Lag0039605 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039605
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	alpha/beta-Hydrolases superfamily protein
Location	chr2: 47131455 .. 47132601 (-)
RNA-Seq Expression	Lag0039605
Synteny	Lag0039605

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCTGATTCCGATTTGGTCTTACTAAACAAGATGTGTAAACATCCACAACAGGTACGACCTATCTTCTTTATAAATGTATACACACTCTTTAGATCCATTTTTGTAAGTTTCATTTCAATTTTAAATACAAGTTGGAGTTTAAGATCACTTTTGAAAGTCGTGTTTTTATGTCAAGCACCTTTTCTGTAAGTATTTTTAGAAAACAAATAGATCGAATACTCACCCGAAATAAACCCTTAAACCTATTAGAGAAAACATTTAGTTTGTATATCTTCTAAAAGTTCTTATAGAAAAAATATATATATTTTCAACATCATTCTGAACTTATTAGATGTACACTTTAAAGTGCTTTCGATGAAATATTAGTACTTTTTCCTTAAAAGTTGTGTAGTCTCTAAAACCATCTCAAAAGCATTTTCAAAAAGTTATAGATTTTCATCCAAAGAATTTTTTCATTTTTCACTATTCTAAAATTCATGTTGAACTCATCTAATTAGTATAATGGAAGATTCAACAAACCACTATAATTAGTTAAATCTTAACTCACAAGGTTGATACCATGGAATGTTTTATGAAATTATTGACATGTAATGTTAATAAGAACACTTTCCTTTGAGTCTTTTTCAAGTGGTGGGATTGATTAAAATGTAATATAAATTATATAAAAGAATTGAAATCTCAACTAAACTAATATATTTCACACAAATCAAATCTTTAATTTTTGTACCCTAGATATCAACTAAGCAACATTTTGACATATTTTTATTTCAAAAAGTAAAATTGTTGTCATAACTAATATGCTAAAGAAGTAATATTTGTTCTTTTGATATTTTTCCCTTGCAACCAAAATCAGGAAAAAGCACAACAACAAGGTGCTCATGAAAGCCTTCATAGAGACATACTGTGTGCTTTTGGAAAATGGGAGTTTGATCCCATGGAGTTGACCAATCCATTTTCTGATACGAAGGGTTCTGTTCATATGTGGCAAGGCAGTGAAGACCGTATAGTTCCTATTGAATTGAATCGTTTTATAGCACAAAAACTTCCATGGATTCAGTACCATGAGGTTCCTAATGCTGGCCATTTACTAGTTCATGAAGCTCAAAACTTCGAATCCATACTAAGGAAACTTCTTGTCTGA

mRNA sequence

ATGCTTTCTGATTCCGATTTGGTCTTACTAAACAAGATGTGTAAACATCCACAACAGGAAAAAGCACAACAACAAGGTGCTCATGAAAGCCTTCATAGAGACATACTGTGTGCTTTTGGAAAATGGGAGTTTGATCCCATGGAGTTGACCAATCCATTTTCTGATACGAAGGGTTCTGTTCATATGTGGCAAGGCAGTGAAGACCGTATAGTTCCTATTGAATTGAATCGTTTTATAGCACAAAAACTTCCATGGATTCAGTACCATGAGGTTCCTAATGCTGGCCATTTACTAGTTCATGAAGCTCAAAACTTCGAATCCATACTAAGGAAACTTCTTGTCTGA

Coding sequence (CDS)

ATGCTTTCTGATTCCGATTTGGTCTTACTAAACAAGATGTGTAAACATCCACAACAGGAAAAAGCACAACAACAAGGTGCTCATGAAAGCCTTCATAGAGACATACTGTGTGCTTTTGGAAAATGGGAGTTTGATCCCATGGAGTTGACCAATCCATTTTCTGATACGAAGGGTTCTGTTCATATGTGGCAAGGCAGTGAAGACCGTATAGTTCCTATTGAATTGAATCGTTTTATAGCACAAAAACTTCCATGGATTCAGTACCATGAGGTTCCTAATGCTGGCCATTTACTAGTTCATGAAGCTCAAAACTTCGAATCCATACTAAGGAAACTTCTTGTCTGA

Protein sequence

MLSDSDLVLLNKMCKHPQQEKAQQQGAHESLHRDILCAFGKWEFDPMELTNPFSDTKGSVHMWQGSEDRIVPIELNRFIAQKLPWIQYHEVPNAGHLLVHEAQNFESILRKLLV

Homology

[Close]

BLAST of Lag0039605 vs. NCBI nr
Match: XP_008459720.1 (PREDICTED: uncharacterized protein LOC103498762 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 5.3e-48
Identity = 92/115 (80.00%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MLSDSDLVLLNKMCKHPQQEKAQQQGAHESLHRDILCAFGKWEFDPMELTNPFSDTKGS- 60
           M  DSDL +LN++ K P+Q+K  QQG HESLHRDILCAFGKWEFDPMELTNPF+D KGS 
Sbjct: 247 MFLDSDLTILNRILKRPEQKKVLQQGEHESLHRDILCAFGKWEFDPMELTNPFADDKGSV 306

Query: 61  VHMWQGSEDRIVPIELNRFIAQKLPWIQYHEVPNAGHLLVHEAQNFESILRKLLV 115
           VHMWQGS+DRIVPIELNRFIAQKLPWIQYHE+PN GHLLVHE QNFE+ILR LL+
Sbjct: 307 VHMWQGSQDRIVPIELNRFIAQKLPWIQYHELPNYGHLLVHEPQNFEAILRALLI 361

[Close]

BLAST of Lag0039605 vs. NCBI nr
Match: KAA0039271.1 (Alpha/beta-Hydrolases superfamily protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.3e-48
Identity = 92/115 (80.00%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MLSDSDLVLLNKMCKHPQQEKAQQQGAHESLHRDILCAFGKWEFDPMELTNPFSDTKGS- 60
           M  DSDL +LN++ K P+Q+K  QQG HESLHRDILCAFGKWEFDPMELTNPF+D KGS 
Sbjct: 541 MFLDSDLTILNRILKRPEQKKVLQQGEHESLHRDILCAFGKWEFDPMELTNPFADDKGSV 600

Query: 61  VHMWQGSEDRIVPIELNRFIAQKLPWIQYHEVPNAGHLLVHEAQNFESILRKLLV 115
           VHMWQGS+DRIVPIELNRFIAQKLPWIQYHE+PN GHLLVHE QNFE+ILR LL+
Sbjct: 601 VHMWQGSQDRIVPIELNRFIAQKLPWIQYHELPNYGHLLVHEPQNFEAILRALLI 655

[Close]

BLAST of Lag0039605 vs. NCBI nr
Match: TYK00458.1 (Alpha/beta-Hydrolases superfamily protein isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.3e-48
Identity = 92/115 (80.00%), Postives = 102/115 (88.70%), Query Frame = 0


Query: 1   MLSDSDLVLLNKMCKHPQQEKAQQQGAHESLHRDILCAFGKWEFDPMELTNPFSDTKGS- 60
           M  DSDL +LN++ K P+Q+K  QQG HESLHRDILCAFGKWEFDPMELTNPF+D KGS 
Sbjct: 216 MFLDSDLTILNRILKRPEQKKVLQQGEHESLHRDILCAFGKWEFDPMELTNPFADDKGSV 275

Query: 61  VHMWQGSEDRIVPIELNRFIAQKLPWIQYHEVPNAGHLLVHEAQNFESILRKLLV 115
           VHMWQGS+DRIVPIELNRFIAQKLPWIQYHE+PN GHLLVHE QNFE+ILR LL+
Sbjct: 276 VHMWQGSQDRIVPIELNRFIAQKLPWIQYHELPNYGHLLVHEPQNFEAILRALLI 330

[Close]

BLAST of Lag0039605 vs. NCBI nr
Match: XP_038890210.1 (uncharacterized protein LOC120079849 [Benincasa hispida])

HSP 1 Score: 200.7 bits (509), Expect = 6.9e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MLSDSDLVLLNKMCKHPQQEKAQQQGAHESLHRDILCAFGKWEFDPMELTNPFSDTKGSV 60
           M   SD  +LN++ K P+Q+K  QQG HESLHRD+LCA+GKWEFDPMELTNPF D KGSV
Sbjct: 238 MFLHSDSTILNRLLKRPEQKKVLQQGEHESLHRDLLCAYGKWEFDPMELTNPFPDNKGSV 297

Query: 61  HMWQGSEDRIVPIELNRFIAQKLPWIQYHEVPNAGHLLVHEAQNFESILRKLL 114
           HMWQGSEDRIVPIELNRFIAQKLPWIQYHE+PN GHLLVHEAQNFE+ILR LL
Sbjct: 298 HMWQGSEDRIVPIELNRFIAQKLPWIQYHELPNYGHLLVHEAQNFEAILRALL 350

[Close]

BLAST of Lag0039605 vs. NCBI nr
Match: XP_004141636.1 (uncharacterized protein LOC101207495 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-47
Identity = 88/114 (77.19%), Postives = 100/114 (87.72%), Query Frame = 0


Query: 1   MLSDSDLVLLNKMCKHPQQEKAQQQGAHESLHRDILCAFGKWEFDPMELTNPFSDTKGSV 60
           M  DSDL +L+K+ K P+Q+K  QQG HESLHRD+LCA+GKWEFDPMEL NPF D KGSV
Sbjct: 231 MFLDSDLTILSKILKRPEQKKVLQQGEHESLHRDLLCAYGKWEFDPMELRNPFPDEKGSV 290

Query: 61  HMWQGSEDRIVPIELNRFIAQKLPWIQYHEVPNAGHLLVHEAQNFESILRKLLV 115
           HMWQGS+DRIVP+ELNRFIAQKLPWIQYHE+PN GHLLVHE QNFE+ILR LL+
Sbjct: 291 HMWQGSKDRIVPVELNRFIAQKLPWIQYHELPNYGHLLVHEPQNFEAILRALLI 344

The following BLAST results are available for this feature:

BLAST of Lag0039605 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459720.1	5.3e-48	80.00	PREDICTED: uncharacterized protein LOC103498762 [Cucumis melo]	[more]
KAA0039271.1	5.3e-48	80.00	Alpha/beta-Hydrolases superfamily protein isoform 1 [Cucumis melo var. makuwa]	[more]
TYK00458.1	5.3e-48	80.00	Alpha/beta-Hydrolases superfamily protein isoform 1 [Cucumis melo var. makuwa]	[more]
XP_038890210.1	6.9e-48	79.65	uncharacterized protein LOC120079849 [Benincasa hispida]	[more]
XP_004141636.1	2.0e-47	77.19	uncharacterized protein LOC101207495 [Cucumis sativus]	[more]

BLAST of Lag0039605 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029058	Alpha/Beta hydrolase fold	GENE3D	3.40.50.1820	alpha/beta hydrolase	coord: 4..113 e-value: 1.5E-10 score: 43.2
IPR029058	Alpha/Beta hydrolase fold	SUPERFAMILY	53474	alpha/beta-Hydrolases	coord: 46..110
None	No IPR available	PANTHER	PTHR45763:SF21	ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN	coord: 1..114
None	No IPR available	PANTHER	PTHR45763	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED-RELATED	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039605.1	Lag0039605.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016787	hydrolase activity