Lag0039584 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039584
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 46827115 .. 46827435 (-)
RNA-Seq ExpressionLag0039584
SyntenyLag0039584
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGAAACAGAGGCAGAGCCTCATCCTCAAGGGGCAGTCGCCCATCTTCTTCTTCTCCAACACCTCCTCCTATGAGTGCTGATCAATACGCCATGGATTTAGGGTTTACTCCGGTAACCCGATCCAGGTCAAGGCAAGGTGGTATTCGCCCGATGCCTCCAATGGAGTCTTCTACTCCACCTCCACTGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAGTTGTTCAATTGAGACCTCTTGTCTCTCCTTCCTTCCTCAATAACAGGATCATCGATCCCATCGTCATCAACTTATTCTCAGGCAGTTGTTCCTGA

mRNA sequence

ATGAGCGGAAACAGAGGCAGAGCCTCATCCTCAAGGGGCAGTCGCCCATCTTCTTCTTCTCCAACACCTCCTCCTATGAGTGCTGATCAATACGCCATGGATTTAGGGTTTACTCCGGTAACCCGATCCAGGTCAAGGCAAGGTGGTATTCGCCCGATGCCTCCAATGGAGTCTTCTACTCCACCTCCACTGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAGTTGTTCAATTGAGACCTCTTGTCTCTCCTTCCTTCCTCAATAACAGGATCATCGATCCCATCGTCATCAACTTATTCTCAGGCAGTTGTTCCTGA

Coding sequence (CDS)

ATGAGCGGAAACAGAGGCAGAGCCTCATCCTCAAGGGGCAGTCGCCCATCTTCTTCTTCTCCAACACCTCCTCCTATGAGTGCTGATCAATACGCCATGGATTTAGGGTTTACTCCGGTAACCCGATCCAGGTCAAGGCAAGGTGGTATTCGCCCGATGCCTCCAATGGAGTCTTCTACTCCACCTCCACTGCCTTCGGCCAACCTTGTCCGTCCTTCTGGCGGAGTTGTTCAATTGAGACCTCTTGTCTCTCCTTCCTTCCTCAATAACAGGATCATCGATCCCATCGTCATCAACTTATTCTCAGGCAGTTGTTCCTGA

Protein sequence

MSGNRGRASSSRGSRPSSSSPTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPPLPSANLVRPSGGVVQLRPLVSPSFLNNRIIDPIVINLFSGSCS
Homology
BLAST of Lag0039584 vs. NCBI nr
Match: KAA0049709.1 (hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 7.7e-17
Identity = 59/83 (71.08%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 5  RGRASSSRGSRPSSSS-PTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPP 64
          R  ++SS+G+RPSSSS  TP PMSADQYAMDLGFT VTRSRSR   IR   P ESSTPP 
Sbjct: 11 RTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESSTPPK 70

Query: 65 LPSANLVRPSGGVVQLRPLVSPS 87
           PS NL+RPSGGVVQ+R  VSPS
Sbjct: 71 -PSTNLIRPSGGVVQMRSPVSPS 92

BLAST of Lag0039584 vs. NCBI nr
Match: TYK14869.1 (hypothetical protein E5676_scaffold1432G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.9e-16
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 0

Query: 5  RGRASSSRGSRPSSSS-PTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPP 64
          R  ++S++G+RPSSSS  TP P SADQ AMDLGFT VTRSRSR  GIR   PME ST PP
Sbjct: 11 RTNSTSTKGNRPSSSSNSTPSPTSADQNAMDLGFTTVTRSRSRSFGIRIGSPMELST-PP 70

Query: 65 LPSANLVRPSGGVVQLRPLVSPS 87
           PS NL+RPSGGVVQ+RPL SPS
Sbjct: 71 RPSTNLIRPSGGVVQMRPLSSPS 92

BLAST of Lag0039584 vs. NCBI nr
Match: KAA0056259.1 (hypothetical protein E6C27_scaffold226G00270 [Cucumis melo var. makuwa] >TYK05242.1 hypothetical protein E5676_scaffold108G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 7.2e-15
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 5  RGRASSSRGSRPSSSSP-TPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPP 64
          R  ++SS+G+RPSSSS   P PMSADQYAMDL FT +TRSRSR  GIR   P ESST PP
Sbjct: 11 RTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIGSPTESST-PP 70

Query: 65 LPSANLVRPSGGVVQLRPLVSPS 87
           PSANL+R S GVVQ+RP  SPS
Sbjct: 71 RPSANLIRLSDGVVQMRPHASPS 92

BLAST of Lag0039584 vs. NCBI nr
Match: TYK11076.1 (hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 9.4e-15
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 5  RGRASSSRGSRPSSSS-PTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPP 64
          R  ++SS+G+RPSSSS   P PMSADQY MDLGFT V RSRSR   IR   P ESST PP
Sbjct: 11 RTNSTSSKGNRPSSSSNSAPSPMSADQYEMDLGFTTVIRSRSRSSSIRTESPTESST-PP 70

Query: 65 LPSANLVRPSGGVVQLRPLVSPS 87
           P ANL+RPSG VVQ+RP  SPS
Sbjct: 71 RPLANLIRPSGRVVQMRPPASPS 92

BLAST of Lag0039584 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-14
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 5  RGRASSSRGSRPSSSS-PTPPPMSADQYAMDLGFTPVTRSRSRQGGIRPMPPMESSTPPP 64
          R  ++SSRG+RPSSSS   P PMSADQYAMDLGFT VTRSR+R   I+   P +SST PP
Sbjct: 1  RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSST-PP 60

Query: 65 LPSANLVRPSGGVVQLRPLVSPSFLNNR 92
            SANL+RPS  VVQ+RPL SP  L+NR
Sbjct: 61 RTSANLIRPSSEVVQMRPLASP--LSNR 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0049709.17.7e-1771.08hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa][more]
TYK14869.12.9e-1669.88hypothetical protein E5676_scaffold1432G00040 [Cucumis melo var. makuwa][more]
KAA0056259.17.2e-1567.47hypothetical protein E6C27_scaffold226G00270 [Cucumis melo var. makuwa] >TYK0524... [more]
TYK11076.19.4e-1566.27hypothetical protein E5676_scaffold73G00620 [Cucumis melo var. makuwa][more]
KAE8646253.11.2e-1464.77hypothetical protein Csa_023844, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039584.1Lag0039584.1mRNA