Lag0039581 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039581
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 46809129 .. 46809443 (-)
RNA-Seq ExpressionLag0039581
SyntenyLag0039581
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGATCAGCGTGGCAAAGCCTCCTCTTCTTCAAAGGGCAAAAGCCCAGCTTCTTCATCAAAATCCCCTGCTCTTATGAGCACCGATCAATATGCGATAGATTTGGGTTTCACTCCGATGAATCGCCCAAGAACTAGAAGCGCATCGATTCAAATAAGAGAATCAATGGAGTCATTAACTCCACCTCCGAGGCCATCAACCTCTCTCATTCAGCCTACTGTCGTCACTCAAATGAGACCTTTCGTCTTGTTGGGTTTAATGTCCTATAAACTCGTATTTTGTAAATCATTAAACATATTCTATTTCCAATAA

mRNA sequence

ATGAGTGATCAGCGTGGCAAAGCCTCCTCTTCTTCAAAGGGCAAAAGCCCAGCTTCTTCATCAAAATCCCCTGCTCTTATGAGCACCGATCAATATGCGATAGATTTGGGTTTCACTCCGATGAATCGCCCAAGAACTAGAAGCGCATCGATTCAAATAAGAGAATCAATGGAGTCATTAACTCCACCTCCGAGGCCATCAACCTCTCTCATTCAGCCTACTGTCGTCACTCAAATGAGACCTTTCGTCTTGTTGGGTTTAATGTCCTATAAACTCGTATTTTGTAAATCATTAAACATATTCTATTTCCAATAA

Coding sequence (CDS)

ATGAGTGATCAGCGTGGCAAAGCCTCCTCTTCTTCAAAGGGCAAAAGCCCAGCTTCTTCATCAAAATCCCCTGCTCTTATGAGCACCGATCAATATGCGATAGATTTGGGTTTCACTCCGATGAATCGCCCAAGAACTAGAAGCGCATCGATTCAAATAAGAGAATCAATGGAGTCATTAACTCCACCTCCGAGGCCATCAACCTCTCTCATTCAGCCTACTGTCGTCACTCAAATGAGACCTTTCGTCTTGTTGGGTTTAATGTCCTATAAACTCGTATTTTGTAAATCATTAAACATATTCTATTTCCAATAA

Protein sequence

MSDQRGKASSSSKGKSPASSSKSPALMSTDQYAIDLGFTPMNRPRTRSASIQIRESMESLTPPPRPSTSLIQPTVVTQMRPFVLLGLMSYKLVFCKSLNIFYFQ
Homology
BLAST of Lag0039581 vs. NCBI nr
Match: KAA0049709.1 (hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 0

Query: 5  RGKA-SSSSKGKSPASSSKS-PALMSTDQYAIDLGFTPMNRPRTRSASIQIRESMESLTP 64
          RG+  S+SSKG  P+SSS S P+ MS DQYA+DLGFT + R R+RS+SI+I    ES T 
Sbjct: 9  RGRTNSTSSKGNRPSSSSNSTPSPMSADQYAMDLGFTTVTRSRSRSSSIRIGSPTESST- 68

Query: 65 PPRPSTSLIQPT-VVTQMR 81
          PP+PST+LI+P+  V QMR
Sbjct: 69 PPKPSTNLIRPSGGVVQMR 86

BLAST of Lag0039581 vs. NCBI nr
Match: KAA0038837.1 (hypothetical protein E6C27_scaffold2487G00030 [Cucumis melo var. makuwa] >TYK14263.1 hypothetical protein E5676_scaffold1121G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 7.0e-07
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 1  MSDQRGKA-----SSSSKGKSPASSSK-SPALMSTDQYAIDLGFTPMNRPRTRSASIQIR 60
          MS ++G A     S+SSKG  P+SSS  +P+ MS  QYA+DLGFT + R R+RS+SI+I 
Sbjct: 1  MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSAYQYAMDLGFTTVTRSRSRSSSIRIG 60

Query: 61 ESMESLTPPPRPSTSLIQPT-VVTQMRP 82
             ES T PPRPS +LI+P+  V QMRP
Sbjct: 61 SPTESST-PPRPSANLIRPSRGVVQMRP 87

BLAST of Lag0039581 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 0

Query: 9  SSSSKGKSPASSSKS-PALMSTDQYAIDLGFTPMNRPRTRSASIQIRESMESLTPPPRPS 68
          S+SS+G  P+SSS S P+ MS DQYA+DLGFT + R R RS+ IQI    +S T PPR S
Sbjct: 4  STSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSST-PPRTS 63

Query: 69 TSLIQP-TVVTQMRP 82
           +LI+P + V QMRP
Sbjct: 64 ANLIRPSSEVVQMRP 77

BLAST of Lag0039581 vs. NCBI nr
Match: TYJ98361.1 (hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 1  MSDQRGKA-----SSSSKGKSPASSSKS-PALMSTDQYAIDLGFTPMNRPRTRSASIQIR 60
          MS ++G A     S+SSKG  P+SSS S P+ MS DQYA+DLG+T + + R++S+ I IR
Sbjct: 1  MSSKKGSARGRTNSTSSKGNCPSSSSNSAPSPMSVDQYAMDLGYTTVIQSRSKSSGIWIR 60

Query: 61 ESMESLTPPPRPSTSLIQP-TVVTQMR 81
            MES T PPRPS +LI P   V QMR
Sbjct: 61 SPMESST-PPRPSVNLIHPFGEVIQMR 86

BLAST of Lag0039581 vs. NCBI nr
Match: TYK14869.1 (hypothetical protein E5676_scaffold1432G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-06
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 0

Query: 1  MSDQRGKA-----SSSSKGKSPASSSKS-PALMSTDQYAIDLGFTPMNRPRTRSASIQIR 60
          MS ++G A     S+S+KG  P+SSS S P+  S DQ A+DLGFT + R R+RS  I+I 
Sbjct: 1  MSSEKGSAKGRTNSTSTKGNRPSSSSNSTPSPTSADQNAMDLGFTTVTRSRSRSFGIRIG 60

Query: 61 ESMESLTPPPRPSTSLIQPT-VVTQMRP 82
            ME L+ PPRPST+LI+P+  V QMRP
Sbjct: 61 SPME-LSTPPRPSTNLIRPSGGVVQMRP 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0049709.12.4e-0758.23hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa][more]
KAA0038837.17.0e-0753.41hypothetical protein E6C27_scaffold2487G00030 [Cucumis melo var. makuwa] >TYK142... [more]
KAE8646253.13.5e-0656.00hypothetical protein Csa_023844, partial [Cucumis sativus][more]
TYJ98361.13.5e-0652.87hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa][more]
TYK14869.13.5e-0652.27hypothetical protein E5676_scaffold1432G00040 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039581.1Lag0039581.1mRNA