Lag0039559 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039559
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr2: 46295485 .. 46295829 (-)
RNA-Seq ExpressionLag0039559
SyntenyLag0039559
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGAATTTTCCTGAAGAAGTATCACCTCATTACACTGCTAATAGAAGCCACCAGAAGAATTGCCAACATTGCACAATCACTTGAAGAGTTGTTCCACGAGTTCGTGAGCCGCTTCAATCTATACTACATGGAACATCACACCCCATTCTCAGAGGACTCCCTGATAGAAAGCTTCTGCGAAGGGCTAAAACCCGATCATAGAAGAATGCTTAACTCAGCTAGGGATGGTGATGTGCTTGCTACAACACTTGGTGTGGCGTGGGAGATTATTGAAAAACTGGCGGAAGTCACTAGATTCCGTGCCAACTCCCCTGATGAGCTAGAGAGCCAAATCTCGTAG

mRNA sequence

ATGAGAAGAATTTTCCTGAAGAAGTATCACCTCATTACACTGCTAATAGAAGCCACCAGAAGAATTGCCAACATTGCACAATCACTTGAAGAGTTGTTCCACGAGTTCGTGAGCCGCTTCAATCTATACTACATGGAACATCACACCCCATTCTCAGAGGACTCCCTGATAGAAAGCTTCTGCGAAGGGCTAAAACCCGATCATAGAAGAATGCTTAACTCAGCTAGGGATGGTGATGTGCTTGCTACAACACTTGGTGTGGCGTGGGAGATTATTGAAAAACTGGCGGAAGTCACTAGATTCCGTGCCAACTCCCCTGATGAGCTAGAGAGCCAAATCTCGTAG

Coding sequence (CDS)

ATGAGAAGAATTTTCCTGAAGAAGTATCACCTCATTACACTGCTAATAGAAGCCACCAGAAGAATTGCCAACATTGCACAATCACTTGAAGAGTTGTTCCACGAGTTCGTGAGCCGCTTCAATCTATACTACATGGAACATCACACCCCATTCTCAGAGGACTCCCTGATAGAAAGCTTCTGCGAAGGGCTAAAACCCGATCATAGAAGAATGCTTAACTCAGCTAGGGATGGTGATGTGCTTGCTACAACACTTGGTGTGGCGTGGGAGATTATTGAAAAACTGGCGGAAGTCACTAGATTCCGTGCCAACTCCCCTGATGAGCTAGAGAGCCAAATCTCGTAG

Protein sequence

MRRIFLKKYHLITLLIEATRRIANIAQSLEELFHEFVSRFNLYYMEHHTPFSEDSLIESFCEGLKPDHRRMLNSARDGDVLATTLGVAWEIIEKLAEVTRFRANSPDELESQIS
Homology
BLAST of Lag0039559 vs. NCBI nr
Match: XP_010667080.1 (PREDICTED: uncharacterized protein LOC104884176 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-04
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 0

Query: 1   MRRIFLKKYHLITLLIEATRRIANIAQSLEELFHEFVSRF-NLYYMEHHTPFSEDSLIES 60
           M++ FL+K+   + L E  R I+NI Q  +E+ ++++ RF  L     +  F+E  L+  
Sbjct: 157 MKQAFLEKFFPSSKLNELKRAISNIEQGYDEILYDYLERFKRLIACCPYHGFAEKDLVLY 216

Query: 61  FCEGLKPDHRRMLNSARDGDVLATTLGVAWEIIEKLAEVTRF-----------RANSPDE 115
              GL PD RRM+N+A  G++   T   A E+I + AE +R             A+S   
Sbjct: 217 LVGGLLPDERRMVNAACGGNIDNKTPQQAMELISEFAESSRTYSKRNTTRGVKAASSKSS 276

BLAST of Lag0039559 vs. NCBI nr
Match: XP_010684910.1 (PREDICTED: uncharacterized protein LOC104899419 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 0

Query: 1   MRRIFLKKYHLITLLIEATRRIANIAQSLEELFHEFVSRF-NLYYMEHHTPFSEDSLIES 60
           M++ FL+K+   + L E  R I+NI Q  +E+ ++++ RF  L     +  F+E  L+  
Sbjct: 157 MKQAFLEKFFPSSKLNELKRAISNIEQGYDEILYDYLERFKRLVACCPYHGFAEKDLVLY 216

Query: 61  FCEGLKPDHRRMLNSARDGDVLATTLGVAWEIIEKLAEVTRF-----------RANSPDE 115
              GL PD RRM+N+A  G++   T   A E+I + AE +              A+S   
Sbjct: 217 LVGGLLPDERRMVNAASGGNIDNKTPQQAMELISEFAESSHTYSKRNTTRGVKAASSKSS 276

BLAST of Lag0039559 vs. NCBI nr
Match: XP_010678235.1 (PREDICTED: uncharacterized protein LOC104893798 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-04
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 0

Query: 1   MRRIFLKKYHLITLLIEATRRIANIAQSLEELFHEFVSRF-NLYYMEHHTPFSEDSLIES 60
           M++ FL+K+   + L E  R I+NI Q  +E+ ++++ RF  L     +  F+E  L+  
Sbjct: 157 MKQAFLEKFFPSSKLNELKRAISNIEQGYDEILYDYLERFKRLVACCPYHGFAEKDLVLY 216

Query: 61  FCEGLKPDHRRMLNSARDGDVLATTLGVAWEIIEKLAEVTRF-----------RANSPDE 115
              GL PD RRM+N+A  G++   T   A E+I +  E +R             A+S   
Sbjct: 217 LVGGLLPDERRMVNAACGGNIDNKTPQQAMELISEFVESSRTYSKRNTTRGVKAASSTSS 276

BLAST of Lag0039559 vs. NCBI nr
Match: XP_013607986.1 (PREDICTED: uncharacterized protein LOC106314701 [Brassica oleracea var. oleracea])

HSP 1 Score: 54.3 bits (129), Expect = 8.0e-04
Identity = 33/112 (29.46%), Postives = 56/112 (50.00%), Query Frame = 0

Query: 1   MRRIFLKKYHLITLLIEATRRIANIAQSLEELFHEFVSRFNLYYME-HHTPFSEDSLIES 60
           +R  FL  +H  +       +I+N  Q  +E FHE   R+  Y  E  H  F +D ++E 
Sbjct: 55  VRSAFLSHFHTKSKTAALRHKISNFKQKSDEPFHEAWERYKEYQRECPHHGFDDDYILEV 114

Query: 61  FCEGLKPDHRRMLNSARDGDVLATTLGVAWEIIEKLAEVTRFRANSPDELES 112
           F +G+  + R  L+S+ +GD +  T   A+E+IE +A  +  +    D  +S
Sbjct: 115 FYDGVSYEFRNTLDSSSNGDFMTQTTPGAFELIETMASSSLNKNKEHDRSKS 166

BLAST of Lag0039559 vs. NCBI nr
Match: WP_192824169.1 (retrotransposon gag domain-containing protein, partial [Escherichia coli])

HSP 1 Score: 54.3 bits (129), Expect = 8.0e-04
Identity = 35/101 (34.65%), Postives = 57/101 (56.44%), Query Frame = 0

Query: 1   MRRIFLKKYHLITLLIEATRRIANIAQSLEELFHEFVSRF-NLYYMEHHTPFSEDSLIES 60
           M++ FL++Y+  ++     ++I+N+ Q  +E F+EF  RF  L     +  +SE  LI  
Sbjct: 35  MKKSFLERYYPASISSSLKKQISNVEQKDDESFYEFWERFKKLCASCPYHGYSEQDLILY 94

Query: 61  FCEGLKPDHRRMLNSARDGDVLATTLGVAWEIIEKLAEVTR 101
           F +GL  D RRM+N+A  G ++  T   A  +I +LAE  R
Sbjct: 95  FYDGLCDDDRRMINAACGGGIVNKTPSQARNLISELAENCR 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_010667080.11.2e-0432.54PREDICTED: uncharacterized protein LOC104884176 [Beta vulgaris subsp. vulgaris][more]
XP_010684910.12.7e-0431.75PREDICTED: uncharacterized protein LOC104899419 [Beta vulgaris subsp. vulgaris][more]
XP_010678235.13.6e-0431.75PREDICTED: uncharacterized protein LOC104893798 [Beta vulgaris subsp. vulgaris][more]
XP_013607986.18.0e-0429.46PREDICTED: uncharacterized protein LOC106314701 [Brassica oleracea var. oleracea... [more]
WP_192824169.18.0e-0434.65retrotransposon gag domain-containing protein, partial [Escherichia coli][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039559.1Lag0039559.1mRNA