Lag0039549 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039549
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chr2: 46040049 .. 46040387 (+)
RNA-Seq Expression	Lag0039549
Synteny	Lag0039549

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAAAAAGGTCAAGTTCTTTATTTGGGAGCTTAGTCACTCTTGTATCAACACCGCCGACGTCATTCAAAGAAAGCATCCTTGGCATTCCTATCTCCTTCTTGCTGCTGGTTATGTTACAAGGCCAAGAAATCAGATTCATCTTTTCAGCCAATGCTCCTATGCAGCCGCCTTATGGGACCTTCTCCAACAAGCTTTGGTTGGACCTTTGCTAGACCAGGTGACATCCTTTCCCTTATTAACTTCTCCATCGTCAGGCATCCTTTTAAAAAGAGAAGAAATTCTTATGGCTCAACTTCATCTATGCGTTTTTTTGGAATATTTGGCTGGAGCGTAA

mRNA sequence

ATGCCGAAAAAGGTCAAGTTCTTTATTTGGGAGCTTAGTCACTCTTGTATCAACACCGCCGACGTCATTCAAAGAAAGCATCCTTGGCATTCCTATCTCCTTCTTGCTGCTGGTTATGTTACAAGGCCAAGAAATCAGATTCATCTTTTCAGCCAATGCTCCTATGCAGCCGCCTTATGGGACCTTCTCCAACAAGCTTTGGTTGGACCTTTGCTAGACCAGGTGACATCCTTTCCCTTATTAACTTCTCCATCGTCAGGCATCCTTTTAAAAAGAGAAGAAATTCTTATGGCTCAACTTCATCTATGCGTTTTTTTGGAATATTTGGCTGGAGCGTAA

Coding sequence (CDS)

ATGCCGAAAAAGGTCAAGTTCTTTATTTGGGAGCTTAGTCACTCTTGTATCAACACCGCCGACGTCATTCAAAGAAAGCATCCTTGGCATTCCTATCTCCTTCTTGCTGCTGGTTATGTTACAAGGCCAAGAAATCAGATTCATCTTTTCAGCCAATGCTCCTATGCAGCCGCCTTATGGGACCTTCTCCAACAAGCTTTGGTTGGACCTTTGCTAGACCAGGTGACATCCTTTCCCTTATTAACTTCTCCATCGTCAGGCATCCTTTTAAAAAGAGAAGAAATTCTTATGGCTCAACTTCATCTATGCGTTTTTTTGGAATATTTGGCTGGAGCGTAA

Protein sequence

MPKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQIHLFSQCSYAAALWDLLQQALVGPLLDQVTSFPLLTSPSSGILLKREEILMAQLHLCVFLEYLAGA

Homology

[Close]

BLAST of Lag0039549 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.9e-04
Identity = 28/67 (41.79%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 2   PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALW 61
           PKK KFFIW L H CINTAD +Q++ P  +          + +  I HLF  C Y+  LW
Sbjct: 783 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 842

Query: 62  DLLQQAL 68
              Q  L
Sbjct: 843 SKAQALL 849

[Close]

BLAST of Lag0039549 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.9e-04
Identity = 28/67 (41.79%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 2   PKKVKFFIWELSHSCINTADVIQRKHPWHSYLLLAAGYVTRPRNQI-HLFSQCSYAAALW 61
           PKK KFFIW L H CINTAD +Q++ P  +          + +  I HLF  C Y+  LW
Sbjct: 877 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 936

Query: 62  DLLQQAL 68
              Q  L
Sbjct: 937 SKAQALL 943

The following BLAST results are available for this feature:

BLAST of Lag0039549 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	7.9e-04	41.79	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	7.9e-04	41.79	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0039549 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039549.1	Lag0039549.1	mRNA