Lag0039526 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0039526
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr2: 45743882 .. 45744782 (+)
RNA-Seq Expression	Lag0039526
Synteny	Lag0039526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGCGGAGGAGTTAGATAAATTGTTTCCCAATCTAGAGTCTGAGAACGACGATGATGCAGTTAAGATTAACAGTTTTTTATTTCTTTGAACTGGCGATGATGGGGAGGGAACGAAAACAACAAATATATGCTGCAACGTTGGACTTAATCGATGATTGAGCTGCCTTCTGCAACGAGGATTAGAGAACCCTCATTTTTGACAAGACGATAAAAAGTCTTAAAAAGGTACTGAAGGGGAAGCCTAGTTGTACAAGCGAAAGGGAGGTGGTCTAAGAAGCAAGAGACATATAGTTTGTACGATTTTCTACATGCCTTTCAGGTTAGTATGATTAGACTATTAAATGTTAATATTAATGCATTGCTAGCATTTCTTACATTTTTATGGTTTCTTTATGCAGGTATTTCATCTCTAACTAGGTGTGTTGCCAATCGGCTAAGTGAGACGATCATCCCACGCATCCTTCGATGGTCTTGCTCCCACTCTCCATCTTATACGACTCTTACTGATGATGTTTTTGTATACGAGCGGTAAGTTATTTTGATTTTTAAATGTTTTGCCTTCATTATTATTTGGGAACTTTTGATTGTAACTAAGTATTGTTTCAGGTTAGAGTGAGGTTGAGTTTTGATGCCTCCGAGGAGGAGAGTCGATTCATGAATCGAGTAATGGAGTTTCCATGTGCACCAAGGCCAAAACCTGTACCTCCTGTAGTTGAGGCTCCACTCCTTATTATAGAGGAGGTTCCACTCCTTATTGTAGAGGAGGCTACAAGCGGTGAGGTCGATACTGAAATGGTTGATGCTACTGAAGCTTTGCCGGAAGTTTCAAACAAGGAGAAAGATGATCCCAACAAGAGGGAAAGGGAGAAAGAGGGAAAGGGAGAAAGAGAAAAATAG

mRNA sequence

ATGAAGGCGGAGGAGTTAGATAAATTGTTTCCCAATCTAGAGTCTGAGAACGACGATGATGCAGTTAAGATTAACAGTATTTCATCTCTAACTAGGTGTGTTGCCAATCGGCTAAGTGAGACGATCATCCCACGCATCCTTCGATGGTCTTGCTCCCACTCTCCATCTTATACGACTCTTACTGATGATGTTTTTGTATACGAGCGAGTGAGGTTGAGTTTTGATGCCTCCGAGGAGGAGAGTCGATTCATGAATCGAGTAATGGAGTTTCCATGTGCACCAAGGCCAAAACCTGTACCTCCTGTAGTTGAGGCTCCACTCCTTATTATAGAGGAGGTTCCACTCCTTATTGTAGAGGAGGCTACAAGCGGTGAGGTCGATACTGAAATGGTTGATGCTACTGAAGCTTTGCCGGAAGTTTCAAACAAGGAGAAAGATGATCCCAACAAGAGGGAAAGGGAGAAAGAGGGAAAGGGAGAAAGAGAAAAATAG

Coding sequence (CDS)

ATGAAGGCGGAGGAGTTAGATAAATTGTTTCCCAATCTAGAGTCTGAGAACGACGATGATGCAGTTAAGATTAACAGTATTTCATCTCTAACTAGGTGTGTTGCCAATCGGCTAAGTGAGACGATCATCCCACGCATCCTTCGATGGTCTTGCTCCCACTCTCCATCTTATACGACTCTTACTGATGATGTTTTTGTATACGAGCGAGTGAGGTTGAGTTTTGATGCCTCCGAGGAGGAGAGTCGATTCATGAATCGAGTAATGGAGTTTCCATGTGCACCAAGGCCAAAACCTGTACCTCCTGTAGTTGAGGCTCCACTCCTTATTATAGAGGAGGTTCCACTCCTTATTGTAGAGGAGGCTACAAGCGGTGAGGTCGATACTGAAATGGTTGATGCTACTGAAGCTTTGCCGGAAGTTTCAAACAAGGAGAAAGATGATCCCAACAAGAGGGAAAGGGAGAAAGAGGGAAAGGGAGAAAGAGAAAAATAG

Protein sequence

MKAEELDKLFPNLESENDDDAVKINSISSLTRCVANRLSETIIPRILRWSCSHSPSYTTLTDDVFVYERVRLSFDASEEESRFMNRVMEFPCAPRPKPVPPVVEAPLLIIEEVPLLIVEEATSGEVDTEMVDATEALPEVSNKEKDDPNKREREKEGKGEREK

Homology

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BLAST of Lag0039526 vs. NCBI nr
Match: XP_022154965.1 (uncharacterized protein LOC111022110 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 5.1e-04
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 0


Query: 26  SISSLTRCVANRLSETIIPRILRWSCSHSPSYTTLTDDVF--VYERVRLSFDASEEESRF 85
           +IS+L+  VA RL++  IPR+LRWSC++S ++  L  +VF  V  +V +  +A++ E + 
Sbjct: 82  TISTLSTRVALRLNDDAIPRLLRWSCTYSRAFNVLEREVFENVKSKVVVRLEATDVERQH 141

Query: 86  MNRVMEFPCAPRPKPVPPVVEAPLLIIEEVPLLIVEEATSGEVDTEMVDATE 136
           M RVM  P AP   P P  +          PL     A    V +E+ D  E
Sbjct: 142 MARVMHPPVAPVGPPAPTELATE-------PLATTSTAQKSPVTSEVGDLVE 186

The following BLAST results are available for this feature:

BLAST of Lag0039526 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154965.1	5.1e-04	34.82	uncharacterized protein LOC111022110 [Momordica charantia]	[more]

BLAST of Lag0039526 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0039526.1	Lag0039526.1	mRNA