Lag0039556 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039556
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr2: 46241039 .. 46244132 (-)
RNA-Seq ExpressionLag0039556
SyntenyLag0039556
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTAAATTCAACCCAGGGATAGTACGTACTAAGTTGGATACAGAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAACAGAACAGTTTGTAGGATGTTCATTAGAAGATCCTCACTCTCACCTCAAATCATTTATCGACATTTGCAACAAGCTCATCATTCCAAGAGTTACCCTAGAACAACTTCAAGTCATATTATTTCCTTGCTCGCTACGAGATGCTGCTAAAGTATGGTTAAACCAAAAACTAGCAAATTCCATCGGCACATGGATCGACCTGGCAGAAAAAGTTTTGGAGAAATATTTTCCACCAACAACTAATTCCAGATTGCACAAAGAAATTATGACTTTATTCACAACATGAGGACAAGTCACTGAGCGATGCATGGGAACGATTCAAAAATCTTTTACAAGGATGCCCTCACCATGGACTACCTCATTGCATCCAACTAGAAAAGAAGCATTCTTGTTTCTGAAAATACAGGGTATAAAGAGTAGCATTTCCAAAAATTTGGTCTCCTTCAGAGTTCCACATCTCCCTCTCTTAACCGTAGCAAGTAGTTACGAGATGCTCTCCCTTTTCTGGCGTAAGGCAACACAGAATTCCTTACTCTCTATCACTAATCGTTAAATTGATCTTTGCTCAGAATTTTCTCCAGATTCAAAATCATCCAAAGAATTCCCTAATCCCAAGAAAAGGACCCCACTTCCTTTGGCCTAAAAAATTACCTTTGAGAATACTAGTGTCACTTGGTGGTGGTGTCGTTGTTGATACAATAGAGGATTTGCAAAGAAGAAAGAGTTTGTGAAGATTCATCCAAGGTGTTGGTGATAATTTCTAGAGCCATCAACGTAGGTTTGTAAATTCTCCTTCTCTATAAAATATAATTAGAATAGGATTTTAATTTATTTTACAACATGCTTAGACCTTAGATCTACAGTAGAATAAATTGTTTAAACCTTAATGTGATTTTTACCAGCGTACTGGTATTTTGGTTCAAATTAAAACATGAGCAGTTGGTCTAATTATTTTTCTCTTCGTAAGGGATTCAACCTACATTGTCAACAACAGAGGCAAAGTTTATGGTTGTTTCTGAAGTAGTTAAAGAGTCATTGTAGTTGCAAGGTTTGACTAGAGACCTTGGCTTTGAACTAAAAATGGTGGAAGTCTTGTGCGATAACCAAAGTGCCATTTATCTCACGAAAAGTGCTCAGTTTCATGAGAGAACAAAACATTTAGATGTAAAGCTACATTTTGTAAGGAAAATTGTGGAGAAATGAGCAGTGAAGATTGTGACGGTGCACATAACAGAGAACTTACCTAATATGATTACCAAACCTGTGTCTGGAGCTAAGTTAAACTACTGTAATGAAGGGATCAAGATGGTCTCCTTCAGGTTACCGTACTATCTGGAAATACAGGGTATGAAGAGAAGCATTCTTGTTTTGTCTTGTTTTATCCTTTATATTTTCCAGGGTGGTGAACAAAAAATTTAATGAACTTGAAGCATTTGAGGAGCCAAGAAAATCTTATAGAAGACATTTCAAATGGTTAGGGTCCATTGAATCTTTTCCATATATAATCAAGTACAAATATTGTATGAAAATGTCATAGTTGATGCACTCTCAAGGAAGTGTACATTACTCTTCACTTTGAATGCTACACTTTTAGACTTTTAGCACATCAAGTCTTTTTATGTTCAAAATCCTTATTTGCTTCTATCTTTTATGTGTACTAATAAAGATACTTGTGATAATTTTTTGATCCTTGAATGATATCTATTTAAAACGAAGAAATTTGTGAATACCTACAAGACTCAATTTGAGAGAGTTAGACACATTTCATTGCATGTTCTAAAACTAATGATGTCAAACACATTGCAAAACTATTCTTTAAAGAAGTAGTTAGGTTGCATGGAATTACTCAAACTATTACTAGTGATAGAGATATTAAGTTCCCACCTTTGGAAAGTCTTGGGAGGTATATGTTAGGTACTAAACTCATATATTCTAATATCTGTCATTGATAAATGCCAAATATTACACATATTTAACCTTAAGGAGTAATTTATTCCTTGTCAATTCGAGTATATTTTAATCATAATTGTGATTTCCCAAGCTCAAATGTGCATTAGTGTGCAAGTTAGGTGTTAGAAAGTCAAAGTGTGTAATTCAAGCATATTTGAGGGTAAAAGAGTCAATTTGGCTAAGAAATAATTGATTTTTTGTGTTTTGAAGGAAATCACTTTGGAGCTTTAGATTGCGACCGCAATCTTCTCGTAATCTTCCAAAGGCAAAAAATAATTGTGGTTGCAATTTCTCCAAACACTAATTTTCCTGGTTTTCGCGAGTCACCAACTGACGAGCTTTTCACGCACCTAGTCTATTGATTTGACTCCTATTCTTTCTAGTCTAATTGGGGACATGATTTTCAATAACAACCCAATCAATTTCAAGCTATAAAAAGGGACTTTAAACATCAACTTTGAAGTCGAGGACAGAAATTGGGTGATGTCGTGAACCCTAATTCGCCCCTTAGAGTCATGATTCATCATCTCCACTCAATAACTCGTTTTTTTTTTCACCGTGATTAGCCCTAAACCCAGGAGTTTAGCTTGTACACACTTAATTTACCCTGAATTATTCGAAATTAAGTGTAGAGCGATCCTTGAGTGAGAAAACCCTAGTTTTAGCTTTAAGTTTCTACACTTCTTATATTTTGAAGATTTGTATTCTTTTATTCAATTGTAAAATTATGAATTCATTTTCAATAAAGCTTTCCATTGTCATTTATTTCATTATGATGTGTAGCTAAATTTCTTTAAGGAATTTGATTTGGTAAATGCTCTTAAGAATTAGTTCGCTTGGCAGTTGTCTCACTTGTGCCCATTTCTCTTTATGTGTGTAACGCCCCAGGCCCAGGATTCGGAATCCGGATTCGGCCATTAACGATCCCGGCATTCCCCTGCGACCTGGCCACGCCACCATACTTTTCTGAAACTGCTTCAAAGAATGAAGACTGTCCCCACAAACCAACACTGGGTCCTTTTAACATGCTTTGTCCTCACTCACATGCTTTCTAG

mRNA sequence

ATGCGTAAATTCAACCCAGGGATAGTACGTACTAAGTTGGATACAGAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAACAGAACAGTTTGTAGGATGTTCATTAGAAGATCCTCACTCTCACCTCAAATCATTTATCGACATTTGCAACAAGCTCATCATTCCAAGAGTTACCCTAGAACAACTTCAAGTCATATTATTTCCTTGCTCGCTACGAGATGCTGCTAAAGGTATAAAGAGTAGCATTTCCAAAAATTTGGTCTCCTTCAGAGTTCCACATCTCCCTCTCTTAACCGTAGCAAGTAGTTACGAGATGCTCTCCCTTTTCTGGCAGAACTTACCTAATATGATTACCAAACCTGTGTCTGGAGCTAAGTTAAACTACTGTAATGAAGGGATCAAGATGGTCTCCTTCAGGTTACCGTACTATCTGGAAATACAGGGCCCAGGATTCGGAATCCGGATTCGGCCATTAACGATCCCGGCATTCCCCTGCGACCTGGCCACGCCACCATACTTTTCTGAAACTGCTTCAAAGAATGAAGACTGTCCCCACAAACCAACACTGGGTCCTTTTAACATGCTTTGTCCTCACTCACATGCTTTCTAG

Coding sequence (CDS)

ATGCGTAAATTCAACCCAGGGATAGTACGTACTAAGTTGGATACAGAAAGGTTTGAACTTAAGCCTGTTATGTTTCAAATGCTTACTGCAACAGAACAGTTTGTAGGATGTTCATTAGAAGATCCTCACTCTCACCTCAAATCATTTATCGACATTTGCAACAAGCTCATCATTCCAAGAGTTACCCTAGAACAACTTCAAGTCATATTATTTCCTTGCTCGCTACGAGATGCTGCTAAAGGTATAAAGAGTAGCATTTCCAAAAATTTGGTCTCCTTCAGAGTTCCACATCTCCCTCTCTTAACCGTAGCAAGTAGTTACGAGATGCTCTCCCTTTTCTGGCAGAACTTACCTAATATGATTACCAAACCTGTGTCTGGAGCTAAGTTAAACTACTGTAATGAAGGGATCAAGATGGTCTCCTTCAGGTTACCGTACTATCTGGAAATACAGGGCCCAGGATTCGGAATCCGGATTCGGCCATTAACGATCCCGGCATTCCCCTGCGACCTGGCCACGCCACCATACTTTTCTGAAACTGCTTCAAAGAATGAAGACTGTCCCCACAAACCAACACTGGGTCCTTTTAACATGCTTTGTCCTCACTCACATGCTTTCTAG

Protein sequence

MRKFNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVTLEQLQVILFPCSLRDAAKGIKSSISKNLVSFRVPHLPLLTVASSYEMLSLFWQNLPNMITKPVSGAKLNYCNEGIKMVSFRLPYYLEIQGPGFGIRIRPLTIPAFPCDLATPPYFSETASKNEDCPHKPTLGPFNMLCPHSHAF
Homology
[Close]
BLAST of Lag0039556 vs. NCBI nr
Match: XP_038890753.1 (uncharacterized protein LOC120080236 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 3.7e-15
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = 0 

Query: 4   FNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVTL 63
           F+PGI+   LD  RFE+K VM QML    QF G   EDPH+H+K F++ CN  +IPR+T 
Sbjct: 20  FSPGIIYPTLDGTRFEMKSVMLQMLQIAGQFRGAQGEDPHAHMKRFLETCNSFVIPRITP 79

Query: 64  EQLQVILFPCSLRDAAKGIKSSI 87
           E +++ LFP SLRD AK + SS+
Sbjct: 80  EAIRLSLFPYSLRDNAKKLVSSL 102

[Close]
BLAST of Lag0039556 vs. NCBI nr
Match: XP_038880527.1 (uncharacterized protein LOC120072192 [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-13
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 0 

Query: 4   FNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVTL 63
           F+PGI+    D  RFE+K VM QML    QF G   EDPH+H+K F++ CN  +IPR+T 
Sbjct: 20  FSPGIIYPMPDGTRFEMKSVMLQMLQTARQFGGSHGEDPHAHMKRFLETCNFFVIPRITP 79

Query: 64  EQLQVILFPCSLRDAAKGIKSSI 87
           E++++ LFP SLRD AK   SS+
Sbjct: 80  EKIRLSLFPNSLRDDAKQWVSSL 102

[Close]
BLAST of Lag0039556 vs. NCBI nr
Match: XP_038889254.1 (uncharacterized protein LOC120079150 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 7.6e-13
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 0 

Query: 4  FNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVTL 63
          F+PGI+    +  RFE+K VM QML   +QF G   EDPH+H+K F++ CN  +IP +T 
Sbjct: 8  FSPGIIYPMPNGTRFEMKSVMLQMLQTADQFGGARGEDPHAHMKCFLETCNSFLIPGITP 67

Query: 64 EQLQVILFPCSLRDAAKGIKSSI 87
          E +++ LFP SLRD AK   SS+
Sbjct: 68 EAIRLSLFPYSLRDDAKKWASSL 90

[Close]
BLAST of Lag0039556 vs. NCBI nr
Match: XP_030483210.1 (uncharacterized protein LOC115699807 [Cannabis sativa])

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-12
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 0 

Query: 3   KFNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVT 62
           + NPGIVR ++   +FELKPVMFQML    QF G   EDPH HL+ F+++ +   +P VT
Sbjct: 19  ELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGIPTEDPHLHLRLFMEVSDSFKLPGVT 78

Query: 63  LEQLQVILFPCSLRDAAKGIKSSI 87
            + L++ LFP SLRD A+   +S+
Sbjct: 79  EDALRLKLFPYSLRDQARAWLNSL 102

[Close]
BLAST of Lag0039556 vs. NCBI nr
Match: ERM93404.1 (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-12
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 0 

Query: 3   KFNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVT 62
           + NPGIVR ++   +FELKPVMFQML    QF G   EDPH HL+SF+++ +   I  V+
Sbjct: 33  ELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTEDPHLHLRSFLEVSDSFKIQGVS 92

Query: 63  LEQLQVILFPCSLRDAAKGIKSSISKNLVS 93
            E L++ LFP SLRD A+   +++  + V+
Sbjct: 93  EEVLRLKLFPFSLRDRARSWLNTLPPDSVT 122

[Close]
BLAST of Lag0039556 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 0 

Query: 3   KFNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVT 62
           + NPGIVR ++   +FELKPVMFQML    QF G   EDPH HL+SF+++ +   I  V+
Sbjct: 33  ELNPGIVRPEIQAPQFELKPVMFQMLQTVGQFSGMPTEDPHLHLRSFLEVSDSFKIQGVS 92

Query: 63  LEQLQVILFPCSLRDAAKGIKSSISKNLVS 93
            E L++ LFP SLRD A+   +++  + V+
Sbjct: 93  EEVLRLKLFPFSLRDRARSWLNTLPPDSVT 122

[Close]
BLAST of Lag0039556 vs. ExPASy TrEMBL
Match: A0A392NID4 (Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0020009 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0 

Query: 5   NPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVTLE 64
           N GIV+ ++   +FE KP+MFQML    QF   + EDPH HLK F+ + +   IP +T++
Sbjct: 85  NTGIVKPEITAAQFEFKPMMFQMLQTVGQFSRAATEDPHLHLKQFLKVASNFKIPGITID 144

Query: 65  QLQVILFPCSLRDAAKGIKSSISKNLVS 93
             ++ LFP SLRD  K   +S+  N ++
Sbjct: 145 AFRLRLFPYSLRDRPKSWLNSLEPNAIA 172

[Close]
BLAST of Lag0039556 vs. ExPASy TrEMBL
Match: W9RHB3 (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN=L484_000983 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 0 

Query: 5    NPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVTLE 64
            NP IVR  ++   FELKPVMFQML    QF G + +DPH HL+ F+++ +   +P V  E
Sbjct: 1418 NPVIVRPNIEAPHFELKPVMFQMLQIVGQFSGMATDDPHQHLRLFMEVSDIFKLPGVPSE 1477

Query: 65   QLQVILFPCSLRDAAKGIKSSI 87
             L++ LFP SLRD A+   +S+
Sbjct: 1478 TLRLTLFPFSLRDRARAWFNSL 1499

[Close]
BLAST of Lag0039556 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 3   KFNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPRVT 62
           + N GIVR ++    FELKPVMFQML    QF G   EDPH H++SF+++ +   +  V+
Sbjct: 35  ELNSGIVRPEIQAPHFELKPVMFQMLQTVGQFGGSPTEDPHLHIRSFLEVSDSFKLQGVS 94

Query: 63  LEQLQVILFPCSLRDAAKGIKSSISKNLVS 93
            E L++ LFP SLRD A+   +++  + V+
Sbjct: 95  EEALRLKLFPFSLRDRARAWLNTLPPDSVT 124

[Close]
BLAST of Lag0039556 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 0 

Query: 1   MRKFNPGIVRTKLDTERFELKPVMFQMLTATEQFVGCSLEDPHSHLKSFIDICNKLIIPR 60
           + + NP I+R ++    FELKPVMFQML    QF G   EDPH HLKSF+ + +     R
Sbjct: 60  VEELNPCIIRPEMQATTFELKPVMFQMLQTIGQFHGLPSEDPHLHLKSFLGVSDSFRFQR 119

Query: 61  VTLEQLQVILFPCSLRDAAK 81
           V  + +++ LFP SLRD AK
Sbjct: 120 VDKDVIRLSLFPYSLRDGAK 139

The following BLAST results are available for this feature:
BLAST of Lag0039556 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038890753.13.7e-1551.81uncharacterized protein LOC120080236 [Benincasa hispida][more]
XP_038880527.11.2e-1350.60uncharacterized protein LOC120072192 [Benincasa hispida][more]
XP_038889254.17.6e-1348.19uncharacterized protein LOC120079150 [Benincasa hispida][more]
XP_030483210.11.7e-1247.62uncharacterized protein LOC115699807 [Cannabis sativa][more]
ERM93404.12.9e-1245.56hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
BLAST of Lag0039556 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0039556 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
U5CUI21.4e-1245.56Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A392NID42.7e-1140.91Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium medium OX=97028... [more]
W9RHB32.7e-1146.34Putative disease resistance RPP13-like protein 1 OS=Morus notabilis OX=981085 GN... [more]
U5CUK74.5e-1142.22Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640... [more]
A0A6J1EEI24.5e-1147.50uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... [more]
BLAST of Lag0039556 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039556.1Lag0039556.1mRNA