Lag0039544 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0039544
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionNAD(P)-linked oxidoreductase superfamily protein
Locationchr2: 46024672 .. 46025133 (-)
RNA-Seq ExpressionLag0039544
SyntenyLag0039544
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTTCCACGGCGTCTCAGTTGCGATTAGGTGTCGTGCCTTCTCTTTCACTCTAACAAGATCAGCCAAGCAATGGTTTCAAAGGTTGAAAAGGAAATCCATCAGCTCTTTCAAGGAATTAGCCCGAGCATTCCTCTCGCAATTCATGGGAGTTAGAGAACAGTGCAAGCCTCACATCAACCTCTTAACTATCAAACAACAGTCAGGTGAGAGCTTGCGTGATTATATAACACGTTTGAACAAGGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGTCCTAATAGCCATCATAGCCGGACTAGAAGACGAGAGATTGCTTAATTCGATAGGTAAGAGGCAACCTCGAACCTATGCTGAATTTGTCTCCAAGGCCCAGAAGTACATGAGTGCAGAGGAATTGCTTAGATCGAAGAGGTCAGAGCACAAGAGGTATTCTTCAATCGACCGAGACTAG

mRNA sequence

ATGGACTTCCACGGCGTCTCAGTTGCGATTAGGTGTCGTGCCTTCTCTTTCACTCTAACAAGATCAGCCAAGCAATGGTTTCAAAGGTTGAAAAGGAAATCCATCAGCTCTTTCAAGGAATTAGCCCGAGCATTCCTCTCGCAATTCATGGGAGTTAGAGAACAGTGCAAGCCTCACATCAACCTCTTAACTATCAAACAACAGTCAGGTGAGAGCTTGCGTGATTATATAACACGTTTGAACAAGGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGTCCTAATAGCCATCATAGCCGGACTAGAAGACGAGAGATTGCTTAATTCGATAGGTAAGAGGCAACCTCGAACCTATGCTGAATTTGTCTCCAAGGCCCAGAAGTACATGAGTGCAGAGGAATTGCTTAGATCGAAGAGGTCAGAGCACAAGAGGTATTCTTCAATCGACCGAGACTAG

Coding sequence (CDS)

ATGGACTTCCACGGCGTCTCAGTTGCGATTAGGTGTCGTGCCTTCTCTTTCACTCTAACAAGATCAGCCAAGCAATGGTTTCAAAGGTTGAAAAGGAAATCCATCAGCTCTTTCAAGGAATTAGCCCGAGCATTCCTCTCGCAATTCATGGGAGTTAGAGAACAGTGCAAGCCTCACATCAACCTCTTAACTATCAAACAACAGTCAGGTGAGAGCTTGCGTGATTATATAACACGTTTGAACAAGGAAGCACTGCAGGTTGAGGGATACAGTGAGGGAGCAGTCCTAATAGCCATCATAGCCGGACTAGAAGACGAGAGATTGCTTAATTCGATAGGTAAGAGGCAACCTCGAACCTATGCTGAATTTGTCTCCAAGGCCCAGAAGTACATGAGTGCAGAGGAATTGCTTAGATCGAAGAGGTCAGAGCACAAGAGGTATTCTTCAATCGACCGAGACTAG

Protein sequence

MDFHGVSVAIRCRAFSFTLTRSAKQWFQRLKRKSISSFKELARAFLSQFMGVREQCKPHINLLTIKQQSGESLRDYITRLNKEALQVEGYSEGAVLIAIIAGLEDERLLNSIGKRQPRTYAEFVSKAQKYMSAEELLRSKRSEHKRYSSIDRD
Homology
BLAST of Lag0039544 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-35
Identity = 82/147 (55.78%), Postives = 109/147 (74.15%), Query Frame = 0

Query: 2   DFHGVSVAIRCRAFSFTLTRSAKQWFQRLKRKSISSFKELARAFLSQFMGVREQCKPHIN 61
           D +G++ AIRCR FSFTLT S + WFQ+LKRKSISSFKELARAF++QF G   + +P   
Sbjct: 35  DIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPVAY 94

Query: 62  LLTIKQQSGESLRDYITRLNKEALQVEGYSEGAVLIAIIAGLEDERLLNSIGKRQPRTYA 121
           LLTIKQ++ ESL+DY+ R NKE LQVEG ++  VL+  I+G++DE+L+ S GKR   T++
Sbjct: 95  LLTIKQKATESLKDYVARFNKEKLQVEGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFS 154

Query: 122 EFVSKAQKYMSAEELLRSKRSEHKRYS 149
           E  S+AQ YMS  EL+ SKR    +Y+
Sbjct: 155 EARSRAQTYMSVGELIHSKRDPKGKYA 181

BLAST of Lag0039544 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-35
Identity = 83/151 (54.97%), Postives = 110/151 (72.85%), Query Frame = 0

Query: 2   DFHGVSVAIRCRAFSFTLTRSAKQWFQRLKRKSISSFKELARAFLSQFMGVREQCKPHIN 61
           D + +  AIRCR FSFTLT SA+ WF++LKR SISSFKELA AF++QF+G R + KP   
Sbjct: 35  DIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTY 94

Query: 62  LLTIKQQSGESLRDYITRLNKEALQVEGYSEGAVLIAIIAGLEDERLLNSIGKRQPRTYA 121
           LLTIKQ++ ESL++Y+ R N+E LQVEG ++   LIA ++G++DERL+ S GKR P T+ 
Sbjct: 95  LLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFM 154

Query: 122 EFVSKAQKYMSAEELLRSKRS---EHKRYSS 150
           E +S+AQKYMSA EL+   R    E   YS+
Sbjct: 155 EALSRAQKYMSAGELIHLSRDLERERANYST 185

BLAST of Lag0039544 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 154.8 bits (390), Expect = 5.8e-34
Identity = 80/141 (56.74%), Postives = 105/141 (74.47%), Query Frame = 0

Query: 1   MDFHGVSVAIRCRAFSFTLTRSAKQWFQRLKRKSISSFKELARAFLSQFMGVREQCKPHI 60
           MD +GVS A+RCR FS TL  SA+ WF++LKR SISSFK LARAF++QF+G R + +P  
Sbjct: 218 MDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVA 277

Query: 61  NLLTIKQQSGESLRDYITRLNKEALQVEGYSEGAVLIAIIAGLEDERLLNSIGKRQPRTY 120
            LLTIKQ++ ESLRDY+ R N+E LQVEG ++   L+A ++G+ DE L  S GKR P T+
Sbjct: 278 YLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTF 337

Query: 121 AEFVSKAQKYMSAEELLRSKR 142
           +E +S+AQ+YMSA E   SKR
Sbjct: 338 SEALSRAQRYMSAGEFFYSKR 358

BLAST of Lag0039544 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 149.4 bits (376), Expect = 2.5e-32
Identity = 78/153 (50.98%), Postives = 108/153 (70.59%), Query Frame = 0

Query: 1   MDFHGVSVAIRCRAFSFTLTRSAKQWFQRLKRKSISSFKELARAFLSQFMGVREQCKPHI 60
           MD +GVS A++CR FS TL+ SA+ WF++LKR SISSFK LA+AF++QF+G R + +P  
Sbjct: 38  MDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVA 97

Query: 61  NLLTIKQQSGESLRDYITRLNKEALQVEGYSEGAVLIAIIAGLEDERLLNSIGKRQPRTY 120
            LLTIKQ++ ESL DY+ R N+E LQVEG +    L+A ++ + DE L  S GK+ P T+
Sbjct: 98  YLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTF 157

Query: 121 AEFVSKAQKYMSAEELLRSKRSEHKRYSSIDRD 154
           +E +S+AQKYMSA E   SKR    + S  +R+
Sbjct: 158 SEALSRAQKYMSAGEFFFSKREPEGKQSDQNRE 190

BLAST of Lag0039544 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 148.7 bits (374), Expect = 4.2e-32
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 0

Query: 1   MDFHGVSVAIRCRAFSFTLTRSAKQWFQRLKRKSISSFKELARAFLSQFMGVREQCKPHI 60
           MD +GVS AIRCR FS TL  SA+ WF++LKR SISSFK LARAF++QF+G R + +P  
Sbjct: 123 MDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVA 182

Query: 61  NLLTIKQQSGESLRDYITRLNKEALQVEGYSEGAVLIAIIAGLEDERLLNSIGKRQPRTY 120
            LLTIKQ++ ESL DY+ R N+E LQ+EG ++   L+A ++G+ DE L  S  KR P T+
Sbjct: 183 YLLTIKQRTAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPSTF 242

Query: 121 AEFVSKAQKYMSAEELLRS------KRSEHKRYSSIDR 153
           +E +S+AQ+YMSA E   S      KR++ KR  S D+
Sbjct: 243 SEALSRAQRYMSASEFCYSKREPDGKRTDQKRERSGDK 280

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147761.12.4e-3555.78uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_022158344.16.9e-3554.97uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_022158830.15.8e-3456.74uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022150035.12.5e-3250.98uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022159109.14.2e-3251.90uncharacterized protein LOC111025548 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 14..104
e-value: 4.1E-13
score: 49.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0039544.1Lag0039544.1mRNA