA
Sbjct: 78  AKP------GEVDSQASEGALS-STYMKSLNPQYEA 106

[Close]

BLAST of Lag0039675 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-15
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 16  TNFSSPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYRLEGHLSGSKPCPPKYVQAPA 75
           T+F++PPLNQ+LNQ+T+IKLDR N+LLWK LALPIL+ Y+LEGHL+G KPCP K+V   +
Sbjct: 17  TSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTGEKPCPEKFVTITS 76

Query: 76  AVADPSPSSGAGGVNTEAVVSQASVSALVGE--INPTYE 113
           +       +  G    +    Q + S++     INP +E
Sbjct: 77  SAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFE 115

The following BLAST results are available for this feature:

BLAST of Lag0039675 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151683.1	1.3e-17	56.31	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
KAA0060627.1	1.4e-16	49.48	Reverse transcriptase, RNA-dependent DNA polymerase [Cucumis melo var. makuwa]	[more]
TYK02246.1	1.4e-16	49.48	uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]	[more]
XP_038882253.1	3.1e-16	54.17	uncharacterized protein LOC120073479 [Benincasa hispida]	[more]
KAA0066132.1	1.2e-15	47.47	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]

BLAST of Lag0039675 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039675.1	Lag0039675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003964	RNA-directed DNA polymerase activity