Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAGAGCTTTACGTTACAACCAACGATATAGGTGAATGGACGTGGTCGTGTTTATCGGATTTCAAACTGCTCACTGTCCTCAAGATTACACGTCGAAAGTTAAATAACTTCGGATTCTTGGTGTTACCTCGTTTGAGAATTTTAGAGGTTAAAAGGCTGTTATCGCATTCCTTGGATGATTACATCGACTATGAACAGGACGTCAATGAGTACCACAAAAAATTGAAACGCAACGGCGACCTACCATTGAATGAAAAGACATTCACAGGTTGTCCAAATTTGGAATGTTTAGTTTTAATTGATTGTCTATTCGCAAGTGTTTGTATTTCTGCTCCAAAACTTGAGAGCTTGGAGCTAAGTGCTCTAAGATCTCTACCATTTTGTCCGGAAGTTGAGTTGTGTACACCAAATCTGAAAAGGGTCAAGCTTAGCAATGTTGTACCTTGTGTGAAGTCTGCTTCTGACTTACTGTACATAGACAAGCTAACCTTAGCAAATGATAACTATGTAAGAAGGGAAAAGATCTCTCAACTGCTCAGATTTTTTCATAATGCAGTGTCTCTTACGCTGCCTGAAAATGTAATACGGGTATCCATCTAA
mRNA sequence
ATGGCTCAAGAGCTTTACGTTACAACCAACGATATAGGTGAATGGACGTGGTCGTGTTTATCGGATTTCAAACTGCTCACTGTCCTCAAGATTACACGTCGAAAGTTAAATAACTTCGGATTCTTGGTGTTACCTCGTTTGAGAATTTTAGAGGTTAAAAGGCTGTTATCGCATTCCTTGGATGATTACATCGACTATGAACAGGACGTCAATGAGTACCACAAAAAATTGAAACGCAACGGCGACCTACCATTGAATGAAAAGACATTCACAGGTTGTCCAAATTTGGAATGTTTAGTTTTAATTGATTGTCTATTCGCAAGTGTTTGTATTTCTGCTCCAAAACTTGAGAGCTTGGAGCTAAGTGCTCTAAGATCTCTACCATTTTGTCCGGAAGTTGAGTTGTGTACACCAAATCTGAAAAGGGTCAAGCTTAGCAATGTTGTACCTTGTGTGAAGTCTGCTTCTGACTTACTGTACATAGACAAGCTAACCTTAGCAAATGATAACTATGTAAGAAGGGAAAAGATCTCTCAACTGCTCAGATTTTTTCATAATGCAGTGTCTCTTACGCTGCCTGAAAATGTAATACGGGTATCCATCTAA
Coding sequence (CDS)
ATGGCTCAAGAGCTTTACGTTACAACCAACGATATAGGTGAATGGACGTGGTCGTGTTTATCGGATTTCAAACTGCTCACTGTCCTCAAGATTACACGTCGAAAGTTAAATAACTTCGGATTCTTGGTGTTACCTCGTTTGAGAATTTTAGAGGTTAAAAGGCTGTTATCGCATTCCTTGGATGATTACATCGACTATGAACAGGACGTCAATGAGTACCACAAAAAATTGAAACGCAACGGCGACCTACCATTGAATGAAAAGACATTCACAGGTTGTCCAAATTTGGAATGTTTAGTTTTAATTGATTGTCTATTCGCAAGTGTTTGTATTTCTGCTCCAAAACTTGAGAGCTTGGAGCTAAGTGCTCTAAGATCTCTACCATTTTGTCCGGAAGTTGAGTTGTGTACACCAAATCTGAAAAGGGTCAAGCTTAGCAATGTTGTACCTTGTGTGAAGTCTGCTTCTGACTTACTGTACATAGACAAGCTAACCTTAGCAAATGATAACTATGTAAGAAGGGAAAAGATCTCTCAACTGCTCAGATTTTTTCATAATGCAGTGTCTCTTACGCTGCCTGAAAATGTAATACGGGTATCCATCTAA
Protein sequence
MAQELYVTTNDIGEWTWSCLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSLDDYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLESLELSALRSLPFCPEVELCTPNLKRVKLSNVVPCVKSASDLLYIDKLTLANDNYVRREKISQLLRFFHNAVSLTLPENVIRVSI
Homology
BLAST of Lag0039616 vs. NCBI nr
Match:
XP_038890213.1 (uncharacterized protein LOC120079853 [Benincasa hispida])
HSP 1 Score: 132.9 bits (333), Expect = 3.1e-27
Identity = 88/211 (41.71%), Postives = 124/211 (58.77%), Query Frame = 0
Query: 2 AQELYVTTNDIGEWTWSCLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSLD 61
A++L + T + WS LS K LT+L+I+ R ++ LVLP LR+L L + +
Sbjct: 58 AKKLCINTYCANDLLWSSLSACKFLTILQISCRVSSHLESLVLPSLRML----ALGNGVG 117
Query: 62 DYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLESLEL 121
D+ Y ++Y K D+PLNE TF+GCPNLECL+L L S + APKL++LEL
Sbjct: 118 DFSSYCY-YSDYDCK-----DMPLNESTFSGCPNLECLILFR-LRKSAHVFAPKLKNLEL 177
Query: 122 S----ALRSLPFCPEVELCTPNLKRVKLSNVVPCVKSASDLLYIDKLTLAND-NYVRR-- 181
+ + + PE+ LCTPNL+ V+ NV+PC+KSAS+ + + K+ + D NY R
Sbjct: 178 DNDTLSFSNKLYFPELVLCTPNLRSVEFRNVIPCLKSASEFVCVHKVYITVDNNYFGRGR 237
Query: 182 ------EKISQLLRFFHNAVSLTLPENVIRV 200
E +SQLLR FHNA S TLP N +V
Sbjct: 238 NQQKIKENLSQLLRVFHNATSFTLPPNAKQV 257
BLAST of Lag0039616 vs. NCBI nr
Match:
XP_038890212.1 (F-box/FBD/LRR-repeat protein At5g56420-like [Benincasa hispida])
HSP 1 Score: 124.0 bits (310), Expect = 1.4e-24
Identity = 90/190 (47.37%), Postives = 121/190 (63.68%), Query Frame = 0
Query: 3 QELYVTTNDIGEWTWSCLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSLDD 62
Q+L++TT + E WSCLS FKLLT+LKIT R +++ LVLP LRILE+KR L++ +
Sbjct: 121 QQLHITTYEAYESLWSCLSTFKLLTILKITCRPVSDLRTLVLPCLRILEIKRQLNYWDNP 180
Query: 63 YIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLF--ASVCISAPKLESLE 122
Y Y D EY L N D+ LNE TF+G PNLE LVL DC+ A + I APKLE+LE
Sbjct: 181 Y--YLDD--EY---LCYN-DVKLNENTFSGYPNLESLVLFDCVLENAGIVIYAPKLENLE 240
Query: 123 LSA-LRSLPFCPEVELCTPNLKRVKLSNVVPCV--KSA--SDLLYIDKLTLA---NDNYV 182
L A L F ++E PNLK V+L N++P V KS+ SD +YIDK++ A D+
Sbjct: 241 LDASFFGLTFL-KLEFYAPNLKTVELRNIIPSVNYKSSYNSDFVYIDKVSSAVPCYDDLG 300
BLAST of Lag0039616 vs. NCBI nr
Match:
XP_022141791.1 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica charantia])
HSP 1 Score: 100.1 bits (248), Expect = 2.2e-17
Identity = 78/204 (38.24%), Postives = 106/204 (51.96%), Query Frame = 0
Query: 3 QELYVTTNDIGEWTWS-CLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSLD 62
+ELY+ T I + W CLS LTVLK+ + ++G L LP LRILE++ +
Sbjct: 230 RELYLDTYYISVYDWKYCLSACSSLTVLKMVCGFVADWGVLTLPSLRILEIE---XEDCE 289
Query: 63 DYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLESLEL 122
D DY+ + F+GCPNL+ LVLI+ LF S I APKLE+L L
Sbjct: 290 DDADYK------------------GIRMFSGCPNLKSLVLINYLFESATICAPKLENLVL 349
Query: 123 SALRSLPFCPEVEL-CTPNLKRVKLSNVVPCVKSASDLLYIDKLTL--------ANDNYV 182
+ L F EVEL CT +L+ V SN++P V SA + I K+ + + + Y
Sbjct: 350 CSGNELVF-SEVELTCTSSLRNVTFSNMLPTVNSALEFSCIQKVNIEVHNYQFSSGNGYF 409
Query: 183 RREKI---SQLLRFFHNAVSLTLP 194
+ KI S+L R FHNA S LP
Sbjct: 410 CQNKIAAFSELFRVFHNARSFILP 411
BLAST of Lag0039616 vs. NCBI nr
Match:
XP_022141790.1 (F-box/FBD/LRR-repeat protein At1g16930-like [Momordica charantia])
HSP 1 Score: 95.9 bits (237), Expect = 4.2e-16
Identity = 69/155 (44.52%), Postives = 89/155 (57.42%), Query Frame = 0
Query: 3 QELYVTTNDIGEWTWSCLSDFKLLTVLKITRRKL-NNFGFLVLPRLRILEVKRLLSHSLD 62
+ELY+T + W CLS LTVLK++ + ++ G LVLP LRIL V+ L
Sbjct: 114 KELYITADSYDSTIW-CLSACDFLTVLKVSHVLVYHDLGSLVLPCLRILVVESLWKKP-- 173
Query: 63 DYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDC-LFASVCISAPKLESLE 122
Y+ D + G LNE+TF GCPNLECL LI+ S CISAP LESLE
Sbjct: 174 ---GYDDDGGGGY------GREQLNEETFLGCPNLECLTLINYGDLESTCISAPTLESLE 233
Query: 123 LSALR--SLPFCPEVELCTPNLKRVKLSNVVPCVK 154
+ A L F P+++LCTPNLKR K NV+P ++
Sbjct: 234 IGASSHWELTF-PKLKLCTPNLKRAKFENVLPFLR 255
BLAST of Lag0039616 vs. NCBI nr
Match:
XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])
HSP 1 Score: 95.5 bits (236), Expect = 5.5e-16
Identity = 75/204 (36.76%), Postives = 105/204 (51.47%), Query Frame = 0
Query: 3 QELYVTTND-IGEWTWS-CLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSL 62
Q+L + T D IG + W+ C S L LK+ ++++G L +P L+ILE++
Sbjct: 119 QQLCINTYDTIGIYDWNYCFSVCSSLIGLKMVCAFVHDWGVLAIPSLKILEIE------- 178
Query: 63 DDYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLESLE 122
D+ YE+D +K + F GCPNLE LVL+D LF S ISAPKL++L+
Sbjct: 179 CDW--YERDKEANYKGI----------TMFPGCPNLESLVLVDYLFESSTISAPKLKNLK 238
Query: 123 LSALRSLPFC-PEVELCTPNLKRVKLSNVVPCVKSASDLLYIDKLTL----------AND 182
L A + PEVEL TP L+ V NV+P VKS S+ I K+ + +
Sbjct: 239 LCASPRMELTFPEVELFTPTLETVNFINVLPIVKSDSEFSCIHKVDIQLKDSIFERVGSQ 298
Query: 183 NYVRREKISQLLRFFHNAVSLTLP 194
+ +LL FHNA S TLP
Sbjct: 299 TQKLKSNFRELLSVFHNARSFTLP 303
BLAST of Lag0039616 vs. ExPASy TrEMBL
Match:
A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)
HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 78/204 (38.24%), Postives = 106/204 (51.96%), Query Frame = 0
Query: 3 QELYVTTNDIGEWTWS-CLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSLD 62
+ELY+ T I + W CLS LTVLK+ + ++G L LP LRILE++ +
Sbjct: 230 RELYLDTYYISVYDWKYCLSACSSLTVLKMVCGFVADWGVLTLPSLRILEIE---XEDCE 289
Query: 63 DYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLESLEL 122
D DY+ + F+GCPNL+ LVLI+ LF S I APKLE+L L
Sbjct: 290 DDADYK------------------GIRMFSGCPNLKSLVLINYLFESATICAPKLENLVL 349
Query: 123 SALRSLPFCPEVEL-CTPNLKRVKLSNVVPCVKSASDLLYIDKLTL--------ANDNYV 182
+ L F EVEL CT +L+ V SN++P V SA + I K+ + + + Y
Sbjct: 350 CSGNELVF-SEVELTCTSSLRNVTFSNMLPTVNSALEFSCIQKVNIEVHNYQFSSGNGYF 409
Query: 183 RREKI---SQLLRFFHNAVSLTLP 194
+ KI S+L R FHNA S LP
Sbjct: 410 CQNKIAAFSELFRVFHNARSFILP 411
BLAST of Lag0039616 vs. ExPASy TrEMBL
Match:
A0A6J1CJ42 (F-box/FBD/LRR-repeat protein At1g16930-like OS=Momordica charantia OX=3673 GN=LOC111012076 PE=4 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 2.0e-16
Identity = 69/155 (44.52%), Postives = 89/155 (57.42%), Query Frame = 0
Query: 3 QELYVTTNDIGEWTWSCLSDFKLLTVLKITRRKL-NNFGFLVLPRLRILEVKRLLSHSLD 62
+ELY+T + W CLS LTVLK++ + ++ G LVLP LRIL V+ L
Sbjct: 114 KELYITADSYDSTIW-CLSACDFLTVLKVSHVLVYHDLGSLVLPCLRILVVESLWKKP-- 173
Query: 63 DYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDC-LFASVCISAPKLESLE 122
Y+ D + G LNE+TF GCPNLECL LI+ S CISAP LESLE
Sbjct: 174 ---GYDDDGGGGY------GREQLNEETFLGCPNLECLTLINYGDLESTCISAPTLESLE 233
Query: 123 LSALR--SLPFCPEVELCTPNLKRVKLSNVVPCVK 154
+ A L F P+++LCTPNLKR K NV+P ++
Sbjct: 234 IGASSHWELTF-PKLKLCTPNLKRAKFENVLPFLR 255
BLAST of Lag0039616 vs. ExPASy TrEMBL
Match:
A0A1S3CB41 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 1.0e-15
Identity = 72/209 (34.45%), Postives = 102/209 (48.80%), Query Frame = 0
Query: 3 QELYVTTNDIGEWTWS-CLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSLD 62
Q+L V T +IG + W C L LK+ ++++G L LP L+ILE++ S + D
Sbjct: 130 QQLCVNTYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWS-ARD 189
Query: 63 DYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLESLEL 122
+ +Y+ F+GCPNLE LVL+D LF S ISAP+LE+ +L
Sbjct: 190 ERANYD------------------GITMFSGCPNLESLVLVDYLFESATISAPRLENFKL 249
Query: 123 SALRSLPFC-PEVELCTPNLKRVKLSNVVPCVKSASDLLYIDKL----------TLANDN 182
A + P+VEL TP LK V NV+P ++S S+ I K+ T +
Sbjct: 250 CASHDMELTFPQVELLTPTLKAVNFVNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQT 309
Query: 183 YVRREKISQLLRFFHNAVSLTLPENVIRV 200
+ K LL HNA S TLP +V
Sbjct: 310 QELKSKFIDLLSVLHNASSFTLPMKATQV 319
BLAST of Lag0039616 vs. ExPASy TrEMBL
Match:
A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.7e-15
Identity = 70/203 (34.48%), Postives = 100/203 (49.26%), Query Frame = 0
Query: 3 QELYVTTNDIGEWTWS-CLSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHSLD 62
Q+L + T +IG + W C L LK+ ++++G L LP L+ILE++ S + D
Sbjct: 130 QQLCINTYNIGIYEWDYCFPICSSLIELKMVCGFVDDWGVLALPSLKILEIQCDWS-ARD 189
Query: 63 DYIDYEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLESLEL 122
+ +Y+ F+GCPNLE LVL+D LF S ISAP+LE+ +L
Sbjct: 190 ERANYD------------------GITMFSGCPNLESLVLVDYLFESATISAPRLENFKL 249
Query: 123 SALRSLPFC-PEVELCTPNLKRVKLSNVVPCVKSASDLLYIDKL----------TLANDN 182
A + P+VEL TP LK V NV+P ++S S+ I K+ T +
Sbjct: 250 CASHDMELTFPQVELLTPTLKAVNFVNVLPVLESDSEFSCIQKVDIQLKDSVFTTDGSQT 309
Query: 183 YVRREKISQLLRFFHNAVSLTLP 194
+ K LL HNA S TLP
Sbjct: 310 QELKSKFIDLLSVLHNASSFTLP 313
BLAST of Lag0039616 vs. ExPASy TrEMBL
Match:
A0A6J1CJ18 (LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820 OS=Momordica charantia OX=3673 GN=LOC111012046 PE=4 SV=1)
HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 66/168 (39.29%), Postives = 90/168 (53.57%), Query Frame = 0
Query: 1 MAQELYVTTNDIGEWTWSC-LSDFKLLTVLKITRRKLNNFGFLVLPRLRILEVKRLLSHS 60
+ QEL ++T + W C LS L VLKI +++ G L LRILE++
Sbjct: 124 VVQELCISTYKTIYYNWPCGLSTCSSLLVLKIKCGFVDDCGALKSASLRILEIE------ 183
Query: 61 LDDYID-YEQDVNEYHKKLKRNGDLPLNEKTFTGCPNLECLVLIDCLFASVCISAPKLES 120
D+ D Y++ NE + F+GCPNLE LVL++ LF S ISAPKLE+
Sbjct: 184 -CDWGDRYDRKYNEI--------------EMFSGCPNLESLVLVNYLFDSATISAPKLEN 243
Query: 121 LELSALRSLPFCPEVELCTPNLKRVKLSNVVPCVKSASDLLYIDKLTL 167
LEL A P+VEL P+LK +K NV+P +KSAS I K+ +
Sbjct: 244 LELCA-----SXPQVELFAPSLKTLKFGNVLPTLKSASKFACIHKVNI 265
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038890213.1 | 3.1e-27 | 41.71 | uncharacterized protein LOC120079853 [Benincasa hispida] | [more] |
XP_038890212.1 | 1.4e-24 | 47.37 | F-box/FBD/LRR-repeat protein At5g56420-like [Benincasa hispida] | [more] |
XP_022141791.1 | 2.2e-17 | 38.24 | LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica char... | [more] |
XP_022141790.1 | 4.2e-16 | 44.52 | F-box/FBD/LRR-repeat protein At1g16930-like [Momordica charantia] | [more] |
XP_038890214.1 | 5.5e-16 | 36.76 | F-box/LRR-repeat protein At3g26922-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CKA9 | 1.1e-17 | 38.24 | LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch... | [more] |
A0A6J1CJ42 | 2.0e-16 | 44.52 | F-box/FBD/LRR-repeat protein At1g16930-like OS=Momordica charantia OX=3673 GN=LO... | [more] |
A0A1S3CB41 | 1.0e-15 | 34.45 | F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO... | [more] |
A0A5A7TCF1 | 1.7e-15 | 34.48 | F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
A0A6J1CJ18 | 2.1e-13 | 39.29 | LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820 OS=Momordic... | [more] |
Match Name | E-value | Identity | Description | |