Lag0039664 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039664
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Methyltransf_11 domain-containing protein
Location	chr2: 47941870 .. 47943477 (-)
RNA-Seq Expression	Lag0039664
Synteny	Lag0039664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATCAAGAAAATGGAAGAGACCTCACCGGAGGTTTCTCCAGTGAACGACTCACGTTTAAGAAGGTCGAGATGCCGATCTTTGGAGGGGATGATCCCGATTCTTGGCATTTTCGTGCTGAAAGGTATTTCCAACTTTACAAGGTTACTGATTATGAAAAATTGACTGTGGCTGTTGTTAGCTTAGAAGGGGGAAGCATTGAATTGGCATCCTGGACCGAAGGAGCGTGAACCGTTTTAGGGATGGTAAGATTTCAAAATAAGGGTATTAGAGAGATTCTGAAGTGCCCAAAAGGTAGTGTTAGGGCGATTCTTGGCCGTCAAGTAGGAGATGACGGTGGCTGCTTGCACCATTACCTCATATCTCAAATGAAGTATTGGAAAATACGTTCATAACGGACTGGACCTAGTGATTAGGTTAGAGGTTCAATGTTGGGAAGCTAGTGGGTTGCATACAATTATGAAATATGAAGAAAGCCTAACTCAGGGAGGATAAGGAGATAACCCGTTCGATGGCCAACAAGGGTGGTTATTCGAAAGCCTAAGGGGTTTAGTTCTAAACTCACTAATTCCACAAGCCCTAAAGATAATTCTAAAACCCTAAACCTTGCACTAAAACCATGTGCACAGTATTAAGAGAAATGCTCTTACTATTTCACATTAAACAGTAACATATATATTGGTATACAAAGAACTCACAAAGGAAGGTACAATTACGATTAAGAACAACTATACAAAATAACATATATCATAACATCTATTAGTCTATTCGTGATAAACATTTGTTAATCAATTAGTGTCGGGGAAGACATCTATCAGTGATCATTGAGATAGAGTAGAAAAGGAATCATGTAAAAATTTCTAAATAGACCTGCATAAAATTATTTTTAAAAAATCATATTTGCAAAATGCCAAAATCATAATCCTGCTCCTATTATTGCTAATGTGGTAATGTGAATTGTCAACTAAAATTTCCTACGTTTTACCTAGGGGTGTGAGTTACTCCTATCAAAAAGAGTTAACTGTTCGGCCTTGAGCCAAAACCACCAACTGACCAACAAGTATAATAACATCAAAAAAAAAAATTGATAAGAATTCAATCTTTCAAAGAAGGCCATACAAAAAAAGATCTAATAGGAGAGCGAAAACCTAATCCAAAAGAATAACTACCTAACTAGTAATTACAAAAAGCCTTAGAAGCCAACGTTGCTAATATTATCCCAAAATAACATCTCCAAAATTTGTTTTTATTTTATGAAACTGAATTGACCAGAAATAAGGGGGAAAGTATTACTCCATCTGATCAAATCAACGAAATTAGTTTTGTAGATTTGTCCAATTTGACCGAAACCCTTCGGCTTTACCCTCCTCTCCCTCTGCGCTCTCAGATTTAGAGTTCATTTGTAAAAAATGATGATGGCATGATTTATTCCGAAGTAAATGAGTGAATTTAGAGTTTACAAATTGTTTTGCATGTGATTGCAATTGCAGGTAATTTACATGACAGGATGGAAGGAACATCCTTCCCAACAGAAGGCCAAAAGAAGAGGATCTGCAACCATATCCTTCAACGACATAAAGCAACAGTTTGGAAATGGCAGTTGA

mRNA sequence

ATGGTGGATCAAGAAAATGGAAGAGACCTCACCGGAGGTTTCTCCAGTGAACGACTCACGTTTAAGAAGGTCGAGATGCCGATCTTTGGAGGGGATGATCCCGATTCTTGGCATTTTCGTGCTGAAAGGTATTTCCAACTTTACAAGGTAATTTACATGACAGGATGGAAGGAACATCCTTCCCAACAGAAGGCCAAAAGAAGAGGATCTGCAACCATATCCTTCAACGACATAAAGCAACAGTTTGGAAATGGCAGTTGA

Coding sequence (CDS)

ATGGTGGATCAAGAAAATGGAAGAGACCTCACCGGAGGTTTCTCCAGTGAACGACTCACGTTTAAGAAGGTCGAGATGCCGATCTTTGGAGGGGATGATCCCGATTCTTGGCATTTTCGTGCTGAAAGGTATTTCCAACTTTACAAGGTAATTTACATGACAGGATGGAAGGAACATCCTTCCCAACAGAAGGCCAAAAGAAGAGGATCTGCAACCATATCCTTCAACGACATAAAGCAACAGTTTGGAAATGGCAGTTGA

Protein sequence

MVDQENGRDLTGGFSSERLTFKKVEMPIFGGDDPDSWHFRAERYFQLYKVIYMTGWKEHPSQQKAKRRGSATISFNDIKQQFGNGS

Homology

[Close]

BLAST of Lag0039664 vs. NCBI nr
Match: XP_024026649.1 (putative methyltransferase At1g22800, mitochondrial [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 8.7e-11
Identity = 34/39 (87.18%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 48  YKVIYMTGWKEHPSQQKAKRRGSATISFNDIKQQFGNGS 87
           ++VIYMTGWKEHPSQQKAKRRGSATISFNDI++QFG+GS
Sbjct: 303 FQVIYMTGWKEHPSQQKAKRRGSATISFNDIQEQFGSGS 341

[Close]

BLAST of Lag0039664 vs. NCBI nr
Match: EXC01132.1 (Uncharacterized protein L484_025505 [Morus notabilis])

HSP 1 Score: 77.0 bits (188), Expect = 8.7e-11
Identity = 34/39 (87.18%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 48  YKVIYMTGWKEHPSQQKAKRRGSATISFNDIKQQFGNGS 87
           ++VIYMTGWKEHPSQQKAKRRGSATISFNDI++QFG+GS
Sbjct: 304 FQVIYMTGWKEHPSQQKAKRRGSATISFNDIQEQFGSGS 342

[Close]

BLAST of Lag0039664 vs. NCBI nr
Match: XP_022719815.1 (putative methyltransferase At1g22800, mitochondrial isoform X1 [Durio zibethinus] >XP_022719816.1 putative methyltransferase At1g22800, mitochondrial isoform X1 [Durio zibethinus])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 48  YKVIYMTGWKEHPSQQKAKRRGSATISFNDIKQQFGNGS 87
           ++VIYMTGWKEHPSQQKAKRRGSAT+SFNDI++QFG+GS
Sbjct: 314 FQVIYMTGWKEHPSQQKAKRRGSATVSFNDIQKQFGSGS 352

[Close]

BLAST of Lag0039664 vs. NCBI nr
Match: XP_022719817.1 (putative methyltransferase At1g22800, mitochondrial isoform X2 [Durio zibethinus])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 33/39 (84.62%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 48  YKVIYMTGWKEHPSQQKAKRRGSATISFNDIKQQFGNGS 87
           ++VIYMTGWKEHPSQQKAKRRGSAT+SFNDI++QFG+GS
Sbjct: 313 FQVIYMTGWKEHPSQQKAKRRGSATVSFNDIQKQFGSGS 351

[Close]

BLAST of Lag0039664 vs. NCBI nr
Match: KJB81263.1 (hypothetical protein B456_013G134900 [Gossypium raimondii])

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 37  WHFRAERY-FQLYKVIYMTGWKEHPSQQKAKRRGSATISFNDIKQQFGNGS 87
           WHF      F   KVIYMTGW+EHPSQQK+KRRGSATISF DI++QFGNGS
Sbjct: 330 WHFPHHLISFFKSKVIYMTGWREHPSQQKSKRRGSATISFKDIQKQFGNGS 380

[Close]

BLAST of Lag0039664 vs. ExPASy Swiss-Prot
Match: O80543 (Putative methyltransferase At1g22800, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g22800 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 48  YKVIYMTGWKEHPSQQKAKRRGSATISFNDIKQQFGNGS 87
           ++VIYMTGW+EH S  +AKRRGSAT+SF D+++QFG  S
Sbjct: 317 FQVIYMTGWREHSSHPQAKRRGSATVSFTDLQKQFGGQS 355

The following BLAST results are available for this feature:

BLAST of Lag0039664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024026649.1	8.7e-11	87.18	putative methyltransferase At1g22800, mitochondrial [Morus notabilis]	[more]
EXC01132.1	8.7e-11	87.18	Uncharacterized protein L484_025505 [Morus notabilis]	[more]
XP_022719815.1	1.5e-10	84.62	putative methyltransferase At1g22800, mitochondrial isoform X1 [Durio zibethinus...	[more]
XP_022719817.1	1.5e-10	84.62	putative methyltransferase At1g22800, mitochondrial isoform X2 [Durio zibethinus...	[more]
KJB81263.1	1.9e-10	72.55	hypothetical protein B456_013G134900 [Gossypium raimondii]	[more]

BLAST of Lag0039664 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80543	1.9e-08	64.10	Putative methyltransferase At1g22800, mitochondrial OS=Arabidopsis thaliana OX=3...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039664.1	Lag0039664.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0008168	methyltransferase activity