Lag0039652 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039652
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr2: 47829873 .. 47832137 (-)
RNA-Seq Expression	Lag0039652
Synteny	Lag0039652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTTGTAGAACCAAGAAATTTCGATGGAGTCACGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACTGACGACGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGTCCATGAGACAACTACGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAAACCCTCTGCGAATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACTACTTTGATTAATCAGTTAAAATCTGTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTGGACTAGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTTGTAGACAGGGTAGTAATAAAGAGTCTAATGTAGGGTCAGCTTTGGCTATGACTAAAGGTAAAGATAAGATTATCAAGATAATGAACCGAGTAGCAGTAGGAAAAAGTGGAAAAATAGGAATGAGGTAGAATTTTTTTACTGCCACGAGAAAGGTCACTTCAAGAGTCAGTGTAGAAAACTTAAAGAGGATCAGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTGACACAAAGTGTAGTAACCATTTATCAGATTGGATATTAGACAGTGCAGCGTCTGTACACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGCAGATGATGGTTACAGGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTCAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGCCAGTTAAAGCTGCGGATGATCCAGCAGCAAAGATAGCCAATTTCGATCAGTCCGATCACGGTCCTTCAATTCAGAAACAATTAGGAAGTCCAGGAGAGGAAGTTGATGGCTATCGTGAATCCCCAATTGTCAGACTCTCGAATGAATTGAAGAAGTGGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGGTCAGGTCTCTAGCTTGGCAACAGGTTTGAATAGAGGATTCAAGCCATTCTTCTTCAGGAACAGTCATTCAAGTTGGAAGAAGATAACAGGAGTCACCACTTAGCTGAAGTGGGAGTACGTGTCTGTCTTTTTCGTCTGGGAGACAGGTCCACGTAGCTAGCCCATACCTTGGGGCGAGCACAGATAAGCTACAGTTATATTCTGATAGTTGCCTGTTTTTGTGAGTTTGTTGTTTTTCAGGTATTTTGAGCCTTGGAGTTTTTACCAAGAATATCATAAATAACAGTTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGATTAGAGTTTTGCTGGAGTGGGAGACGTGTTGCTTGTTTTGTCTTCAAGTGGGAGATTGTTGAGTTTTGGAGCCCAAAACAAGACCCATCAAATTCATGCAGCAAGAAATGCATGCGGCGAGTAGGGGTGAGCATCGGTCGGTCGGGGTCGGTTTTGGCCCCAAACCGACACCGAACCGACCAAAATCGGTTTCCAAAACTGGAAACCGATTTTTTTAAAAAACTCATTTTCGCCGACCGACTGACCGCCGATCGGTTCGGTCGGTTTAGTAGGTTTAAAACCGACTTCCATTTTGTTTTAAAACACAAAAAAAAGATATCGAAGACAAGAGACGAAGAACGGCGAGCGACAAGTTTCAGATGAAGAACGGTGGGTGGCGAGCGACAAGTTTCCGACGAAGGCGACAACACTGGTTTCAGACGAAGAACGGCGACGAGTTTCAGAAGATGAAGAACAAAAAGAAATCGAAGGAGAGGGCTACGGTTTCCCTGTCGATTTTCCGCCTGTCGAGTGTCGATTCGCCGCTTAG

mRNA sequence

ATGGGTTTTGTAGAACCAAGAAATTTCGATGGAGTCACGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACTGACGACGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGTCCATGAGACAACTACGGTTAAATTGATGGAAGCACTTACAAACAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTGGACTAGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTTGTAGACAGGGTAGTAATAAAGAGTCTAATGTAGGGTCAGCTTTGGCTATGACTAAAGGTCACTTCAAGAGTCAGTGTAGAAAACTTAAAGAGGATCAGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTGACACAAAGTGTAGTAACCATTTATCAGATTGGATATTAGACAGTGCAGCGTCTGTACACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGCAGATGATGGTTACAGGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTCAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGCCAGTTAAAGCTGCGGATGATCCAGCAGCAAAGATAGCCAATTTCGATCAGTCCGATCACGGTCCTTCAATTCAGAAACAATTAGGAAGTCCAGGAGAGGAAGTTGATGGCTATCGTGAATCCCCAATTGTCAGACTCTCGAATGAATTGAAGAAGTGGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGGTCAGGTCTCTAGCTTGGCAACAGGTATTTTGAGCCTTGGAGTTTTTACCAAGAATATCATAAATAACAGTTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGATTAGAGTTTTGCTGGAGTGGGAGACATATCGAAGACAAGAGACGAAGAACGGCGAGCGACAAGTTTCAGATGAAGAACGGTGGGTGGCGAGCGACAAGTTTCCGACGAAGGCGACAACACTGGTTTCAGACGAAGAACGGCGACGAGTTTCAGAAGATGAAGAACAAAAAGAAATCGAAGGAGAGGGCTACGGTTTCCCTGTCGATTTTCCGCCTGTCGAGTGTCGATTCGCCGCTTAG

Coding sequence (CDS)

ATGGGTTTTGTAGAACCAAGAAATTTCGATGGAGTCACGAAGTTCGATGGGAAAAATTTTGGATATTGGAAGATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACTGACGACGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGTCCATGAGACAACTACGGTTAAATTGATGGAAGCACTTACAAACAGTTGGGAAACGATGAAGACAGCAGTGTCTAATTGGACTAGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTTGTAGACAGGGTAGTAATAAAGAGTCTAATGTAGGGTCAGCTTTGGCTATGACTAAAGGTCACTTCAAGAGTCAGTGTAGAAAACTTAAAGAGGATCAGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTGACACAAAGTGTAGTAACCATTTATCAGATTGGATATTAGACAGTGCAGCGTCTGTACACATAGCTTCAGATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAAATTGGCAGATGATGGTTACAGGTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACACTGTACAAATGTCAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGCCAGTTAAAGCTGCGGATGATCCAGCAGCAAAGATAGCCAATTTCGATCAGTCCGATCACGGTCCTTCAATTCAGAAACAATTAGGAAGTCCAGGAGAGGAAGTTGATGGCTATCGTGAATCCCCAATTGTCAGACTCTCGAATGAATTGAAGAAGTGGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAGTTGGTCAGGTCTCTAGCTTGGCAACAGGTATTTTGAGCCTTGGAGTTTTTACCAAGAATATCATAAATAACAGTTGTAGTGGGAGTAGATCCTTGGAGTTTGCCAAGATGATTAGAGTTTTGCTGGAGTGGGAGACATATCGAAGACAAGAGACGAAGAACGGCGAGCGACAAGTTTCAGATGAAGAACGGTGGGTGGCGAGCGACAAGTTTCCGACGAAGGCGACAACACTGGTTTCAGACGAAGAACGGCGACGAGTTTCAGAAGATGAAGAACAAAAAGAAATCGAAGGAGAGGGCTACGGTTTCCCTGTCGATTTTCCGCCTGTCGAGTGTCGATTCGCCGCTTAG

Protein sequence

MGFVEPRNFDGVTKFDGKNFGYWKMQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVVHETTTVKLMEALTNSWETMKTAVSNWTRNNTLKFSEVCDLAIAEEICRQGSNKESNVGSALAMTKGHFKSQCRKLKEDQKRKHEANTVYDALVCVESDTKCSNHLSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLYKCQLDVAKRSRRQWMPVKAADDPAAKIANFDQSDHGPSIQKQLGSPGEEVDGYRESPIVRLSNELKKWLRRVEASKWKAKAVGQVSSLATGILSLGVFTKNIINNSCSGSRSLEFAKMIRVLLEWETYRRQETKNGERQVSDEERWVASDKFPTKATTLVSDEERRRVSEDEEQKEIEGEGYGFPVDFPPVECRFAA

Homology

[Close]

BLAST of Lag0039652 vs. NCBI nr
Match: KAB5561215.1 (hypothetical protein DKX38_006172 [Salix brachista])

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-44
Identity = 106/288 (36.81%), Postives = 168/288 (58.33%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ K DG++FGYWKMQ++DYL  +KLH   L +KP+ M D++W +LD + +  IR+ L+ 
Sbjct: 10  GIEKIDGRDFGYWKMQIEDYLYEKKLHLPLLGQKPEAMKDEEWISLDRQVLGLIRLTLTR 69

Query: 71  DVASLVVHETTTVKLMEALTNSWETMKTAVSNWTRNNTLKFSEVCDLAIAEEICRQGSNK 130
            VA  V+ E TT  LM  L+  WE M+T +SN    + L + ++ DL + EE+ R+ + +
Sbjct: 70  KVAHNVIKERTTAGLMTVLSGIWEAMRTTISNSAGKSKLNYDDIRDLILGEEVRRRDAGE 129

Query: 131 ESNVGSALAM-TKGHFKSQCRKLKEDQKRKHEANTV----YDALVCVESDTKCSNHLSDW 190
            S  GS L + T+GH ++ C K+K++   K  ANTV    ++AL+        S+ L  W
Sbjct: 130 SSTSGSTLNVETRGHIQANCYKMKKEDDDK-SANTVAEEGHEALL-----LSVSSPLDSW 189

Query: 191 ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVR 250
           +LDS AS H    +++  ++  G +G+V + +G   +  GIGDV +K        L+ VR
Sbjct: 190 VLDSGASFHTTPHQNILQNYVAGDYGVVYLADGEPLRIIGIGDVEIKLPNNSTWRLQQVR 249

Query: 251 FVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLY 293
            VP +K NLIS+G+L + G+   F     K++ G  ++A G +  TLY
Sbjct: 250 HVPELKKNLISVGQLDESGHSINFAGGIWKVSKGVMILARGKKIGTLY 291

[Close]

BLAST of Lag0039652 vs. NCBI nr
Match: RVW69025.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-43
Identity = 115/307 (37.46%), Postives = 165/307 (53.75%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG +F YW+MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFVYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVVHETTTVKLMEALT------------------NSWETMKTAVSNWTRNNTLKFS 130
            VA  VV E TT  LM+AL+                  NSWE M+ AVSN T     K++
Sbjct: 70  SVAHNVVKEKTTADLMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKFKYN 129

Query: 131 EVCDLAIAEEICRQGSNKESNVGSALAMT---KGHFKSQC---RKLKEDQKRKHEANTVY 190
           ++ DL +AEEI R+ + + S  GSAL +    +GHFK QC   +K  ED         + 
Sbjct: 130 DIRDLILAEEIRRRDAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEIQ 189

Query: 191 DALVCVESDTKCSNHLSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGI 250
           DAL+         + L DW+LDS AS H    R +  ++  G  G V + +G      G+
Sbjct: 190 DALLLA-----VDSPLDDWVLDSGASFHTTPHREIIQNYVAGGFGKVYLADGSALDIVGL 249

Query: 251 GDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVG 293
           GDV +    G   +L  VR +P+++ NLIS+G+L D+G+   F     K+T G++V+A G
Sbjct: 250 GDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARG 309

[Close]

BLAST of Lag0039652 vs. NCBI nr
Match: CAN80650.1 (hypothetical protein VITISV_022906 [Vitis vinifera])

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-42
Identity = 113/289 (39.10%), Postives = 160/289 (55.36%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG  F YW+MQ++DYL  RKLH   L  KP+ M  ++W  LD++ +  IR+ LS 
Sbjct: 10  GIEKFDGTYFAYWRMQIEDYLYRRKLHLPLLGTKPESMKAEEWALLDKQVLEVIRLTLSR 69

Query: 71  DVASLVVHETTTVKLMEALTNSWETMKTAVSNWTRNNTLKFSEVCDLAIAEEICRQGSNK 130
            VA  VV E TT  LM+AL+   E M+  VSN T    LK++++ DL + EEI R+ + +
Sbjct: 70  SVAHNVVKEKTTTDLMKALS---EAMRMVVSNSTGKEKLKYNDIRDLILVEEIRRRDAGE 129

Query: 131 ESNVGSALAMT---KGHFKSQC---RKLKEDQKRKHEANTVYDALVCVESDTKCSNHLSD 190
            S  GSAL +    KGHFK QC   +K  ED         V DAL+         + L D
Sbjct: 130 TSRSGSALNLKTRGKGHFKRQCKNPKKKNEDDSANAVTEEVQDALLLT-----VDSPLDD 189

Query: 191 WILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDV 250
           W+LDS  S H    R +  ++  G  G V + +G      G+GDV +    G   +L  V
Sbjct: 190 WVLDSGTSFHTIPHREIIQNYIAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 249

Query: 251 RFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLY 293
           R +P+++ NLISIG+L D+G+   F     K+T G++V+A G +  TLY
Sbjct: 250 RHIPDLRRNLISIGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 290

[Close]

BLAST of Lag0039652 vs. NCBI nr
Match: RVW76343.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 183.0 bits (463), Expect = 6.4e-42
Identity = 114/312 (36.54%), Postives = 163/312 (52.24%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG +F YW+MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVVHETTTVKLMEALTNSW-----------------------ETMKTAVSNWTRNN 130
            VA  VV E TT  LM+A +  +                       E M+ AVSN T   
Sbjct: 70  SVAHNVVKEKTTADLMKAFSGMYEKPSANNKVHLMKKLFNLKMAENEAMRMAVSNSTGKE 129

Query: 131 TLKFSEVCDLAIAEEICRQGSNKESNVGSALAMT---KGHFKSQC---RKLKEDQKRKHE 190
            LK++++ DL +AEEI R+ + + S   SAL +    KGHFK QC   +K  ED      
Sbjct: 130 KLKYNDIRDLILAEEIRRRDAGETSGSSSALNLETRGKGHFKRQCKSPKKKNEDDSANAV 189

Query: 191 ANTVYDALVCVESDTKCSNHLSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTS 250
              V+DAL+         + L DW+LDS AS H    R +  ++  G  G V + +G   
Sbjct: 190 TEEVHDALLFA-----VDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSAL 249

Query: 251 KTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQ 293
              G+GDV +    G   +L  VR +P+++ NLIS+G+L D+GY   F     K+T G++
Sbjct: 250 DVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGYAILFVGGTWKVTKGAR 309

[Close]

BLAST of Lag0039652 vs. NCBI nr
Match: VFQ62075.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 177.2 bits (448), Expect = 3.5e-40
Identity = 126/404 (31.19%), Postives = 196/404 (48.51%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLHKALK-EKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG +FG+WKMQ++DYL  + LH+ L   KP  MT++ W+  D +A+  I + L+ 
Sbjct: 7   GIEKFDGSDFGFWKMQIEDYLYQKDLHEPLTGVKPDSMTEEQWKLKDRQALGMIWLTLTK 66

Query: 71  DVASLVVHETTTVKLMEALTN--------------------SWETMKTAVSNWTRNNTLK 130
           +VA  +V E TT  L++AL+N                    SW+T+  A+S+   +  LK
Sbjct: 67  NVAFNIVKENTTAGLLKALSNMYEKPSAMNKALILLSSMPESWDTVVAAISSSRGSEKLK 126

Query: 131 FSEVCDLAIAEEICRQ--------------------------GSNKESNVGSALAMT--- 190
           F E+ D+ ++E I ++                          G +K  N G +   +   
Sbjct: 127 FDEIHDVVLSESIRKREMGDSSGSALSVDRRGRSKFKGQHQHGRSKSKNRGKSPNRSNIT 186

Query: 191 ------KGHFKSQCRKLKEDQKRK--------HEANTVYDALVCVESDTKCSNHLSDWIL 250
                 KGHFK+ C+K K+ Q +K        + A  + DAL+         + +  WIL
Sbjct: 187 CWNCGDKGHFKADCKKPKKKQNQKSGDDGDSVNSAEDIGDALI-----LSVDSPVESWIL 246

Query: 251 DSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFV 310
           DS AS H +S    F +F  G+ G V + + +     G GDVS+KT  G++  L+DVR++
Sbjct: 247 DSGASFH-SSPSKEFQNFKSGNFGKVYLADNKALVIEGKGDVSIKTPAGNQWTLKDVRYI 306

Query: 311 PNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLYKCQLDVAKRSRRQW 351
           P +K NLISIG+L + GY  EFG    K+  G+ VVA G +  TLY        ++R+  
Sbjct: 307 PGLKKNLISIGQLDNKGYAAEFGKGSWKIVKGAMVVARGTKFGTLYTTAGFWDDKNRKIL 366

[Close]

BLAST of Lag0039652 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-23
Identity = 67/172 (38.95%), Postives = 99/172 (57.56%), Query Frame = 0


Query: 142 GHFKSQC---RKLK-EDQKRKHEANTVY------DALVCVESDTKC---SNHLSDWILDS 201
           GHFK  C   RK K E   +K++ NT        + ++ +  + +C   S   S+W++D+
Sbjct: 239 GHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDT 298

Query: 202 AASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPN 261
           AAS H    R LF  +  G  G V+MGN   SK +GIGD+ +KT  G  LVL+DVR VP+
Sbjct: 299 AASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPD 358

Query: 262 IKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLYKCQLDVAK 301
           ++MNLIS   L  DGY   F +++ +LT GS V+A G  + TLY+   ++ +
Sbjct: 359 LRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQ 410

[Close]

BLAST of Lag0039652 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-05
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 182 SDWILDSAASVHIASD---RSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKL 241
           ++W+LDS A+ HI SD    SL   +TGG    V + +G T   S  G  SL T+    L
Sbjct: 329 NNWLLDSGATHHITSDFNNLSLHQPYTGGDD--VMVADGSTIPISHTGSTSLSTK-SRPL 388

Query: 242 VLRDVRFVPNIKMNLISIGKLAD-DGYRCEF--GSRQCKLTFGSQVVAVGHRKSTLYK 294
            L ++ +VPNI  NLIS+ +L + +G   EF   S Q K       +  G  K  LY+
Sbjct: 389 NLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYE 443

[Close]

BLAST of Lag0039652 vs. ExPASy Swiss-Prot
Match: P25601 (Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5B PE=5 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-05
Identity = 30/88 (34.09%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 169 VCVESDTKCSNHLSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDV 228
           +C+ S T  +   S+WI D+  + H+  DRS+F+SFT         G G +    G G V
Sbjct: 64  LCMLSSTVPATKSSEWIFDTGCTSHMCHDRSIFSSFTRSSRKDFVRGVGGSIPIMGSGTV 123

Query: 229 SLKTECGDKLVLRDVRFVPNIKMNLISI 257
           ++ T     + L DV +VP++ +NLIS+
Sbjct: 124 NIGT-----VQLHDVSYVPDLPVNLISV 146

[Close]

BLAST of Lag0039652 vs. ExPASy TrEMBL
Match: A0A5N5N166 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_006172 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.9e-44
Identity = 106/288 (36.81%), Postives = 168/288 (58.33%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ K DG++FGYWKMQ++DYL  +KLH   L +KP+ M D++W +LD + +  IR+ L+ 
Sbjct: 10  GIEKIDGRDFGYWKMQIEDYLYEKKLHLPLLGQKPEAMKDEEWISLDRQVLGLIRLTLTR 69

Query: 71  DVASLVVHETTTVKLMEALTNSWETMKTAVSNWTRNNTLKFSEVCDLAIAEEICRQGSNK 130
            VA  V+ E TT  LM  L+  WE M+T +SN    + L + ++ DL + EE+ R+ + +
Sbjct: 70  KVAHNVIKERTTAGLMTVLSGIWEAMRTTISNSAGKSKLNYDDIRDLILGEEVRRRDAGE 129

Query: 131 ESNVGSALAM-TKGHFKSQCRKLKEDQKRKHEANTV----YDALVCVESDTKCSNHLSDW 190
            S  GS L + T+GH ++ C K+K++   K  ANTV    ++AL+        S+ L  W
Sbjct: 130 SSTSGSTLNVETRGHIQANCYKMKKEDDDK-SANTVAEEGHEALL-----LSVSSPLDSW 189

Query: 191 ILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVR 250
           +LDS AS H    +++  ++  G +G+V + +G   +  GIGDV +K        L+ VR
Sbjct: 190 VLDSGASFHTTPHQNILQNYVAGDYGVVYLADGEPLRIIGIGDVEIKLPNNSTWRLQQVR 249

Query: 251 FVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLY 293
            VP +K NLIS+G+L + G+   F     K++ G  ++A G +  TLY
Sbjct: 250 HVPELKKNLISVGQLDESGHSINFAGGIWKVSKGVMILARGKKIGTLY 291

[Close]

BLAST of Lag0039652 vs. ExPASy TrEMBL
Match: A0A438G9X7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1074 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.6e-44
Identity = 115/307 (37.46%), Postives = 165/307 (53.75%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG +F YW+MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFVYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVVHETTTVKLMEALT------------------NSWETMKTAVSNWTRNNTLKFS 130
            VA  VV E TT  LM+AL+                  NSWE M+ AVSN T     K++
Sbjct: 70  SVAHNVVKEKTTADLMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKFKYN 129

Query: 131 EVCDLAIAEEICRQGSNKESNVGSALAMT---KGHFKSQC---RKLKEDQKRKHEANTVY 190
           ++ DL +AEEI R+ + + S  GSAL +    +GHFK QC   +K  ED         + 
Sbjct: 130 DIRDLILAEEIRRRDAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDSANAVTEEIQ 189

Query: 191 DALVCVESDTKCSNHLSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGI 250
           DAL+         + L DW+LDS AS H    R +  ++  G  G V + +G      G+
Sbjct: 190 DALLLA-----VDSPLDDWVLDSGASFHTTPHREIIQNYVAGGFGKVYLADGSALDIVGL 249

Query: 251 GDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVG 293
           GDV +    G   +L  VR +P+++ NLIS+G+L D+G+   F     K+T G++V+A G
Sbjct: 250 GDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARG 309

[Close]

BLAST of Lag0039652 vs. ExPASy TrEMBL
Match: A5B0E4 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_022906 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.2e-43
Identity = 113/289 (39.10%), Postives = 160/289 (55.36%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG  F YW+MQ++DYL  RKLH   L  KP+ M  ++W  LD++ +  IR+ LS 
Sbjct: 10  GIEKFDGTYFAYWRMQIEDYLYRRKLHLPLLGTKPESMKAEEWALLDKQVLEVIRLTLSR 69

Query: 71  DVASLVVHETTTVKLMEALTNSWETMKTAVSNWTRNNTLKFSEVCDLAIAEEICRQGSNK 130
            VA  VV E TT  LM+AL+   E M+  VSN T    LK++++ DL + EEI R+ + +
Sbjct: 70  SVAHNVVKEKTTTDLMKALS---EAMRMVVSNSTGKEKLKYNDIRDLILVEEIRRRDAGE 129

Query: 131 ESNVGSALAMT---KGHFKSQC---RKLKEDQKRKHEANTVYDALVCVESDTKCSNHLSD 190
            S  GSAL +    KGHFK QC   +K  ED         V DAL+         + L D
Sbjct: 130 TSRSGSALNLKTRGKGHFKRQCKNPKKKNEDDSANAVTEEVQDALLLT-----VDSPLDD 189

Query: 191 WILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDV 250
           W+LDS  S H    R +  ++  G  G V + +G      G+GDV +    G   +L  V
Sbjct: 190 WVLDSGTSFHTIPHREIIQNYIAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKV 249

Query: 251 RFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQVVAVGHRKSTLY 293
           R +P+++ NLISIG+L D+G+   F     K+T G++V+A G +  TLY
Sbjct: 250 RHIPDLRRNLISIGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 290

[Close]

BLAST of Lag0039652 vs. ExPASy TrEMBL
Match: A0A438GVW5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1954 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.1e-42
Identity = 114/312 (36.54%), Postives = 163/312 (52.24%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG +F YW+MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVVHETTTVKLMEALTNSW-----------------------ETMKTAVSNWTRNN 130
            VA  VV E TT  LM+A +  +                       E M+ AVSN T   
Sbjct: 70  SVAHNVVKEKTTADLMKAFSGMYEKPSANNKVHLMKKLFNLKMAENEAMRMAVSNSTGKE 129

Query: 131 TLKFSEVCDLAIAEEICRQGSNKESNVGSALAMT---KGHFKSQC---RKLKEDQKRKHE 190
            LK++++ DL +AEEI R+ + + S   SAL +    KGHFK QC   +K  ED      
Sbjct: 130 KLKYNDIRDLILAEEIRRRDAGETSGSSSALNLETRGKGHFKRQCKSPKKKNEDDSANAV 189

Query: 191 ANTVYDALVCVESDTKCSNHLSDWILDSAASVHIASDRSLFTSFTGGHHGLVRMGNGRTS 250
              V+DAL+         + L DW+LDS AS H    R +  ++  G  G V + +G   
Sbjct: 190 TEEVHDALLFA-----VDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSAL 249

Query: 251 KTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGKLADDGYRCEFGSRQCKLTFGSQ 293
              G+GDV +    G   +L  VR +P+++ NLIS+G+L D+GY   F     K+T G++
Sbjct: 250 DVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGYAILFVGGTWKVTKGAR 309

[Close]

BLAST of Lag0039652 vs. ExPASy TrEMBL
Match: A5BPB3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034935 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.7e-40
Identity = 117/344 (34.01%), Postives = 165/344 (47.97%), Query Frame = 0


Query: 11  GVTKFDGKNFGYWKMQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSM 70
           G+ KFDG +F YW+MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS 
Sbjct: 10  GIEKFDGTDFAYWRMQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSR 69

Query: 71  DVASLVVHETTTVKLMEALT------------------NSWETMKTAVSNWTRNNTLKFS 130
            VA  VV E TT  LM+AL+                  NSWE M+ AVSN T    LK++
Sbjct: 70  SVAHNVVKEKTTADLMKALSEIDFDDEIRALIVLASLPNSWEAMRMAVSNSTGKEKLKYN 129

Query: 131 EVCDLAIAEEICRQGSNKESNVGSALAM-------------------------------- 190
           ++ DL +AEEI R+ + + S  GSAL +                                
Sbjct: 130 DIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQ 189

Query: 191 --------TKGHFKSQC---RKLKEDQKRKHEANTVYDALVCVESDTKCSNHLSDWILDS 250
                     GHFK QC   +K  ED         V DAL+         + L DW+LDS
Sbjct: 190 QVQCWNCGKTGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLA-----VDSPLDDWVLDS 249

Query: 251 AASVHIASDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPN 293
            AS H    R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+
Sbjct: 250 GASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPD 309

[Close]

BLAST of Lag0039652 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 1.2e-06
Identity = 27/84 (32.14%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 14 KFDGKNFGYWKMQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVAS 73
          K DG ++ + +M+++DYL  +KLH+ L +K + M+ DDW  L  + +  IR+ +S ++A 
Sbjct: 8  KVDGTSYSFCRMKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAH 67

Query: 74 LVVHETTTVKLMEALTNSWETMKT 98
           V  E +   LM+ L++ ++   T
Sbjct: 68 NVAKEKSPDGLMKVLSDIYKKPST 91

[Close]

BLAST of Lag0039652 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-04
Identity = 32/134 (23.88%), Postives = 53/134 (39.55%), Query Frame = 0


Query: 137 LAMTKGHFKSQCRKLKEDQKRKHEANTVYDALVCVESDTKCSNHLSD-WILDSAASVHIA 196
           L     H +  C+      K + E   V D  +    +     +  D WI+   A +++ 
Sbjct: 232 LCYKNNHNQEDCKFRIHTDKEEKEDEIVVDYRLETVPNLGAKTYDDDIWIIHKMAPINMT 291

Query: 197 SDRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLIS 256
                FT+        V   +G      G GDV ++ + G K  +R+V FVP +  N++S
Sbjct: 292 PYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLS 351

Query: 257 IGKLADDGYRCEFG 270
            GK+    Y    G
Sbjct: 352 FGKMVSKRYSISTG 365

The following BLAST results are available for this feature:

BLAST of Lag0039652 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB5561215.1	4.0e-44	36.81	hypothetical protein DKX38_006172 [Salix brachista]	[more]
RVW69025.1	1.2e-43	37.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN80650.1	1.3e-42	39.10	hypothetical protein VITISV_022906 [Vitis vinifera]	[more]
RVW76343.1	6.4e-42	36.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
VFQ62075.1	3.5e-40	31.19	unnamed protein product [Cuscuta campestris]	[more]

BLAST of Lag0039652 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.4e-23	38.95	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	1.7e-05	36.44	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P25601	2.9e-05	34.09	Putative transposon Ty5-1 protein YCL075W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Lag0039652 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5N166	1.9e-44	36.81	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_006172 PE=4 SV=1	[more]
A0A438G9X7	5.6e-44	37.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5B0E4	6.2e-43	39.10	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438GVW5	3.1e-42	36.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5BPB3	1.7e-40	34.01	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034935 PE=4 SV=1	[more]

BLAST of Lag0039652 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29785.1	1.2e-06	32.14	unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact...	[more]
AT3G21000.1	1.1e-04	23.88	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 447..476
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 449..472
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 12..93
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 12..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039652.1	Lag0039652.1	mRNA