Lag0039586 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039586
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEnzymatic polyprotein
Locationchr2: 46842564 .. 46842968 (-)
RNA-Seq ExpressionLag0039586
SyntenyLag0039586
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGCATGTCGAAGTTCAATTTCAAGAAGAACCCAGACATCCACGTATTCAAGAAATCACGAGCGGAAGATCCAGCGTCTCAGAATTCTGCTCCAATTCAAAAGATATGCCTGATCGACCTGTTCAAGTCCAGGTCCATGAGAATGCCGGTAGATTTTGATCAACAAATCTCTGACATCCAGTATGAAAAGTCTGAAGGACCTTTATCTCCTACTCAGACAGACATGGAACGAAAATCTGGAAATTTTTACAACCAGATCAACGTTCTATCCAGTCCCAACCTCAACTATGATAAGATGTATAACAGATACATTGATCACTATTGTGAAAAAATGAAAGAGAAAGGGAGGCCTAAAACAATGCCTCTTTCAAAGAAAGAATACATTACTCTTGTGGAATGA

mRNA sequence

ATGACGGGCATGTCGAAGTTCAATTTCAAGAAGAACCCAGACATCCACGTATTCAAGAAATCACGAGCGGAAGATCCAGCGTCTCAGAATTCTGCTCCAATTCAAAAGATATGCCTGATCGACCTGTTCAAGTCCAGGTCCATGAGAATGCCGGTAGATTTTGATCAACAAATCTCTGACATCCAGTATGAAAAGTCTGAAGGACCTTTATCTCCTACTCAGACAGACATGGAACGAAAATCTGGAAATTTTTACAACCAGATCAACGTTCTATCCAGTCCCAACCTCAACTATGATAAGATGTATAACAGATACATTGATCACTATTGTGAAAAAATGAAAGAGAAAGGGAGGCCTAAAACAATGCCTCTTTCAAAGAAAGAATACATTACTCTTGTGGAATGA

Coding sequence (CDS)

ATGACGGGCATGTCGAAGTTCAATTTCAAGAAGAACCCAGACATCCACGTATTCAAGAAATCACGAGCGGAAGATCCAGCGTCTCAGAATTCTGCTCCAATTCAAAAGATATGCCTGATCGACCTGTTCAAGTCCAGGTCCATGAGAATGCCGGTAGATTTTGATCAACAAATCTCTGACATCCAGTATGAAAAGTCTGAAGGACCTTTATCTCCTACTCAGACAGACATGGAACGAAAATCTGGAAATTTTTACAACCAGATCAACGTTCTATCCAGTCCCAACCTCAACTATGATAAGATGTATAACAGATACATTGATCACTATTGTGAAAAAATGAAAGAGAAAGGGAGGCCTAAAACAATGCCTCTTTCAAAGAAAGAATACATTACTCTTGTGGAATGA

Protein sequence

MTGMSKFNFKKNPDIHVFKKSRAEDPASQNSAPIQKICLIDLFKSRSMRMPVDFDQQISDIQYEKSEGPLSPTQTDMERKSGNFYNQINVLSSPNLNYDKMYNRYIDHYCEKMKEKGRPKTMPLSKKEYITLVE
Homology
BLAST of Lag0039586 vs. NCBI nr
Match: KAA0050195.1 (polyprotein [Cucumis melo var. makuwa] >TYJ98214.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 5.3e-15
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 44  KSRSMRMPVDFDQQISDIQYEKSEGPLSPTQTDMERKSGNFYNQINVLS-SPNLNYDKMY 103
           KS SMRM VDF+Q I D QYEKSEG LSPTQT MER+SGN YNQIN ++      YD+ Y
Sbjct: 80  KSNSMRMLVDFEQSIPDEQYEKSEGSLSPTQTAMERRSGNIYNQINTITLEGKALYDQYY 139

Query: 104 NRYIDHYCEKMKEKGRPKTMPLSKKEYITLV 134
            +YID Y  +     RPK   LSK E+I  V
Sbjct: 140 EKYIDQYINQKNWDNRPKF--LSKTEFIARV 168

BLAST of Lag0039586 vs. NCBI nr
Match: KAA0050634.1 (hypothetical protein E6C27_scaffold673G001010 [Cucumis melo var. makuwa] >TYK07799.1 hypothetical protein E5676_scaffold1737G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.4e-14
Identity = 48/93 (51.61%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 42  LFKSRSMRMPVDFDQQISDIQYEKSEGPLSPTQTDMERKSGNFYNQINVLS-SPNLNYDK 101
           +  S SMRM VDF+Q I D+QYEKS+G LSPTQTDMER+SG+ YNQIN ++      YD+
Sbjct: 90  ILMSTSMRMAVDFEQSIPDVQYEKSKGSLSPTQTDMERRSGDIYNQINTITLEDKALYDQ 149

Query: 102 MYNRYIDHYCEKMKEKGRPKTMPLSKKEYITLV 134
            Y +Y+D Y  +      PK   LSK E+I  V
Sbjct: 150 YYEKYVDQYTNQKDWDNIPKF--LSKPEFIAKV 180

BLAST of Lag0039586 vs. NCBI nr
Match: KAA0056776.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 0

Query: 13  PDIHVFKKSRAEDPASQNSAPIQKICLIDLFKSRSMRMPVDFDQQISDIQYEKSEGPLSP 72
           P I     SR    + ++ A  ++     L +S S+R  VDF   I DI YEK +G LSP
Sbjct: 304 PKISEIMSSRPSTSSIKSEASYRE----TLRRSESIRASVDFSHTIPDIHYEKEDGSLSP 363

Query: 73  TQTDMERKSGNFYNQINVLSSPNLNYDKMYNRYIDHYCEKMKEKGRP-KTMP 124
           TQ+DMER+S   YNQINV+S+    + + Y+ YID + +   E  +P  TMP
Sbjct: 364 TQSDMERRSEPVYNQINVISNDKERFREHYSVYIDQWIKAPAETRKPFLTMP 411

BLAST of Lag0039586 vs. NCBI nr
Match: KAA0059217.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-09
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 42  LFKSRSMRMPVDFDQQISDIQYEKSEGPLSPTQTDMERKSGNFYNQINVLSSPNLNYDKM 101
           L +S S+R  VDF   I D+ YEK +G LSPTQ+DMER+S   YNQINV+S+    + + 
Sbjct: 329 LRRSESIRASVDFSHTIPDVHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREH 388

Query: 102 YNRYIDHYCEKMKEKGRP-KTMP 124
           Y+ YID + +   E  +P  TMP
Sbjct: 389 YSVYIDQWIKAPAETRKPFLTMP 411

BLAST of Lag0039586 vs. NCBI nr
Match: TYJ97599.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-09
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 42  LFKSRSMRMPVDFDQQISDIQYEKSEGPLSPTQTDMERKSGNFYNQINVLSSPNLNYDKM 101
           L +S S+R  VDF   I D+ YEK +G LSPTQ+DMER+S   YNQINV+S+    + + 
Sbjct: 329 LRRSESIRASVDFSHTIPDVHYEKEDGSLSPTQSDMERRSEPVYNQINVISNDKERFREH 388

Query: 102 YNRYIDHYCEKMKEKGRP-KTMP 124
           Y+ YID + +   E  +P  TMP
Sbjct: 389 YSVYIDQWIKAPAETRKPFLTMP 411

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050195.15.3e-1557.14polyprotein [Cucumis melo var. makuwa] >TYJ98214.1 polyprotein [Cucumis melo var... [more]
KAA0050634.13.4e-1451.61hypothetical protein E6C27_scaffold673G001010 [Cucumis melo var. makuwa] >TYK077... [more]
KAA0056776.12.0e-0940.18Enzymatic polyprotein [Cucumis melo var. makuwa][more]
KAA0059217.12.6e-0946.99Enzymatic polyprotein [Cucumis melo var. makuwa][more]
TYJ97599.12.6e-0946.99Enzymatic polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039586.1Lag0039586.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity